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Task #7733 (closed)

Opened 12 years ago

Closed 12 years ago

Last modified 12 years ago

Bug: Plate loading after import

Reported by: wmoore Owned by: jburel
Priority: major Milestone: OMERO-4.4
Component: Insight Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2012-01-17 (6)

Description (last modified by jburel)

If I import a Plate, E.g with one well "003003000.flex" then click the 'Browse' option to view the imported plate, this attempts to load ALL the wells on the plate view, even though only 1 is populated. All wells are 'invalid'. Acquisition view is OK.

Change History (11)

comment:1 Changed 12 years ago by jburel

  • Remaining Time set to 0.25

comment:2 Changed 12 years ago by jburel

  • Status changed from new to accepted

comment:3 Changed 12 years ago by jburel

  • Description modified (diff)

See #7735

comment:4 Changed 12 years ago by jburel

  • Remaining Time changed from 0.25 to 0
  • Status changed from accepted to closed

comment:5 Changed 12 years ago by saloynton

Tested but had the following exception

java.lang.Exception: Abnormal termination due to an uncaught exception.
java.lang.IllegalArgumentException: No object specified.
	at org.openmicroscopy.shoola.agents.metadata.StructuredDataLoader.<init>(StructuredDataLoader.java:74)
	at org.openmicroscopy.shoola.agents.metadata.view.MetadataViewerModel.fireStructuredDataLoading(MetadataViewerModel.java:395)
	at org.openmicroscopy.shoola.agents.metadata.view.MetadataViewerComponent.loadMetadata(MetadataViewerComponent.java:262)
	at org.openmicroscopy.shoola.agents.metadata.browser.BrowserModel.setRootObject(BrowserModel.java:143)
	at org.openmicroscopy.shoola.agents.metadata.browser.BrowserComponent.setRootObject(BrowserComponent.java:146)
	at org.openmicroscopy.shoola.agents.metadata.view.MetadataViewerModel.setRootObject(MetadataViewerModel.java:265)
	at org.openmicroscopy.shoola.agents.metadata.view.MetadataViewerComponent.setRootObject(MetadataViewerComponent.java:380)
	at org.openmicroscopy.shoola.agents.treeviewer.view.TreeViewerComponent.setSelectedNode(TreeViewerComponent.java:1056)
	at org.openmicroscopy.shoola.agents.treeviewer.view.TreeViewerControl.propertyChange(TreeViewerControl.java:946)
	at org.openmicroscopy.shoola.util.ui.component.AbstractComponent.firePropertyChange(AbstractComponent.java:147)
	at org.openmicroscopy.shoola.agents.dataBrowser.view.DataBrowserComponent.setSelectedDisplay(DataBrowserComponent.java:343)
	at org.openmicroscopy.shoola.agents.dataBrowser.view.DataBrowserControl.propertyChange(DataBrowserControl.java:364)
	at org.openmicroscopy.shoola.util.ui.component.AbstractComponent.firePropertyChange(AbstractComponent.java:147)
	at org.openmicroscopy.shoola.agents.dataBrowser.browser.BrowserModel.setSelectedDisplay(BrowserModel.java:767)
	at org.openmicroscopy.shoola.agents.dataBrowser.browser.BrowserControl.handleSelection(BrowserControl.java:258)
	at org.openmicroscopy.shoola.agents.dataBrowser.browser.BrowserControl.onClick(BrowserControl.java:184)
	at org.openmicroscopy.shoola.agents.dataBrowser.browser.BrowserControl.mousePressed(BrowserControl.java:534)
	at java.awt.AWTEventMulticaster.mousePressed(AWTEventMulticaster.java:263)
	at java.awt.Component.processMouseEvent(Component.java:6370)
	at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
	at java.awt.Component.processEvent(Component.java:6138)
	at java.awt.Container.processEvent(Container.java:2085)
	at java.awt.Component.dispatchEventImpl(Component.java:4735)
	at java.awt.Container.dispatchEventImpl(Container.java:2143)
	at java.awt.Component.dispatchEvent(Component.java:4565)
	at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621)
	at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4279)
	at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212)
	at java.awt.Container.dispatchEventImpl(Container.java:2129)
	at java.awt.Window.dispatchEventImpl(Window.java:2478)
	at java.awt.Component.dispatchEvent(Component.java:4565)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:679)
	at java.awt.EventQueue.access$000(EventQueue.java:85)
	at java.awt.EventQueue$1.run(EventQueue.java:638)
	at java.awt.EventQueue$1.run(EventQueue.java:636)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
	at java.awt.EventQueue$2.run(EventQueue.java:652)
	at java.awt.EventQueue$2.run(EventQueue.java:650)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:649)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
Abnormal termination due to an uncaught exception.
java.lang.IllegalArgumentException: No object specified.
	at org.openmicroscopy.shoola.agents.metadata.StructuredDataLoader.<init>(StructuredDataLoader.java:74)
	at org.openmicroscopy.shoola.agents.metadata.view.MetadataViewerModel.fireStructuredDataLoading(MetadataViewerModel.java:395)
	at org.openmicroscopy.shoola.agents.metadata.view.MetadataViewerComponent.loadMetadata(MetadataViewerComponent.java:262)
	at org.openmicroscopy.shoola.agents.metadata.browser.BrowserModel.setRootObject(BrowserModel.java:143)
	at org.openmicroscopy.shoola.agents.metadata.browser.BrowserComponent.setRootObject(BrowserComponent.java:146)
	at org.openmicroscopy.shoola.agents.metadata.view.MetadataViewerModel.setRootObject(MetadataViewerModel.java:265)
	at org.openmicroscopy.shoola.agents.metadata.view.MetadataViewerComponent.setRootObject(MetadataViewerComponent.java:380)
	at org.openmicroscopy.shoola.agents.treeviewer.view.TreeViewerComponent.setSelectedNode(TreeViewerComponent.java:1056)
	at org.openmicroscopy.shoola.agents.treeviewer.view.TreeViewerControl.propertyChange(TreeViewerControl.java:946)
	at org.openmicroscopy.shoola.util.ui.component.AbstractComponent.firePropertyChange(AbstractComponent.java:147)
	at org.openmicroscopy.shoola.agents.dataBrowser.view.DataBrowserComponent.setSelectedDisplay(DataBrowserComponent.java:343)
	at org.openmicroscopy.shoola.agents.dataBrowser.view.DataBrowserControl.propertyChange(DataBrowserControl.java:364)
	at org.openmicroscopy.shoola.util.ui.component.AbstractComponent.firePropertyChange(AbstractComponent.java:147)
	at org.openmicroscopy.shoola.agents.dataBrowser.browser.BrowserModel.setSelectedDisplay(BrowserModel.java:767)
	at org.openmicroscopy.shoola.agents.dataBrowser.browser.BrowserControl.handleSelection(BrowserControl.java:258)
	at org.openmicroscopy.shoola.agents.dataBrowser.browser.BrowserControl.onClick(BrowserControl.java:184)
	at org.openmicroscopy.shoola.agents.dataBrowser.browser.BrowserControl.mousePressed(BrowserControl.java:534)
	at java.awt.AWTEventMulticaster.mousePressed(AWTEventMulticaster.java:263)
	at java.awt.Component.processMouseEvent(Component.java:6370)
	at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
	at java.awt.Component.processEvent(Component.java:6138)
	at java.awt.Container.processEvent(Container.java:2085)
	at java.awt.Component.dispatchEventImpl(Component.java:4735)
	at java.awt.Container.dispatchEventImpl(Container.java:2143)
	at java.awt.Component.dispatchEvent(Component.java:4565)
	at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621)
	at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4279)
	at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212)
	at java.awt.Container.dispatchEventImpl(Container.java:2129)
	at java.awt.Window.dispatchEventImpl(Window.java:2478)
	at java.awt.Component.dispatchEvent(Component.java:4565)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:679)
	at java.awt.EventQueue.access$000(EventQueue.java:85)
	at java.awt.EventQueue$1.run(EventQueue.java:638)
	at java.awt.EventQueue$1.run(EventQueue.java:636)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
	at java.awt.EventQueue$2.run(EventQueue.java:652)
	at java.awt.EventQueue$2.run(EventQueue.java:650)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:649)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
Exception in thread "AWT-EventQueue-0"

	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.showErrorDialog(UserNotifierImpl.java:182)
	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:271)
	at org.openmicroscopy.shoola.env.AbnormalExitHandler.doTermination(AbnormalExitHandler.java:138)
	at org.openmicroscopy.shoola.env.AbnormalExitHandler.terminate(AbnormalExitHandler.java:83)
	at org.openmicroscopy.shoola.env.AWTExceptionHanlder.handle(AWTExceptionHanlder.java:99)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at java.awt.EventDispatchThread.handleException(EventDispatchThread.java:412)
	at java.awt.EventDispatchThread.processException(EventDispatchThread.java:318)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:312)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

comment:6 Changed 12 years ago by jburel

humm what did you click on to get that one?

comment:7 Changed 12 years ago by saloynton

So I think these were the steps:

  • I clicked the 'Browse' option to view the imported plate
  • I then checked the image and expanded the tree structure of the plate
  • Collapsed the navigation tree structure
  • Then re-clicked the 'Browse' option from the importer window

Does that make sense?

comment:8 Changed 12 years ago by jburel

  • Status changed from closed to reopened

comment:9 Changed 12 years ago by jburel

to test:

  • no need to re-import
  • browse the plate
  • double-click on a well.

comment:10 Changed 12 years ago by jburel

  • Status changed from reopened to closed

comment:11 Changed 12 years ago by Jean-marie Burel <j.burel@…>

(In [9a3fc5c7f974f137eac0b6f30c56f21b5f705569/ome.git] on branch develop) Fix NPE when double-clicking on well (see #7733)

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