Task #6704 (closed)
Opened 13 years ago
Closed 13 years ago
BUG: Import CellWorx failure
| Reported by: | ajpatterson | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-Beta4.3.2 |
| Component: | Bio-Formats | Version: | n.a. |
| Keywords: | n.a. | Cc: | mlinkert, saloynton |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
The data is:
test images good / cellworx / hms / plate1 / plate1.HTD
I imported it to ajpatterson on 10.2.1.191, into group ajp-test-collab, screen TestPhase3Mk2S / plate1 / Run 457
The red channels is garbled and only covers half the frame.
The plate looks like:
attachment1
And an individual image looks like:
attachment2
Chris got me to rename one of the pnl files to a dv and try importing it. It imported and looked correct.
Attachments (2)
Change History (10)
Changed 13 years ago by ajpatterson
Changed 13 years ago by ajpatterson
comment:1 Changed 13 years ago by Melissa Linkert <melissa@…>
comment:2 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [0fa9512ce19b5837aae7d33dddbbc4a95c4f2c3a/bioformats.git]) Fix indexing problem which prevented certain datasets from opening.
If multiple fields and multiple planes were present, then only the first
plane in each field was read correctly.
While we are at it, this also fixes a bug which caused the above to look
much worse in OMERO. Pixel buffers are now explicitly cleared before we
attempt to return a blank plane.
See #6704.
comment:3 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [ed6cb1799cb7185f8f5d8bb130bc9959044ffec4/bioformats.git]) Fix indexing problem which prevented certain datasets from opening.
If multiple fields and multiple planes were present, then only the first
plane in each field was read correctly.
While we are at it, this also fixes a bug which caused the above to look
much worse in OMERO. Pixel buffers are now explicitly cleared before we
attempt to return a blank plane.
See #6704.
(cherry picked from commit 0fa9512ce19b5837aae7d33dddbbc4a95c4f2c3a)
comment:4 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [ed6cb1799cb7185f8f5d8bb130bc9959044ffec4/bioformats.git]) Fix indexing problem which prevented certain datasets from opening.
If multiple fields and multiple planes were present, then only the first
plane in each field was read correctly.
While we are at it, this also fixes a bug which caused the above to look
much worse in OMERO. Pixel buffers are now explicitly cleared before we
attempt to return a blank plane.
See #6704.
(cherry picked from commit 0fa9512ce19b5837aae7d33dddbbc4a95c4f2c3a)
comment:5 Changed 13 years ago by mlinkert
comment:6 Changed 13 years ago by saloynton
testing on the new build #2843
comment:7 Changed 13 years ago by saloynton
works as expected closing bug
comment:8 Changed 13 years ago by saloynton
- Resolution set to fixed
- Status changed from new to closed
(In [0fa9512ce19b5837aae7d33dddbbc4a95c4f2c3a/bioformats.git]) Fix indexing problem which prevented certain datasets from opening.
If multiple fields and multiple planes were present, then only the first
plane in each field was read correctly.
While we are at it, this also fixes a bug which caused the above to look
much worse in OMERO. Pixel buffers are now explicitly cleared before we
attempt to return a blank plane.
See #6704.