Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #8215 (new)

Opened 8 years ago

Last modified 4 years ago

Set up some way of mapping plane indices to file names

Reported by: mlinkert Owned by:
Priority: minor Milestone: Unscheduled
Component: Bio-Formats Version: OMERO-5.2.0
Keywords: model, api Cc: briney@…, crueden-x, jamoore
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description (last modified by mlinkert)

It can be useful to know from which file a plane was read. Currently, there is no real way to know this, unless the original dataset was comprised of OME-TIFFs, or there is only one file in the dataset.

Two possible solutions:

  1. Automatically populate TiffData? elements with the correct file names for each plane. This is a slight abuse of the schema, but makes it quite easy to match up planes with files.
  2. Add new API methods "String getUsedFile(int plane)" and "int getUsedFilePlane(int plane)".

Change History (2)

comment:1 Changed 8 years ago by mlinkert

  • Description modified (diff)

comment:2 Changed 4 years ago by mlinkert

  • Cc jamoore added
  • Keywords model api added
  • Owner mlinkert deleted
  • Version set to OMERO-5.2.0

Expanding CC in case this is relevant for IDR etc. A less invasive way to do this would be to add plane numbers to loci.formats.FileInfo?, so no new API is needed in IFormatReader.

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.79836 sec.)

We're Hiring!