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Task #9042 (closed)

Opened 12 years ago

Closed 12 years ago

Last modified 12 years ago

Bug: Error when clicking on image

Reported by: rleigh Owned by: rleigh
Priority: critical Milestone: OMERO-4.4
Component: Web Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: n.a.

Description

Logged in as user-6. In Explorer, expanded Project_B1 for this user in read-annotate-1 and dataset. Clicked on image, got error.

Traceback (most recent call last):

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/core/handlers/base.py", line 111, in get_response

response = callback(request, *callback_args, callback_kwargs)

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/omeroweb/decorators.py", line 321, in wrapped

retval = f(request, *args, kwargs)

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/omeroweb/decorators.py", line 375, in wrapper

return HttpResponse?(t.render(c))

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 123, in render

return self._render(context)

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 117, in _render

return self.nodelist.render(context)

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 744, in render

bits.append(self.render_node(node, context))

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 757, in render_node

return node.render(context)

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/defaulttags.py", line 311, in render

return self.nodelist_true.render(context)

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 744, in render

bits.append(self.render_node(node, context))

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 757, in render_node

return node.render(context)

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/defaulttags.py", line 227, in render

nodelist.append(node.render(context))

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/loader_tags.py", line 159, in render

return self.render_template(self.template, context)

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/loader_tags.py", line 141, in render_template

output = template.render(context)

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 123, in render

return self._render(context)

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 117, in _render

return self.nodelist.render(context)

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 744, in render

bits.append(self.render_node(node, context))

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 757, in render_node

return node.render(context)

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/defaulttags.py", line 306, in render

var = self.var.eval(context)

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/defaulttags.py", line 851, in eval

return self.value.resolve(context, ignore_failures=True)

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 510, in resolve

obj = self.var.resolve(context)

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 653, in resolve

value = self._resolve_lookup(context)

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 698, in _resolve_lookup

current = current()

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/omero/gateway/init.py", line 3696, in getFileName

return self.getFile() and self.getFile().name or None

File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/omero/gateway/init.py", line 1103, in getattr

raise AttributeError?("'%s' object has no attribute '%s'" % (self._obj.class.name, attr))

AttributeError?: 'NoneType?' object has no attribute 'name'

<WSGIRequest
GET:<QueryDict: {}>,
POST:<QueryDict: {}>,
COOKIES:{'sessionid': 'd52947f3a4b9bfb7330002a18689f32a'},
META:{'DOCUMENT_ROOT': '/var/www',

'GATEWAY_INTERFACE': 'CGI/1.1',
'HTTP_ACCEPT': 'text/html, */*; q=0.01',
'HTTP_ACCEPT_ENCODING': 'gzip, deflate',
'HTTP_ACCEPT_LANGUAGE': 'en-us',
'HTTP_CONNECTION': 'keep-alive',
'HTTP_COOKIE': 'sessionid=d52947f3a4b9bfb7330002a18689f32a',
'HTTP_HOST': 'gretzky.openmicroscopy.org.uk',
'HTTP_REFERER': '​http://gretzky.openmicroscopy.org.uk/webclient/',
'HTTP_USER_AGENT': 'Mozilla/5.0 (Macintosh; Intel Mac OS X 10_6_8) AppleWebKit?/534.57.2 (KHTML, like Gecko) Version/5.1.7 Safari/534.57.2',
'HTTP_X_REQUESTED_WITH': 'XMLHttpRequest',
'PATH': '/usr/local/bin:/usr/bin:/bin',
'PATH_INFO': u'/webclient/metadata_details/image/1777/',
'PATH_TRANSLATED': '/home/omero/OMERO-CURRENT/var/omero.fcgi/webclient/metadata_details/image/1777/',
'QUERY_STRING': ,
'REMOTE_ADDR': '10.12.1.40',
'REMOTE_PORT': '59690',
'REQUEST_METHOD': 'GET',
'REQUEST_URI': '/webclient/metadata_details/image/1777/',
'SCRIPT_FILENAME': '/home/omero/OMERO-CURRENT/var/omero.fcgi',
'SCRIPT_NAME': u,
'SERVER_ADDR': '134.36.65.227',
'SERVER_ADMIN': 'webmaster@localhost',
'SERVER_NAME': 'gretzky.openmicroscopy.org.uk',
'SERVER_PORT': '80',
'SERVER_PROTOCOL': 'HTTP/1.1',
'SERVER_SIGNATURE': '<address>Apache/2.2.14 (Ubuntu) Server at gretzky.openmicroscopy.org.uk Port 80</address>\n',
'SERVER_SOFTWARE': 'Apache/2.2.14 (Ubuntu)',
'wsgi.errors': <flup.server.fcgi_base.TeeOutputStream? object at 0x4880dd0>,
'wsgi.input': <flup.server.fcgi_base.InputStream? object at 0x4880b10>,
'wsgi.multiprocess': True,
'wsgi.multithread': False,
'wsgi.run_once': False,
'wsgi.url_scheme': 'http',
'wsgi.version': (1, 0)}>

Change History (9)

comment:1 Changed 12 years ago by wmoore

  • Owner changed from web-team@… to wmoore

Need to check why FileWrapper?._obj is None. Name is not set by script, but this shouldn't cause file to be None.

comment:2 Changed 12 years ago by wmoore

  • Resolution set to fixed
  • Status changed from new to closed

Should be fixed with ​https://github.com/will-moore/openmicroscopy/commit/f6923b1a3f0b8129d9b30aec5eb38276be038c53

comment:3 Changed 12 years ago by wmoore

  • Resolution fixed deleted
  • Status changed from closed to reopened

This has improved the line that caused the crash above, but since I couldn't reproduce the error above before I made these changes, I cannot be sure this fixed the bug.

Roger, maybe we can check this works with the image in question?

comment:4 Changed 12 years ago by saloynton

  • Milestone changed from Unscheduled to OMERO-Beta4.4
  • Owner changed from wmoore to rleigh
  • Status changed from reopened to accepted

comment:5 Changed 12 years ago by rleigh

I get an exception for all images in the ProjectB_1 dataset, below. In insight, the attachments have the name "-1".

Traceback (most recent call last):

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/core/handlers/base.py", line 111, in get_response
    response = callback(request, *callback_args, **callback_kwargs)

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/omeroweb/decorators.py", line 321, in wrapped
    retval = f(request, *args, **kwargs)

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/omeroweb/decorators.py", line 375, in wrapper
    return HttpResponse(t.render(c))

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 123, in render
    return self._render(context)

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 117, in _render
    return self.nodelist.render(context)

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 744, in render
    bits.append(self.render_node(node, context))

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 757, in render_node
    return node.render(context)

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/defaulttags.py", line 311, in render
    return self.nodelist_true.render(context)

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 744, in render
    bits.append(self.render_node(node, context))

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 757, in render_node
    return node.render(context)

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/defaulttags.py", line 227, in render
    nodelist.append(node.render(context))

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/loader_tags.py", line 159, in render
    return self.render_template(self.template, context)

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/loader_tags.py", line 141, in render_template
    output = template.render(context)

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 123, in render
    return self._render(context)

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 117, in _render
    return self.nodelist.render(context)

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 744, in render
    bits.append(self.render_node(node, context))

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 757, in render_node
    return node.render(context)

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/defaulttags.py", line 306, in render
    var = self.var.eval(context)

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/defaulttags.py", line 851, in eval
    return self.value.resolve(context, ignore_failures=True)

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 510, in resolve
    obj = self.var.resolve(context)

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 653, in resolve
    value = self._resolve_lookup(context)

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/django/template/base.py", line 698, in _resolve_lookup
    current = current()

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/omero/gateway/__init__.py", line 3707, in getFileName
    fpath = f.getPath()

  File "/home/omero/slave/workspace/OMERO-merge-green/src/dist/lib/python/omero/gateway/__init__.py", line 1103, in __getattr__
    raise AttributeError("'%s' object has no attribute '%s'" % (self._obj.__class__.__name__, attr))

AttributeError: 'NoneType' object has no attribute 'getPath'


<WSGIRequest
GET:<QueryDict: {}>,
POST:<QueryDict: {}>,
COOKIES:{'sessionid': 'add285e7a7cb9ba04a033fec8017b0a4'},
META:{'DOCUMENT_ROOT': '/var/www',
 'GATEWAY_INTERFACE': 'CGI/1.1',
 'HTTP_ACCEPT': 'text/html, */*; q=0.01',
 'HTTP_ACCEPT_ENCODING': 'gzip, deflate',
 'HTTP_ACCEPT_LANGUAGE': 'en-gb,en;q=0.5',
 'HTTP_CONNECTION': 'keep-alive',
 'HTTP_COOKIE': 'sessionid=add285e7a7cb9ba04a033fec8017b0a4',
 'HTTP_HOST': 'gretzky.openmicroscopy.org.uk',
 'HTTP_REFERER': 'http://gretzky.openmicroscopy.org.uk/webclient/userdata/?experimenter=7',
 'HTTP_USER_AGENT': 'Mozilla/5.0 (Macintosh; Intel Mac OS X 10.6; rv:12.0) Gecko/20100101 Firefox/12.0',
 'HTTP_X_REQUESTED_WITH': 'XMLHttpRequest',
 'PATH': '/usr/local/bin:/usr/bin:/bin',
 'PATH_INFO': u'/webclient/metadata_details/image/213/',
 'PATH_TRANSLATED': '/home/omero/OMERO-CURRENT/var/omero.fcgi/webclient/metadata_details/image/213/',
 'QUERY_STRING': '',
 'REMOTE_ADDR': '10.12.1.40',
 'REMOTE_PORT': '49676',
 'REQUEST_METHOD': 'GET',
 'REQUEST_URI': '/webclient/metadata_details/image/213/',
 'SCRIPT_FILENAME': '/home/omero/OMERO-CURRENT/var/omero.fcgi',
 'SCRIPT_NAME': u'',
 'SERVER_ADDR': '134.36.65.227',
 'SERVER_ADMIN': 'webmaster@localhost',
 'SERVER_NAME': 'gretzky.openmicroscopy.org.uk',
 'SERVER_PORT': '80',
 'SERVER_PROTOCOL': 'HTTP/1.1',
 'SERVER_SIGNATURE': '<address>Apache/2.2.14 (Ubuntu) Server at gretzky.openmicroscopy.org.uk Port 80</address>\n',
 'SERVER_SOFTWARE': 'Apache/2.2.14 (Ubuntu)',
 'wsgi.errors': <flup.server.fcgi_base.TeeOutputStream object at 0x4cdb590>,
 'wsgi.input': <flup.server.fcgi_base.InputStream object at 0x4cdba90>,
 'wsgi.multiprocess': True,
 'wsgi.multithread': False,
 'wsgi.run_once': False,
 'wsgi.url_scheme': 'http',
 'wsgi.version': (1, 0)}>

comment:6 Changed 12 years ago by Will Moore <will@…>

  • Remaining Time set to 0
  • Resolution set to fixed
  • Status changed from accepted to closed

(In [f6923b1a3f0b8129d9b30aec5eb38276be038c53/ome.git] on branch develop) Fix display of file name (or path). Closes #9042

comment:7 Changed 12 years ago by rleigh

To reproduce: select any image in user-6 read-annotate-1, ProjectB_1

comment:9 Changed 12 years ago by rleigh

It's unfortunately not possible to test this fix due to reloading the database--the broken attachments are no longer present, and Insight has been fixed to no longer create them broken.

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