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Task #6899 (closed)

Opened 8 years ago

Closed 8 years ago

Last modified 8 years ago

BUG:LEICA SP5

Reported by:	omero-qa	Owned by:	mlinkert
Priority:	minor	Milestone:	Unscheduled
Component:	Bio-Formats	Version:	n.a.
Keywords:	n.a.	Cc:	m.spitaler@…
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	0.0d
Sprint:	n.a.

Description

http://qa.openmicroscopy.org.uk/qa/feedback/3995/

Comment: failed import of Leica SP5 *.lif file; the file contains a FRAP experiments, with image sets for pre-bleach, bleach and post-bleach; I suspect that might have confused the importer

java.lang.NumberFormatException: For input string: "-1.#INF"
	at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source)
	at java.lang.Double.parseDouble(Unknown Source)
	at loci.formats.in.LIFReader.parseDouble(LIFReader.java:1784)
	at loci.formats.in.LIFReader.translateSingleROIs(LIFReader.java:1109)
	at loci.formats.in.LIFReader.translateMetadata(LIFReader.java:824)
	at loci.formats.in.LIFReader.initMetadata(LIFReader.java:472)
	at loci.formats.in.LIFReader.initFile(LIFReader.java:418)
	at loci.formats.FormatReader.setId(FormatReader.java:1072)
	at loci.formats.ImageReader.setId(ImageReader.java:672)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:249)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:257)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488)

References

Change History (6)

comment:1 Changed 8 years ago by jburel

Component changed from from QA to Bio-Formats

comment:2 Changed 8 years ago by jburel

File submitted see QA entry

comment:3 Changed 8 years ago by Melissa Linkert <melissa@…>

Remaining Time set to 0
Resolution set to fixed
Status changed from new to closed

(In [de2c6ab6ffc7547d3a9e01d600635e261053150d/bioformats.git]) Catch NumberFormatException? when parsing Double values.

Closes #6899.

comment:4 Changed 8 years ago by Melissa Linkert <melissa@…>

(In [de2c6ab6ffc7547d3a9e01d600635e261053150d/bioformats.git]) Catch NumberFormatException? when parsing Double values.

Closes #6899.

comment:5 Changed 8 years ago by Melissa Linkert <melissa@…>

(In [0f9668577509bdd573cc493650e324e24d03fb4c/bioformats.git]) Catch NumberFormatException? when parsing Double values.

Closes #6899.
(cherry picked from commit de2c6ab6ffc7547d3a9e01d600635e261053150d)

comment:6 Changed 8 years ago by Melissa Linkert <melissa@…>

(In [0f9668577509bdd573cc493650e324e24d03fb4c/bioformats.git]) Catch NumberFormatException? when parsing Double values.

Closes #6899.
(cherry picked from commit de2c6ab6ffc7547d3a9e01d600635e261053150d)

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