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Task #6692 (closed)

Opened 8 years ago

Closed 8 years ago

Bug: failed jpg import via Insight

Reported by: cblackburn Owned by:
Priority: major Milestone: OMERO-Beta4.3.2
Component: Services Version: n.a.
Keywords: n.a. Cc: cxallan, jburel
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: 2011-09-15 (5)

Description

The import of 8kx8k.jpg in Importer works but the error in #6605 still stands, black thumbnail and invalid image.

However, in Insight the import failed due to a Thumbnail error. See stacktrace in comment.

Change History (3)

comment:1 Changed 8 years ago by cblackburn

org.openmicroscopy.shoola.env.rnd.RenderingServiceException: Cannot get thumbnail
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getThumbnailByLongestSide(OMEROGateway.java:3186)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.createImportedImage(OmeroImageServiceImpl.java:254)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:181)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1326)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot set RE defaults.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:911)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.needDefault(OMEROGateway.java:1842)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getThumbnailByLongestSide(OMEROGateway.java:3170)
	... 13 more
Caused by: omero.ResourceError
    serverStackTrace = "ome.conditions.ResourceError: Error instantiating pixel buffer: C:\OMERO\Pixels\Dir-003\3030_pyramid
                        	at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:644)
                        	at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:410)
                        	at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:484)
                        	at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:1307)
                        	at ome.services.ThumbnailBean._resetDefaults(ThumbnailBean.java:1270)
                        	at ome.services.ThumbnailBean.resetDefaults(ThumbnailBean.java:1240)
                        	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                        	at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
                        	at java.lang.reflect.Method.invoke(Unknown Source)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at ome.security.basic.EventHandler.invoke(EventHandler.java:150)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182)
                        	at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy80.resetDefaults(Unknown Source)
                        	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                        	at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
                        	at java.lang.reflect.Method.invoke(Unknown Source)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy80.resetDefaults(Unknown Source)
                        	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                        	at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
                        	at java.lang.reflect.Method.invoke(Unknown Source)
                        	at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)
                        	at ome.services.throttling.Callback.run(Callback.java:56)
                        	at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
                        	at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:136)
                        	at ome.services.blitz.impl.ThumbnailStoreI.resetDefaults_async(ThumbnailStoreI.java:135)
                        	at omero.api._ThumbnailStoreTie.resetDefaults_async(_ThumbnailStoreTie.java:176)
                        	at omero.api._ThumbnailStoreDisp.___resetDefaults(_ThumbnailStoreDisp.java:565)
                        	at omero.api._ThumbnailStoreDisp.__dispatch(_ThumbnailStoreDisp.java:695)
                        	at IceInternal.Incoming.invoke(Incoming.java:159)
                        	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
                        	at Ice.ConnectionI.message(ConnectionI.java:972)
                        	at IceInternal.ThreadPool.run(ThreadPool.java:577)
                        	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
                        	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
                        "
    serverExceptionClass = "ome.conditions.ResourceError"
    message = "Error instantiating pixel buffer: C:\OMERO\Pixels\Dir-003\3030_pyramid"
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
	at java.lang.Class.newInstance0(Class.java:355)
	at java.lang.Class.newInstance(Class.java:308)
	at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
	at IceInternal.BasicStream.throwException(BasicStream.java:1632)
	at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
	at omero.api._ThumbnailStoreDelM.resetDefaults(_ThumbnailStoreDelM.java:818)
	at omero.api.ThumbnailStorePrxHelper.resetDefaults(ThumbnailStorePrxHelper.java:1142)
	at omero.api.ThumbnailStorePrxHelper.resetDefaults(ThumbnailStorePrxHelper.java:1114)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.needDefault(OMEROGateway.java:1832)
	... 14 more

comment:2 Changed 8 years ago by jburel

  • Cc cxallan jburel added
  • Component changed from Insight to Services
  • Owner jburel deleted

The fact that the import fails is b/c a thumbnail cannot be created.
The problem is actually in the pyramid generation cf. stacktrace.

comment:3 Changed 8 years ago by cblackburn

  • Resolution set to invalid
  • Status changed from new to closed

Phase III testing was initially carried out with the wrong clients. This error is not evident when using the correct clients.

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