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Task #7356 (closed)

Opened 12 years ago

Closed 12 years ago

Last modified 12 years ago

BUG:import mvd2

Reported by:	omero-qa	Owned by:	mlinkert
Priority:	minor	Milestone:	Unscheduled
Component:	from QA	Version:	n.a.
Keywords:	n.a.	Cc:	CJW@…, jburel, saloynton
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	0.0d
Sprint:	n.a.

Description

http://qa.openmicroscopy.org.uk/qa/feedback/4059/

Comment: This mvd2 from a perin elmer failed on import. The data folder is ~700 MB. I will gladly send it if it isn't sent with this report.

Thanks
Chris

java.lang.IllegalArgumentException
	at java.nio.Buffer.position(Unknown Source)
	at loci.common.NIOFileHandle.buffer(NIOFileHandle.java:513)
	at loci.common.NIOFileHandle.read(NIOFileHandle.java:221)
	at loci.common.NIOFileHandle.read(NIOFileHandle.java:207)
	at loci.common.RandomAccessInputStream.read(RandomAccessInputStream.java:401)
	at loci.formats.FormatReader.readPlane(FormatReader.java:406)
	at loci.formats.FormatReader.readPlane(FormatReader.java:389)
	at loci.formats.in.VolocityReader.openBytes(VolocityReader.java:192)
	at loci.formats.ImageReader.openBytes(ImageReader.java:396)
	at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:183)
	at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:209)
	at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:304)
	at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:260)
	at ome.formats.importer.ImportLibrary.writeDataTileBased(ImportLibrary.java:871)
	at ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:796)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:573)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6402)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1228)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Unknown Source)

References

Change History (4)

comment:1 Changed 12 years ago by jburel

Cc jburel saloynton added

comment:2 Changed 12 years ago by Melissa Linkert <melissa@…>

Remaining Time set to 0
Resolution set to fixed
Status changed from new to closed

(In [8d46d0c1927d4c311ad1a6d8ab2ac91d916df828/bioformats.git]) Fix bytes per pixel calculation

Closes #7356.

comment:3 Changed 12 years ago by Melissa Linkert <melissa@…>

(In [8d46d0c1927d4c311ad1a6d8ab2ac91d916df828/bioformats.git]) Fix bytes per pixel calculation

Closes #7356.

comment:4 Changed 12 years ago by saloynton

Moved to test images good

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