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Task #7325 (new)

Opened 9 years ago

Last modified 9 years ago

Bug: bin/omero admin restart - failed — at Version 5

Reported by: wmoore Owned by: jmoore
Priority: major Milestone: OMERO-4.4
Component: Deployment Version: n.a.
Keywords: n.a. Cc: cxallan, jburel
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description (last modified by jmoore)

After opening my laptop...

See comments for diagnostics and $ ps aux

jrs-macbookpro-25107:OMERO will$ omero admin restart
error: node `master' couldn't be reached:
the node is not active
Was the server already stopped?
Waiting on shutdown. Use CTRL-C to exit
.............................
Failed to shutdown some components after 5 minutes
jrs-macbookpro-25107:OMERO will$ omero admin start
Server already running
jrs-macbookpro-25107:OMERO will$ omero admin diagnostics

See separate but perhaps related issues below for which the solution may be to include retries on certain types of failures.

Change History (5)

comment:1 Changed 9 years ago by wmoore

jrs-macbookpro-25107:OMERO will$ ps auxw
USER       PID  %CPU %MEM      VSZ    RSS   TT  STAT STARTED      TIME COMMAND
will     73605   7.2  4.4  4306468 369220   ??  S     3:33pm  14:46.81 /Applications/Firefox.app/Contents/MacOS/firefox -foreground
will     73638   1.7  0.9   641356  71620   ??  S     3:45pm   1:26.52 /Applications/Firefox.app/Contents/MacOS/plugin-container.app/Contents/MacOS/plugin-container /Library/Internet Plug-Ins/Flash Player.plugin -greomni /Applicat
_windowserver    70   1.6  3.8  3494576 318352   ??  Ss   14Oct11 334:49.04 /System/Library/Frameworks/ApplicationServices.framework/Frameworks/CoreGraphics.framework/Resources/WindowServer -daemon
will     73777   0.7  3.5  3182704 289444   ??  S     9:32pm   1:19.62 /usr/bin/java -Xmx256M -Djava.awt.headless=true -Dlog4j.configuration=etc/log4j-indexing.xml -Domero.logfile=var/log/${omero.name}.log -Domero.name=Indexer-0 -
will     73781   0.4  4.9  3191024 413692   ??  S     9:32pm   1:21.22 /usr/bin/java -Xmx256M -Djava.awt.headless=true -Dlog4j.configuration=etc/log4j-indexing.xml -Domero.logfile=var/log/${omero.name}.log -Domero.name=PixelData-0
will       185   0.3  1.0  2885704  85716   ??  R    14Oct11  11:37.40 /Applications/Utilities/Terminal.app/Contents/MacOS/Terminal -psn_0_81940
will     73774   0.3  5.5  3526992 463028   ??  S     9:32pm   1:42.65 /usr/bin/java -Xmx512M -XX:MaxPermSize=128m -Djava.awt.headless=true -Dlog4j.configuration=etc/log4j.xml -Domero.logfile=var/log/${omero.name}.log -Domero.name
will     74179   0.2  0.6  2561660  53564 s000  S+   11:20pm   1:19.52 /Users/will/apps/OMERO.libs/bin/python manage.py runserver 0.0.0.0:8000
will     73801   0.1  0.1  2446780   8256   ??  Ss    9:32pm   0:05.58 postgres: omero omero 127.0.0.1(61326) idle    
will     73783   0.1  0.5  2553748  38024   ??  S     9:32pm   0:14.57 python lib/python/runTables.py --Ice.Config=/Users/will/Desktop/OMERO/dist/var/master/servers/Tables-0/config/config
will     73800   0.1  0.1  2447548   9724   ??  Ss    9:32pm   0:04.04 postgres: omero omero 127.0.0.1(61323) idle    
will      8408   0.1  0.2   568068  17636   ??  S    19Oct11  35:33.43 /Applications/Snapz Pro X/Snapz Pro X.app/Contents/MacOS/Snapz Pro X -psn_0_1511793
will     73782   0.1  0.5  2553772  38644   ??  S     9:32pm   0:14.61 python lib/python/runProcessor.py --Ice.Config=/Users/will/Desktop/OMERO/dist/var/master/servers/Processor-0/config/config
will     70005   0.0  0.4  2470688  33916 s000  S+   Wed08am   0:00.54 python manage.py runserver 0.0.0.0:8000
will     67695   0.0  0.0  2435548   1132 s004  S    Tue09am   0:00.03 -bash
root     67694   0.0  0.0  2436216   1644 s004  Ss   Tue09am   0:00.03 login -pf will
will     67687   0.0  0.0  2434976    604 s002  S+   Tue09am   0:00.03 more
will     66020   0.0  0.0  2435548   1132 s003  S+   Mon09pm   0:00.08 -bash
root     66019   0.0  0.0  2436216   1644 s003  Ss   Mon09pm   0:00.02 login -pf will
will     63942   0.0  0.0  2435548   1096 s005  S+   Mon09am   0:00.01 -bash
root     63941   0.0  0.0  2436216   1644 s005  Ss   Mon09am   0:00.02 login -pf will
will     63877   0.0  4.5   924692 377068   ??  S    Mon09am  15:56.86 /Applications/TextMate.app/Contents/MacOS/TextMate -psn_0_6608461
will     61264   0.0  0.7  2590216  58636   ??  SNs  Fri09pm   0:32.71 /System/Library/Frameworks/CoreServices.framework/Frameworks/Metadata.framework/Versions/A/Support/mdworker MDSImporterWorker com.apple.Spotlight.ImporterWorke
will     61195   0.0  0.3  2836852  21980   ??  S    Fri09pm   0:19.52 /System/Library/CoreServices/SystemUIServer.app/Contents/MacOS/SystemUIServer
will     58467   0.0  0.2  2830332  15580   ??  S    Fri12pm   0:03.97 /Applications/Stickies.app/Contents/MacOS/Stickies -psn_0_6161888
will     57767   0.0  0.0  2435548   1104 s000  S    Fri09am   0:00.01 -bash
root     57766   0.0  0.0  2436216   1644 s000  Ss   Fri09am   0:00.01 login -pf will
will     40085   0.0  1.3   692384 111228   ??  S     9Nov11  26:09.98 /Applications/Adium.app/Contents/MacOS/Adium -psn_0_4809878
will     38850   0.0  0.1  2447652   7076   ??  Ss    7Nov11   0:00.05 postgres: will omero [local] idle    
will     38848   0.0  0.0  2436880   1992 s002  S+    7Nov11   0:00.04 psql omero
_www     28053   0.0  0.0  2438072    584   ??  S    31Oct11   0:00.00 /usr/sbin/httpd -D FOREGROUND
_www     28044   0.0  0.0  2438072   1464   ??  S    31Oct11   0:00.01 /usr/sbin/httpd -D FOREGROUND
root     28040   0.0  0.0  2438072   1996   ??  Ss   31Oct11   0:19.30 /usr/sbin/httpd -D FOREGROUND
will     16596   0.0  0.0  2435548    772 s002  S    25Oct11   0:00.19 -bash
root     16595   0.0  0.0  2436216    752 s002  Ss   25Oct11   0:00.01 login -pf will
will      7864   0.0  0.0  2435548    968 s001  S    19Oct11   0:03.86 -bash
root      7863   0.0  0.0  2436216    752 s001  Ss   19Oct11   0:00.01 login -pf will
will       682   0.0  2.3  4147296 189304   ??  S    14Oct11  45:49.43 /Applications/Mail.app/Contents/MacOS/Mail -psn_0_114716
will       336   0.0  0.0  2485208   1568   ??  S    14Oct11   0:04.60 /usr/bin/ssh-agent -l
will       284   0.0  0.2  2529632  12900   ??  S    14Oct11   1:31.89 /System/Library/Services/AppleSpell.service/Contents/MacOS/AppleSpell -psn_0_106522
will       167   0.0  0.0  2441760    404   ??  Ss   14Oct11   0:59.11 postgres: stats collector process       
will       166   0.0  0.0  2445860   3900   ??  Ss   14Oct11   0:40.29 postgres: autovacuum launcher process       
will       165   0.0  0.0  2445728    384   ??  Ss   14Oct11   2:30.23 postgres: wal writer process       
will       164   0.0  0.0  2445728   3436   ??  Ss   14Oct11   3:31.57 postgres: writer process       
root       155   0.0  0.0   427400   2804   ??  S    14Oct11   0:12.09 /Library/KeyAccess/KeyAccess.app/Contents/SharedSupport/kass.app/Contents/MacOS/kass -psn_0_65552
will       151   0.0  0.0  2771432   1788   ??  S    14Oct11   0:05.67 /System/Library/CoreServices/RemoteManagement/AppleVNCServer.bundle/Contents/MacOS/AppleVNCServer
will       145   0.0  0.0  2445728   1364   ??  S    14Oct11   0:09.42 /usr/local/Cellar/postgresql/9.0.4/bin/postgres -D /usr/local/var/postgres -r /usr/local/var/postgres/server.log
will       143   0.0  0.1   431464   5240   ??  S    14Oct11   2:08.26 /Library/KeyAccess/KeyAccess.app/Contents/MacOS/KeyAccess
will       142   0.0  0.0   464856   1932   ??  S    14Oct11   0:42.65 /Library/Printers/Canon/UFR2/Utilities/UFR II BackGrounder.app/Contents/MacOS/UFR II BackGrounder
will       141   0.0  0.0  2809256   3200   ??  S    14Oct11   0:05.47 /System/Library/CoreServices/AirPort Base Station Agent.app/Contents/MacOS/AirPort Base Station Agent -launchd -allowquit
will       136   0.0  0.1  2790592   7180   ??  S    14Oct11   1:20.89 /System/Library/CoreServices/RemoteManagement/ARDAgent.app/Contents/MacOS/ARDAgent
will       133   0.0  0.1  2798916   7740   ??  S    14Oct11   0:10.15 /usr/libexec/UserEventAgent -l Aqua
will       126   0.0  0.2  2754492  20016   ??  S    14Oct11   0:59.14 /System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Support/fontd
will       124   0.0  0.0  2436088    552   ??  S    14Oct11   0:00.02 /usr/sbin/pboard
will       122   0.0  1.4  3060200 116524   ??  S    14Oct11   9:47.25 /System/Library/CoreServices/Finder.app/Contents/MacOS/Finder
will       120   0.0  0.3  2887940  27276   ??  S    14Oct11  33:22.42 /System/Library/CoreServices/Dock.app/Contents/MacOS/Dock
will       116   0.0  0.0  2511668   1364   ??  Ss   14Oct11   0:36.72 /sbin/launchd
_coreaudiod    99   0.0  0.1  2517712   8480   ??  Ss   14Oct11   0:23.40 /usr/sbin/coreaudiod
root        85   0.0  0.0  2444508    864   ??  Ss   14Oct11   0:00.07 /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/cvmsServ
root        52   0.0  0.0   160460   3656   ??  Ss   14Oct11   0:27.35 /Library/KeyAccess/KeyAccess.app/Contents/SharedSupport/karl.app/Contents/MacOS/karl -c
root        49   0.0  0.0  2461692    820   ??  Ss   14Oct11   0:03.70 autofsd
root        43   0.0  0.0  2434864    496   ??  Ss   14Oct11   0:00.11 /sbin/dynamic_pager -F /private/var/vm/swapfile
root        41   0.0  0.1  2510044   5188   ??  Ss   14Oct11   1:52.84 /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/Support/fseventsd
root        40   0.0  0.0  2485172   1868   ??  Ss   14Oct11  31:20.65 /usr/libexec/hidd
root        38   0.0  0.0  2486364    984   ??  Ss   14Oct11   0:09.28 /usr/sbin/KernelEventAgent
will        37   0.0  0.1  2850012   9908   ??  Ss   14Oct11   2:12.81 /System/Library/CoreServices/loginwindow.app/Contents/MacOS/loginwindow console
root        36   0.0  2.1  2921032 173580   ??  Ss   14Oct11  21:49.53 /System/Library/Frameworks/CoreServices.framework/Frameworks/Metadata.framework/Support/mds
root        34   0.0  0.0  2444888    688   ??  Ss   14Oct11   0:00.01 /System/Library/CoreServices/RemoteManagement/AppleVNCServer.bundle/Contents/Support/RFBRegisterMDNS
root        30   0.0  0.0  2466304    752   ??  Ss   14Oct11   0:04.35 /sbin/SystemStarter
_usbmuxd    29   0.0  0.0  2474744   1232   ??  Ss   14Oct11   0:35.67 /System/Library/PrivateFrameworks/MobileDevice.framework/Versions/A/Resources/usbmuxd -launchd
root        26   0.0  0.0  2435292    852   ??  Ss   14Oct11   1:00.91 /usr/sbin/ntpd -c /private/etc/ntp-restrict.conf -n -g -p /var/run/ntpd.pid -f /var/db/ntp.drift
root        24   0.0  0.5  2566212  45940   ??  Ss   14Oct11   1:19.55 /System/Library/CoreServices/coreservicesd
root        22   0.0  0.1  2515260   4688   ??  Ss   14Oct11   0:08.01 /usr/sbin/securityd -i
_mdnsresponder    18   0.0  0.0  2516888   3036   ??  Ss   14Oct11   0:46.69 /usr/sbin/mDNSResponder -launchd
daemon      17   0.0  0.0  2508260   2776   ??  Ss   14Oct11   0:37.59 /usr/sbin/distnoted
root        16   0.0  0.0  2522832   3256   ??  Ss   14Oct11   0:22.75 /usr/sbin/blued
root        15   0.0  0.0  2512552    924   ??  Ss   14Oct11   0:07.14 /usr/sbin/syslogd
root        14   0.0  0.0  2526000   4100   ??  Ss   14Oct11   1:37.81 /usr/libexec/configd
root        13   0.0  0.0  2508408   1924   ??  Ss   14Oct11   0:05.98 /usr/sbin/diskarbitrationd
root        12   0.0  0.0  2467152    624   ??  Ss   14Oct11   0:11.27 /usr/sbin/notifyd
root        11   0.0  0.1  2517180   7468   ??  Rs   14Oct11   1:43.04 /usr/sbin/DirectoryService
root        10   0.0  0.2  2514496  12784   ??  Ss   14Oct11   0:20.96 /usr/libexec/kextd
root         1   0.0  0.0  2512136   1496   ??  Ss   14Oct11  30:24.66 /sbin/launchd
root     74715   0.0  0.0  2434868    564 s001  R+    8:57am   0:00.00 ps auxw
root      8431   0.0  0.0        0      0   ??  Z    19Oct11   0:00.00 (tee)
will     74711   0.0  0.1  2446116   5236   ??  Ss    8:56am   0:00.01 postgres: omero omero 127.0.0.1(64478) idle    
will     74679   0.0  1.4  3733348 119016   ??  S     8:52am   0:03.71 /Users/will/Desktop/OMERO.clients-Beta4.3.3.mac/OMERO.insight.app/Contents/MacOS/JavaApplicationStub -psn_0_7604032
_spotlight 73883   0.0  0.1  2525764   6376   ??  SNs   9:58pm   0:00.30 /System/Library/Frameworks/CoreServices.framework/Frameworks/Metadata.framework/Versions/A/Support/mdworker MDSImporterWorker com.apple.Spotlight.ImporterWorke
will     73815   0.0  0.1  2811012   9320   ??  S     9:35pm   0:01.84 /Applications/Preview.app/Contents/MacOS/Preview -psn_0_7558965
will     73780   0.0  0.1  2517296   5924   ??  S     9:32pm   0:00.26 icebox --Ice.Config=/Users/will/Desktop/OMERO/dist/var/master/servers/OMERO.IceStorm/config/config
will     73779   0.0  0.1  2508896   4580   ??  S     9:32pm   0:00.72 glacier2router --Ice.Config=/Users/will/Desktop/OMERO/dist/var/master/servers/OMERO.Glacier2/config/config
will     73776   0.0  0.1  2481960  12148   ??  S     9:32pm   0:01.29 python lib/python/fsServerFS.py --Ice.Config=/Users/will/Desktop/OMERO/dist/var/master/servers/FileServer/config/config
will     73772   0.0  0.1  2526880   8416   ??  S     9:32pm   0:00.85 icegridnode --daemon --pidfile /Users/will/Desktop/OMERO/dist/var/master/master.pid --nochdir --Ice.Config=/Users/will/Desktop/OMERO/dist/etc/internal.cfg,/Use
will     72441   0.0  0.0  2438800   3696 s004  S+   10:40am   0:00.02 python
will     72146   0.0  0.3  2836016  25680   ??  S     9:29am   0:01.07 /Applications/iCal.app/Contents/MacOS/iCal -psn_0_7362309
will     71056   0.0  1.3  3969772 109708   ??  S    Wed03pm   0:30.53 /System/Library/PrivateFrameworks/WebKit2.framework/WebProcess.app/Contents/MacOS/WebProcess /System/Library/PrivateFrameworks/WebKit2.framework/WebKit2 -type 
will     71054   0.0  0.6  2903456  49332   ??  S    Wed03pm   0:39.86 /Applications/Safari.app/Contents/MacOS/Safari -psn_0_7227108

comment:2 Changed 9 years ago by wmoore

  • Owner set to jmoore
================================================================================
OMERO Diagnostics 4.3.3
================================================================================
        
Commands:   java -version                  1.6.0     (/usr/bin/java)
Commands:   python -V                      2.6.1     (/Users/will/apps/OMERO.libs/bin/python -- 2 others)
Commands:   icegridnode --version          3.3.1     (/Users/will/apps/OMERO.libs/bin/icegridnode)
Commands:   icegridadmin --version         3.3.1     (/Users/will/apps/OMERO.libs/bin/icegridadmin)
Commands:   psql --version                 9.0.4     (/usr/local/bin/psql)

Server:     icegridnode                    running
Server:     Blitz-0                        active (pid = 73774, enabled)
Server:     DropBox                        inactive (disabled)
Server:     FileServer                     active (pid = 73776, enabled)
Server:     Indexer-0                      active (pid = 73777, enabled)
Server:     MonitorServer                  inactive (disabled)
Server:     OMERO.Glacier2                 active (pid = 73779, enabled)
Server:     OMERO.IceStorm                 active (pid = 73780, enabled)
Server:     PixelData-0                    active (pid = 73781, enabled)
Server:     Processor-0                    active (pid = 73782, enabled)
Server:     Tables-0                       active (pid = 73783, enabled)
Server:     TestDropBox                    inactive (enabled)

Log dir:    /Users/will/Desktop/OMERO/dist/var/log exists

Log files:  Blitz-0.log                    29.0 MB       errors=55   warnings=541 
Log files:  DropBox.log                    12.0 KB       errors=10   warnings=0   
Log files:  FileServer.log                 3.0 KB       
Log files:  Indexer-0.log                  42.0 KB      
Log files:  MonitorServer.log              8.0 KB        errors=10   warnings=0   
Log files:  OMEROweb.log                   1.0 MB        errors=218  warnings=1   
Log files:  PixelData-0.log                25.0 KB       errors=1    warnings=0   
Log files:  Processor-0.log                874.0 KB      errors=0    warnings=329 
Log files:  Tables-0.log                   224.0 KB      errors=0    warnings=319 
Log files:  TestDropBox.log                n/a
Log files:  master.err                     0.0 KB       
Log files:  master.out                     0.0 KB       
Log files:  Total size                     32.07 MB

Parsing Blitz-0.log:[line:30] => Server restarted <= 
Parsing Blitz-0.log:[line:50225] => Server restarted <= 
Parsing Blitz-0.log:[line:53714] => Server restarted <= 
Parsing Blitz-0.log:[line:64630] => Server restarted <= 
Parsing Blitz-0.log:[line:79985] => Server restarted <= 
Parsing Blitz-0.log:[line:85793] => Server restarted <= 
Parsing Blitz-0.log:[line:96678] => Server restarted <= 
Parsing Blitz-0.log:[line:100911] => Server restarted <= 
Parsing Blitz-0.log:[line:170752] => Server restarted <= 
Parsing Blitz-0.log:[line:172077] => Server restarted <= 

Environment:OMERO_HOME=/Users/will/Desktop/OMERO/dist 
Environment:OMERO_NODE=(unset)             
Environment:OMERO_MASTER=(unset)           
Environment:PATH=/Users/will/apps/OMERO.libs/Cellar/zeroc-ice33/bin:/usr/local/bin:/Users/will/apps/OMERO.libs/bin:/usr/local/lib/node_modules:/Users/will/Desktop/OMERO/dist/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin:/Applications/gitflow/ 
Environment:ICE_HOME=/Users/will/apps/OMERO.libs/Cellar/zeroc-ice33 
Environment:LD_LIBRARY_PATH=(unset)        
Environment:DYLD_LIBRARY_PATH=:/Users/will/apps/OMERO.libs/lib 

OMERO data dir: '/OMERO'	Exists? True	Is writable? True
OMERO.web status... Traceback (most recent call last):
  File "/Users/will/Desktop/OMERO/dist/bin/omero", line 123, in <module>
    rv = omero.cli.argv()
  File "/Users/will/Desktop/OMERO/dist/lib/python/omero/cli.py", line 1172, in argv
    cli.invoke(args[1:])
  File "/Users/will/Desktop/OMERO/dist/lib/python/omero/cli.py", line 722, in invoke
    stop = self.onecmd(line, previous_args)
  File "/Users/will/Desktop/OMERO/dist/lib/python/omero/cli.py", line 791, in onecmd
    self.execute(line, previous_args)
  File "/Users/will/Desktop/OMERO/dist/lib/python/omero/cli.py", line 871, in execute
    args.func(args)
  File "/Users/will/Desktop/OMERO/dist/lib/python/omero/plugins/prefs.py", line 67, in open_and_close_config
    return func(*args, **kwargs)
  File "/Users/will/Desktop/OMERO/dist/lib/python/omero/plugins/admin.py", line 780, in diagnostics
    WebControl().status(args)
  File "/Users/will/Desktop/OMERO/dist/lib/python/omero/plugins/web.py", line 391, in status
    import omeroweb.settings as settings
ImportError: No module named omeroweb.settings
jrs-macbookpro-25107:OMERO will$ omero config get
omero.web.application_server=development
omero.web.debug=True

comment:3 Changed 9 years ago by wmoore

Another restart problem. This is some work at home with a dodgy internect connection - probably caused the need to restart with IP address change? Then tried restarting the next morning at work (last 2 restarts).

jrs-macbookpro-25107:OMERO will$ omero admin restart
error: node `master' couldn't be reached:
the node is not active
Was the server already stopped?
Waiting on shutdown. Use CTRL-C to exit
.............................
Failed to shutdown some components after 5 minutes
jrs-macbookpro-25107:OMERO will$ omero admin stop
Waiting on shutdown. Use CTRL-C to exit
.jrs-macbookpro-25107:OMERO will$ omero admin start
No descriptor given. Using etc/grid/default.xml
Waiting on startup. Use CTRL-C to exit
jrs-macbookpro-25107:OMERO will$ omero config set omero.sessions.timeout 20000
jrs-macbookpro-25107:OMERO will$ omero admin restart
Waiting on shutdown. Use CTRL-C to exit
.No descriptor given. Using etc/grid/default.xml
Waiting on startup. Use CTRL-C to exit
jrs-macbookpro-25107:OMERO will$ omero admin restart
Waiting on shutdown. Use CTRL-C to exit
.No descriptor given. Using etc/grid/default.xml
Waiting on startup. Use CTRL-C to exit
jrs-macbookpro-25107:OMERO will$ tail -f dist/var/log/Blitz-0.log 
2011-12-07 23:07:39,004 INFO  [        ome.services.util.ServiceHandler] (l.Server-9)  Args:	[select distinct obj from Experimenter as obj left outer join fetch obj.groupExperimenterMap as map left outer join fetch map.parent g where obj.id in (:ids), PARAMS:ids=ArrayList(1) ]
2011-12-07 23:07:39,005 INFO  [         ome.security.basic.EventHandler] (l.Server-9)  Auth:	user=2,group=3,event=null(User),sess=5ef34d52-1c6f-4020-b3d6-8567e386ac98
2011-12-07 23:07:39,009 INFO  [                 org.perf4j.TimingLogger] (l.Server-9) start[1323299259004] time[5] tag[omero.call.success.ome.logic.QueryImpl.findByQuery]
2011-12-07 23:07:39,009 INFO  [        ome.services.util.ServiceHandler] (l.Server-9)  Rslt:	ome.model.meta.Experimenter:Id_2
2011-12-07 23:07:39,013 INFO  [e.services.sessions.SessionContext$Count] (l.Server-5) -Reference count: 14831435-ff56-46b6-97b3-1f7db16e0847=0
2011-12-07 23:07:39,014 INFO  [        ome.services.util.ServiceHandler] (l.Server-0)  Meth:	interface ome.api.IAdmin.lookupGroup
2011-12-07 23:07:39,014 INFO  [        ome.services.util.ServiceHandler] (l.Server-0)  Args:	[user]
2011-12-07 23:07:39,015 INFO  [         ome.security.basic.EventHandler] (l.Server-0)  Auth:	user=2,group=3,event=null(User),sess=5ef34d52-1c6f-4020-b3d6-8567e386ac98
2011-12-07 23:07:39,039 INFO  [                 org.perf4j.TimingLogger] (l.Server-0) start[1323299259014] time[25] tag[omero.call.success.ome.logic.AdminImpl.lookupGroup]
2011-12-07 23:07:39,039 INFO  [        ome.services.util.ServiceHandler] (l.Server-0)  Rslt:	ome.model.meta.ExperimenterGroup:Id_1
2011-12-07 23:08:30,035 INFO  [        ome.services.util.ServiceHandler] (l.Server-1)  Executor.doWork -- ome.services.sessions.SessionManagerImpl.createSession
2011-12-07 23:08:30,035 INFO  [        ome.services.util.ServiceHandler] (l.Server-1)  Args:	[null, InternalSF@1225998403]
2011-12-07 23:08:30,036 INFO  [        ome.services.util.ServiceHandler] (l.Server-2)  Executor.doWork -- ome.services.sessions.SessionManagerImpl.createSession
2011-12-07 23:08:30,036 INFO  [        ome.services.util.ServiceHandler] (l.Server-2)  Args:	[null, InternalSF@1225998403]
2011-12-07 23:08:30,046 INFO  [         ome.security.basic.EventHandler] (l.Server-1)  Auth:	user=0,group=0,event=51131(Sessions),sess=8ef97cbc-3a22-43e7-a3b6-4905dd252829
2011-12-07 23:08:30,046 INFO  [         ome.security.basic.EventHandler] (l.Server-2)  Auth:	user=0,group=0,event=51132(Sessions),sess=8ef97cbc-3a22-43e7-a3b6-4905dd252829
2011-12-07 23:08:30,057 INFO  [       ome.security.basic.CurrentDetails] (l.Server-1) Adding log:INSERT,class ome.model.meta.Session,14271
2011-12-07 23:08:30,057 INFO  [       ome.security.basic.CurrentDetails] (l.Server-2) Adding log:INSERT,class ome.model.meta.Session,14272
2011-12-07 23:08:30,067 INFO  [                 org.perf4j.TimingLogger] (l.Server-1) start[1323299310035] time[32] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$2.doWork]
2011-12-07 23:08:30,067 INFO  [        ome.services.util.ServiceHandler] (l.Server-1)  Rslt:	(ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
2011-12-07 23:08:30,067 INFO  [                 org.perf4j.TimingLogger] (l.Server-2) start[1323299310036] time[31] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$2.doWork]
2011-12-07 23:08:30,067 INFO  [        ome.services.util.ServiceHandler] (l.Server-2)  Rslt:	(ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more)
2011-12-07 23:08:30,068 INFO  [ ome.services.blitz.fire.SessionManagerI] (l.Server-1) Created session ServiceFactoryI(session-4c1a3040-c157-4aec-aa5a-3d75e05ada8e/e015e67d-5b49-4302-82c4-14a8fc08ba77) for user root (agent=Python service)
2011-12-07 23:08:30,068 INFO  [ ome.services.blitz.fire.SessionManagerI] (l.Server-2) Created session ServiceFactoryI(session-ee18ac57-d52b-4e94-a55d-f62509fed456/55102c50-27c8-4d03-8b15-276da0e99186) for user root (agent=Python service)
2011-12-07 23:08:30,069 INFO  [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-0) Added servant to adapter: 55102c50-27c8-4d03-8b15-276da0e99186/ee18ac57-d52b-4e94-a55d-f62509fed456omero.grid.SharedResources(omero.grid._SharedResourcesTie@49e3c996)
2011-12-07 23:08:53,833 INFO  [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-7) Added servant to adapter: 5ef34d52-1c6f-4020-b3d6-8567e386ac98/f8e4838e-517e-4c8e-8053-d0bf21a69da9omero.api.IConfig(omero.api._IConfigTie@1833b96c)
2011-12-07 23:09:00,018 INFO  [ ome.services.blitz.fire.SessionManagerI] (3-thread-1) Performing requestHeartbeats
^C
jrs-macbookpro-25107:OMERO will$ git status
# On branch ajax_helper
# Changes not staged for commit:
#   (use "git add <file>..." to update what will be committed)
#   (use "git checkout -- <file>..." to discard changes in working directory)
#
#	modified:   components/tools/OmeroWeb/omeroweb/common/static/common/javascript/popup.js
#	modified:   components/tools/OmeroWeb/omeroweb/webclient/templates/webclient/annotations/metadata_general.html
#
no changes added to commit (use "git add" and/or "git commit -a")
jrs-macbookpro-25107:OMERO will$ omero admin restart
Waiting on shutdown. Use CTRL-C to exit
......No descriptor given. Using etc/grid/default.xml
icegridnode: failure occurred in daemon:
service caught unhandled Ice exception:
FileUtil.cpp:477: IceUtil::FileLockedException:
could not lock file: `var/registry/__Freeze/lock'
syscall exception: Resource temporarily unavailable
jrs-macbookpro-25107:OMERO will$ omero admin restart
Server not running
No descriptor given. Using etc/grid/default.xml
Waiting on startup. Use CTRL-C to exit
jrs-macbookpro-25107:OMERO will$ 

comment:4 Changed 9 years ago by wmoore

master.err for restart above

jrs-macbookpro-25107:OMERO will$ cat dist/var/log/master.err 
-! 12/2/11 09:26:37:548 warning: Blitz-0-Ice.ThreadPool.Server-6: dispatch exception:
   identity: session-aba9b137-b6ac-4baf-84f9-d6e254edc562/a4a6d8ac-fd16-4306-bc09-d846d39fb82e
   facet: 
   operation: destroy
   remote host: 10.12.2.172 remote port: 61057
   Ice.ObjectAdapterDeactivatedException
       name = "BlitzAdapter"
   	at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1121)
   	at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:505)
   	at Ice.ObjectAdapterI.find(ObjectAdapterI.java:499)
   	at ome.services.blitz.impl.ServiceFactoryI.unregisterServant(ServiceFactoryI.java:1005)
   	at ome.services.blitz.impl.ServiceFactoryI.doDestroy(ServiceFactoryI.java:801)
   	at ome.services.blitz.impl.ServiceFactoryI.destroy(ServiceFactoryI.java:703)
   	at Glacier2._SessionDisp.___destroy(_SessionDisp.java:104)
   	at omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1412)
   	at IceInternal.Incoming.invoke(Incoming.java:159)
   	at Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
   	at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
   	at Ice.ConnectionI.message(ConnectionI.java:1163)
   	at IceInternal.ThreadPool.run(ThreadPool.java:302)
   	at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
   	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
   	at java.lang.Thread.run(Thread.java:680)
   
-! 12/2/11 09:26:37:548 warning: Blitz-0-Ice.ThreadPool.Server-5: dispatch exception:
   identity: session-d1004155-2312-4e2d-9042-a3d79f83a18a/59d84cf8-ee11-44a3-9b02-0391ccc4cca8
   facet: 
   operation: destroy
   remote host: 10.12.2.172 remote port: 61054
   Ice.ObjectAdapterDeactivatedException
       name = "BlitzAdapter"
   	at Ice.ObjectAdapterI.checkForDeactivation(ObjectAdapterI.java:1121)
   	at Ice.ObjectAdapterI.findFacet(ObjectAdapterI.java:505)
   	at Ice.ObjectAdapterI.find(ObjectAdapterI.java:499)
   	at ome.services.blitz.impl.ServiceFactoryI.unregisterServant(ServiceFactoryI.java:1005)
   	at ome.services.blitz.impl.ServiceFactoryI.doDestroy(ServiceFactoryI.java:801)
   	at ome.services.blitz.impl.ServiceFactoryI.destroy(ServiceFactoryI.java:703)
   	at Glacier2._SessionDisp.___destroy(_SessionDisp.java:104)
   	at omero.api._ServiceFactoryDisp.__dispatch(_ServiceFactoryDisp.java:1412)
   	at IceInternal.Incoming.invoke(Incoming.java:159)
   	at Ice.ConnectionI.invokeAll(ConnectionI.java:2357)
   	at Ice.ConnectionI.dispatch(ConnectionI.java:1208)
   	at Ice.ConnectionI.message(ConnectionI.java:1163)
   	at IceInternal.ThreadPool.run(ThreadPool.java:302)
   	at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
   	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643)
   	at java.lang.Thread.run(Thread.java:680)
   
!! 12/03/11 21:01:41.518 icegridnode: error: service caught unhandled Ice exception:
   FileUtil.cpp:477: IceUtil::FileLockedException:
   could not lock file: `var/registry/__Freeze/lock'
   syscall exception: Resource temporarily unavailable
-! 12/04/11 08:08:59.944 OMERO.Glacier2: warning: dispatch exception: Network.cpp:1178: Ice::ConnectFailedException:
   connect failed: No route to host
   identity: session-71ca903c-cd65-49b5-a224-b60676209eec/8322950c-2c74-4bda-9810-f9398c25d47d
   facet: 
   operation: keepAllAlive
   remote host: 127.0.0.1 remote port: 51739
-! 12/04/11 08:08:59.955 OMERO.Glacier2: warning: dispatch exception: Network.cpp:1178: Ice::ConnectFailedException:
   connect failed: No route to host
   identity: session-63dbf2f0-9c1e-4425-b624-d09f08e0b1ea/8322950c-2c74-4bda-9810-f9398c25d47d
   facet: 
   operation: keepAllAlive
   remote host: 127.0.0.1 remote port: 51742
-! 12/04/11 08:10:04.957 OMERO.Glacier2: warning: dispatch exception: Network.cpp:1184: Ice::SocketException:
   socket exception: Host is down
   identity: session-71ca903c-cd65-49b5-a224-b60676209eec/8322950c-2c74-4bda-9810-f9398c25d47d
   facet: 
   operation: keepAllAlive
   remote host: 127.0.0.1 remote port: 51739
-! 12/04/11 08:10:04.958 OMERO.Glacier2: warning: dispatch exception: Network.cpp:1184: Ice::SocketException:
   socket exception: Host is down
   identity: session-63dbf2f0-9c1e-4425-b624-d09f08e0b1ea/8322950c-2c74-4bda-9810-f9398c25d47d
   facet: 
   operation: keepAllAlive
   remote host: 127.0.0.1 remote port: 51742
!! 12/08/11 09:43:45.229 icegridnode: error: service caught unhandled Ice exception:
   FileUtil.cpp:477: IceUtil::FileLockedException:
   could not lock file: `var/registry/__Freeze/lock'
   syscall exception: Resource temporarily unavailable

comment:5 Changed 9 years ago by jmoore

  • Description modified (diff)
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