Task #7950 (closed)
Opened 8 years ago
Closed 8 years ago
Bug: ScanR wells not ordered correctly for columns 10 and higher
| Reported by: | mlinkert | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-4.4 |
| Component: | Bio-Formats | Version: | n.a. |
| Keywords: | n.a. | Cc: | ruben.munoz@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | 2012-02-14 (8) |
Description
The alphabetic sorting used in ScanrReader?.java:365 is to blame entirely. Using a custom sorting strategy of alphabetic by first character and numeric by the next 1 or 2 characters (up to "--") should solve the problem.
Problem can be reproduced using the scanr/ruben/20100827_004 plate.
Change History (2)
comment:1 Changed 8 years ago by mlinkert
comment:2 Changed 8 years ago by mlinkert
- Remaining Time changed from 0.5 to 0
- Resolution set to fixed
- Status changed from new to closed
Should be sorted with this commit on my sprint8-bug-fixes branch: https://github.com/melissalinkert/bioformats/commit/e0d985f7412575e48461957bf3453bd46f625d22
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Per Rubén's suggestion, it probably makes more sense to sort based upon the 'well selection table'. So for each file name, look up the well label in the well selection table and sort based upon the corresponding index value.