Task #7709 (new)
Opened 12 years ago
Last modified 10 years ago
Re-evaluate strategy for assigning channel colors
Reported by: | mlinkert | Owned by: | |
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Priority: | major | Milestone: | Unscheduled |
Component: | General | Version: | 5.0.0 |
Keywords: | n.a. | Cc: | jburel, wmoore, rleigh, cblackburn, dsudar@… |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | n.a. |
Description (last modified by jamoore)
From https://trac.openmicroscopy.org.uk/ome/ticket/3651#comment:7:
Also need to review the color selection based on wavelength:
E.g. lei/joel/sequental scan 2/
- Currently cut-off red->green is 560.
- We have two channels with emission filters: 553-618 and 665-800
- We pick wavelength as cut-in + 15 (ignore emission).
- Both these channels are therefore colored Red.
Although the above example could be fixed by adjusting the "+15" > increment to cut-in or by moving the green->red boundary, this could > easily "break" another format / example.
Color selection algorithm could be improved to order channels by > wavelength - Preferentially color Blue -> Green -> Red, instead of > color 2 channels same color.
If it's not being done already, it would also be a good idea to do something with the Channel.Color attribute, as this is now populated for a handful of formats (see #3651).
See also:
- Discussion under #4513 (marked as duplicate)
- http://www.openmicroscopy.org/community/viewtopic.php?f=4&t=7431
Change History (3)
comment:1 Changed 10 years ago by jamoore
- Cc rleigh cblackburn added; cxallan removed
- Description modified (diff)
- Priority changed from minor to major
- Version set to 5.0.0
comment:2 Changed 10 years ago by mtbcarroll
comment:3 Changed 10 years ago by mtbcarroll
- Cc dsudar@… added
In http://www.openmicroscopy.org/community/viewtopic.php?f=4&t=7431 is commented,