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Task #8588 (closed)

Opened 12 years ago

Closed 12 years ago

BUG:Feedback 4286. ZeissCZIReader

Reported by:	omero-qa	Owned by:	mlinkert
Priority:	minor	Milestone:	Unscheduled
Component:	from QA	Version:	n.a.
Keywords:	n.a.	Cc:
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	n.a.

Description

http://qa.openmicroscopy.org.uk/qa/feedback/4286/

Comment from JM:
Problem might have already been fixed. I create a ticket just in case.

java.lang.NullPointerException
	at loci.formats.in.ZeissCZIReader.translateExperiment(ZeissCZIReader.java:1250)
	at loci.formats.in.ZeissCZIReader.translateMetadata(ZeissCZIReader.java:662)
	at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:372)
	at loci.formats.FormatReader.setId(FormatReader.java:1087)
	at loci.formats.ImageReader.setId(ImageReader.java:682)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:492)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:249)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:492)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:257)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:492)
	at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:310)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:486)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6253)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1247)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:86)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:55)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:113)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)

References

Change History (1)

comment:1 Changed 12 years ago by mlinkert

Resolution set to fixed
Status changed from new to closed

This has already been fixed, and is/was an artifact of the Bio-Formats JARs not having been updated within OMERO.

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