Task #7335 (closed)
BUG:tif import
| Reported by: | omero-qa | Owned by: | cxallan |
|---|---|---|---|
| Priority: | minor | Milestone: | OMERO-4.4 |
| Component: | from QA | Version: | n.a. |
| Keywords: | n.a. | Cc: | Kim.Linton@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | n.a. |
Description
http://qa.openmicroscopy.org.uk/qa/feedback/4054/
Comment: Hi There,
I tried to import this file and it failed. I am not sure why. Can you please help?
Cheers,
Kim Linton
Unable to locate Pixels:1 at ome.formats.model.ChannelProcessor.process(ChannelProcessor.java:444) at ome.formats.OMEROMetadataStoreClient.postProcess(OMEROMetadataStoreClient.java:2101) at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:349) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:537) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6402) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1191) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680)
Change History (3)
comment:1 Changed 8 years ago by jburel
- Milestone changed from Unscheduled to OMERO-Beta4.4
- Summary changed from BUG:Lif import to BUG:tif import
comment:2 Changed 8 years ago by Melissa Linkert <melissa@…>
- Remaining Time set to 0
- Resolution set to fixed
- Status changed from new to closed
comment:3 Changed 8 years ago by Melissa Linkert <melissa@…>
(In [2cf49a6963f99017c0017001192de6346c3ce3e5/bioformats.git]) Do not set names for Images that do not exist
The file sometimes contains labels for many more layers than are really
usable. These extra labels are now ignored, so that we do not end up
creating a bunch of nearly empty Images (thus causing OME-XML validation
and OMERO import to fail).
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(In [2cf49a6963f99017c0017001192de6346c3ce3e5/bioformats.git]) Do not set names for Images that do not exist
The file sometimes contains labels for many more layers than are really
usable. These extra labels are now ignored, so that we do not end up
creating a bunch of nearly empty Images (thus causing OME-XML validation
and OMERO import to fail).
Closes #7335, closes #7337.