Task #7768 (closed)
BUG:Uploading script
| Reported by: | omero-qa | Owned by: | jburel |
|---|---|---|---|
| Priority: | minor | Milestone: | OMERO-4.4 |
| Component: | from QA | Version: | n.a. |
| Keywords: | n.a. | Cc: | jmateos@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | 2012-01-17 (6) |
Description
http://qa.openmicroscopy.org.uk/qa/feedback/4123/
Comment: Uploading a script 4.3.1
java.lang.Exception: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
Cannot upload the script: Channel_Registration.py.
at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:887)
at org.openmicroscopy.shoola.env.data.OMEROGateway.uploadScript(OMEROGateway.java:7061)
at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.uploadScript(OmeroImageServiceImpl.java:1526)
at org.openmicroscopy.shoola.env.data.views.calls.ScriptUploader$1.doCall(ScriptUploader.java:71)
at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
at java.lang.Thread.run(Thread.java:636)
Caused by: omero.GroupSecurityViolation
serverStackTrace = "ome.conditions.GroupSecurityViolation: ome.model.core.OriginalFile:Id_101-modification violates group-security.
at ome.security.basic.BasicACLVoter.throwUpdateViolation(BasicACLVoter.java:167)
at ome.security.CompositeACLVoter.throwUpdateViolation(CompositeACLVoter.java:90)
at ome.security.ACLEventListener.onPreUpdate(ACLEventListener.java:129)
at org.hibernate.action.EntityUpdateAction.preUpdate(EntityUpdateAction.java:236)
at org.hibernate.action.EntityUpdateAction.execute(EntityUpdateAction.java:87)
at org.hibernate.engine.ActionQueue.execute(ActionQueue.java:267)
at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:259)
at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:179)
at org.hibernate.event.def.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:321)
at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:51)
at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1208)
at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:294)
at ome.logic.UpdateImpl.doAction(UpdateImpl.java:312)
at ome.logic.UpdateImpl.doAction(UpdateImpl.java:302)
at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:118)
at ome.services.blitz.impl.ScriptI$15.doWork(ScriptI.java:592)
at sun.reflect.GeneratedMethodAccessor249.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:440)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.security.basic.EventHandler.invoke(EventHandler.java:150)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy64.doWork(Unknown Source)
at ome.services.util.Executor$Impl.execute(Executor.java:371)
at ome.services.blitz.impl.ScriptI.updateFile(ScriptI.java:585)
at ome.services.blitz.impl.ScriptI.validateParams(ScriptI.java:721)
at ome.services.blitz.impl.ScriptI.access$200(ScriptI.java:82)
at ome.services.blitz.impl.ScriptI$5.call(ScriptI.java:229)
at ome.services.blitz.impl.ScriptI$5.call(ScriptI.java:210)
at ome.services.throttling.Callback2.run(Callback2.java:49)
at ome.services.throttling.InThreadThrottlingStrategy.safeRunnableCall(InThreadThrottlingStrategy.java:80)
at ome.services.blitz.impl.AbstractAmdServant.safeRunnableCall(AbstractAmdServant.java:155)
at ome.services.blitz.impl.ScriptI.uploadOfficialScript_async(ScriptI.java:210)
at omero.api._IScriptTie.uploadOfficialScript_async(_IScriptTie.java:134)
at omero.api._IScriptDisp.___uploadOfficialScript(_IScriptDisp.java:281)
at omero.api._IScriptDisp.__dispatch(_IScriptDisp.java:538)
at IceInternal.Incoming.invoke(Incoming.java:159)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
at Ice.ConnectionI.message(ConnectionI.java:972)
at IceInternal.ThreadPool.run(ThreadPool.java:577)
at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
"
serverExceptionClass = "ome.conditions.GroupSecurityViolation"
message = "ome.model.core.OriginalFile:Id_101-modification violates group-security."
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:532)
at java.lang.Class.newInstance0(Class.java:372)
at java.lang.Class.newInstance(Class.java:325)
at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
at IceInternal.BasicStream.throwException(BasicStream.java:1632)
at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
at omero.api._IScriptDelM.uploadOfficialScript(_IScriptDelM.java:562)
at omero.api.IScriptPrxHelper.uploadOfficialScript(IScriptPrxHelper.java:730)
at omero.api.IScriptPrxHelper.uploadOfficialScript(IScriptPrxHelper.java:702)
at org.openmicroscopy.shoola.env.data.OMEROGateway.uploadScript(OMEROGateway.java:7057)
... 9 more
at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.showErrorDialog(UserNotifierImpl.java:183)
at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:272)
at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:242)
at org.openmicroscopy.shoola.env.ui.ActivityComponent.showException(ActivityComponent.java:476)
at org.openmicroscopy.shoola.env.ui.ActivityComponent.actionPerformed(ActivityComponent.java:935)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2012)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2335)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:404)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:253)
at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289)
at java.awt.Component.processMouseEvent(Component.java:6136)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
at java.awt.Component.processEvent(Component.java:5901)
at java.awt.Container.processEvent(Container.java:2105)
at java.awt.Component.dispatchEventImpl(Component.java:4497)
at java.awt.Container.dispatchEventImpl(Container.java:2163)
at java.awt.Component.dispatchEvent(Component.java:4323)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4461)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4125)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4055)
at java.awt.Container.dispatchEventImpl(Container.java:2149)
at java.awt.Window.dispatchEventImpl(Window.java:2478)
at java.awt.Component.dispatchEvent(Component.java:4323)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:649)
at java.awt.EventQueue.access$000(EventQueue.java:96)
at java.awt.EventQueue$1.run(EventQueue.java:608)
at java.awt.EventQueue$1.run(EventQueue.java:606)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:116)
at java.awt.EventQueue$2.run(EventQueue.java:622)
at java.awt.EventQueue$2.run(EventQueue.java:620)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:619)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:275)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:200)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:185)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:177)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:138)
Change History (3)
comment:1 Changed 8 years ago by jburel
- Milestone changed from Unscheduled to OMERO-Beta4.4
- Remaining Time set to 0.15
- Sprint set to 2012-01-17 (6)
comment:2 Changed 8 years ago by jburel
- Remaining Time changed from 0.15 to 0
- Resolution set to fixed
- Status changed from new to closed
Problem has been fixed in the new version. We had issue when re-uploading an existing script.
comment:3 Changed 8 years ago by wmoore
I think this is the same issue as #6066?
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You may also have a look at Agilo extensions to the ticket.
I think the problem is fixed, Check during that sprint.