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Task #7337 (closed)

Opened 12 years ago

Closed 12 years ago

Last modified 12 years ago

BUG:Feedback 4054

Reported by: omero-qa Owned by: mlinkert
Priority: minor Milestone: Unscheduled
Component: from QA Version: n.a.
Keywords: n.a. Cc: Kim.Linton@…, saloynton
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: n.a.

Description

​http://qa.openmicroscopy.org.uk/qa/feedback/4054/


Unable to locate Pixels:1
	at ome.formats.model.ChannelProcessor.process(ChannelProcessor.java:444)
	at ome.formats.OMEROMetadataStoreClient.postProcess(OMEROMetadataStoreClient.java:2101)
	at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:349)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:537)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6402)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1191)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)

Change History (2)

comment:1 Changed 12 years ago by Melissa Linkert <melissa@…>

  • Remaining Time set to 0
  • Resolution set to fixed
  • Status changed from new to closed

(In [2cf49a6963f99017c0017001192de6346c3ce3e5/bioformats.git]) Do not set names for Images that do not exist

The file sometimes contains labels for many more layers than are really
usable. These extra labels are now ignored, so that we do not end up
creating a bunch of nearly empty Images (thus causing OME-XML validation
and OMERO import to fail).

Closes #7335, closes #7337.

comment:2 Changed 12 years ago by Melissa Linkert <melissa@…>

(In [2cf49a6963f99017c0017001192de6346c3ce3e5/bioformats.git]) Do not set names for Images that do not exist

The file sometimes contains labels for many more layers than are really
usable. These extra labels are now ignored, so that we do not end up
creating a bunch of nearly empty Images (thus causing OME-XML validation
and OMERO import to fail).

Closes #7335, closes #7337.

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