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Task #7744 (closed)

Opened 12 years ago

Closed 12 years ago

BUG:Import Gel

Reported by: omero-qa Owned by: saloynton
Priority: minor Milestone: OMERO-4.4
Component: from QA Version: n.a.
Keywords: n.a. Cc: jhoughton@…, mlinkert
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2012-01-17 (6)

Description

​http://qa.openmicroscopy.org.uk/qa/feedback/4117/

Comment: photoshop native file of a 2D gel

loci.common.HandleException: Error reading from /Users/john/Desktop/caspase gel-1.psd
	at loci.common.RandomAccessInputStream.readFully(RandomAccessInputStream.java:468)
	at loci.common.RandomAccessInputStream.readFully(RandomAccessInputStream.java:447)
	at loci.common.RandomAccessInputStream.readString(RandomAccessInputStream.java:360)
	at loci.formats.in.PSDReader.initFile(PSDReader.java:281)
	at loci.formats.FormatReader.setId(FormatReader.java:901)
	at loci.formats.ImageReader.setId(ImageReader.java:588)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:179)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448)
	at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182)
	at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:206)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:680)
Caused by: java.io.EOFException
	at java.io.DataInputStream.readFully(DataInputStream.java:180)
	at loci.common.RandomAccessInputStream.readFully(RandomAccessInputStream.java:458)
	... 23 more

Change History (5)

comment:1 Changed 12 years ago by saloynton

  • Cc mlinkert-x added
  • Milestone changed from Unscheduled to OMERO-Beta4.4
  • Remaining Time set to 0.2
  • Sprint set to 2012-01-17 (6)
  • Status changed from new to accepted

comment:2 Changed 12 years ago by saloynton

This problem was fixed in OMERO 4.3.3, I can confirm a successful import in 4.3.3 so upgrading will allow the file to import.

comment:3 Changed 12 years ago by saloynton

  • Owner saloynton deleted
  • Status changed from accepted to new

comment:4 Changed 12 years ago by saloynton

  • Owner set to saloynton
  • Remaining Time changed from 0.2 to 0.1

comment:5 Changed 12 years ago by saloynton

  • Remaining Time changed from 0.1 to 0
  • Resolution set to fixed
  • Status changed from new to closed
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