Task #6886 (closed)
Bug: Import from insight
| Reported by: | jburel | Owned by: | jburel |
|---|---|---|---|
| Priority: | minor | Milestone: | OMERO-Beta4.3.3 |
| Component: | Insight | Version: | n.a. |
| Keywords: | n.a. | Cc: | mlinkert, stefan.duerrenberger@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | 2011-10-13 (1) |
Description
Melissa:
I was able to reproduce the problem using a dataset that Stefan has
already sent (Jean-Marie: see /ome/data_repo/4.3.2-new-formats/hitachi/).
The dataset contains two files; 001_q01.bmp and 001_q01.txt. The .txt
file must be selected in order for the dataset to be detected as being
in the Hitachi format. If I pick just the .txt file to be imported via
Insight, then the resulting image does not appear in the chosen
Project/Dataset?. If I pick the same file and Project/Dataset? in the importer,
then the image does appear in the Project/Dataset?.
The same problem also occurs with one of our MicroManager? datasets
(test_images_good/micromanager/metadata.txt), so this is not isolated to
the Hitachi format.
I couldn't find anything obvious in Bio-Formats that would be causing
this problem, but I can keep looking if needed.
Change History (4)
comment:1 Changed 13 years ago by jburel
- Remaining Time set to 0.1
- Status changed from new to accepted
comment:2 Changed 13 years ago by jburel
- Remaining Time changed from 0.1 to 0
- Resolution set to fixed
- Status changed from accepted to closed
comment:3 Changed 13 years ago by jburel
To test:
- Use the file indicated in the description
- Open insight
- Select a dataset, select the Import item from right click menu
- Click import.
- Check that the image is imported and linked to the selected dataset
comment:4 Changed 13 years ago by Jean-marie Burel <j.burel@…>
(In [94ec770820c320a37e943b2443106e6e7dfa28fc/ome.git]) Fix import issue for file .txt (close #6886)
see github feature/bugsinsight4.3.2 94ec770