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Task #6726 (closed)

Opened 13 years ago

Closed 13 years ago

Last modified 13 years ago

Bug: Deltavision files without extension

Reported by:	cxallan	Owned by:	cxallan
Priority:	blocker	Milestone:	OMERO-Beta4.3.2
Component:	Bio-Formats	Version:	n.a.
Keywords:	n.a.	Cc:	mlinkert, saloynton
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	0.0d
Sprint:	2011-09-15 (5)

Description

If a Deltavision file is initialized without an extension setId() throws the following exception:

Caused by: java.lang.StringIndexOutOfBoundsException: String index out of range: -1
        at java.lang.String.substring(String.java:1937)
        at loci.formats.in.DeltavisionReader.findLogFiles(DeltavisionReader.java:805)
        at loci.formats.in.DeltavisionReader.initFile(DeltavisionReader.java:239)
        at loci.formats.FormatReader.setId(FormatReader.java:1072)
        at loci.formats.ImageReader.setId(ImageReader.java:672)
        at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488)
        at loci.formats.ChannelFiller.setId(ChannelFiller.java:249)
        at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488)
        at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:257)
        at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488)
        at ome.io.bioformats.BfPixelsWrapper.<init>(BfPixelsWrapper.java:59)
        at ome.io.bioformats.BfPixelBuffer.reader(BfPixelBuffer.java:67)
        ... 39 more

References

Change History (10)

comment:1 Changed 13 years ago by Chris Allan <callan@…>

Remaining Time changed from 0.1 to 0
Resolution set to fixed
Status changed from new to closed

(In [8dc31c5e15a05f99a2348c49a76f2e47147eaef4/bioformats.git]) Do not try to find log files when there is no extension. (Fixes #6726)

comment:7 Changed 13 years ago by Chris Allan <callan@…>

(In [8dc31c5e15a05f99a2348c49a76f2e47147eaef4/bioformats.git]) Do not try to find log files when there is no extension. (Fixes #6726)

comment:8 Changed 13 years ago by Chris Allan <callan@…>

(In [bd51f330719acf81741035de6d90a8001fbe3db7/bioformats.git]) Make sure to return. (See #6726)

comment:9 Changed 13 years ago by Chris Allan <callan@…>

comment:10 Changed 13 years ago by Chris Allan <callan@…>

(In [9aceede8ee80ab5cd933668689378d26510e651b/bioformats.git]) Make sure to return. (See #6726)
(cherry picked from commit bd51f330719acf81741035de6d90a8001fbe3db7)

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