Task #9066 (closed)
Bug: Import li-flim
Reported by: | jburel | Owned by: | mlinkert |
---|---|---|---|
Priority: | critical | Milestone: | OMERO-4.4 |
Component: | Bio-Formats | Version: | n.a. |
Keywords: | n.a. | Cc: | ux@… |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | n.a. |
Description
The following file li-flim/jean-marie/Flimdata/D Reference fluorescein4ns-CFPbpFILTER-multifreq.fli failed to import
Error below
java.io.EOFException: Unexpected end of ZLIB input stream at java.util.zip.InflaterInputStream.fill(InflaterInputStream.java:216) at java.util.zip.InflaterInputStream.read(InflaterInputStream.java:134) at java.util.zip.GZIPInputStream.read(GZIPInputStream.java:87) at java.io.DataInputStream.readFully(DataInputStream.java:176) at java.io.DataInputStream.readFully(DataInputStream.java:152) at loci.formats.in.LiFlimReader.openBytes(LiFlimReader.java:173) at loci.formats.ImageReader.openBytes(ImageReader.java:401) at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:184) at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:213) at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:304) at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:260) at ome.formats.importer.ImportLibrary.writeDataTileBased(ImportLibrary.java:872) at ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:797) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:573) at
Change History (4)
comment:1 Changed 12 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
comment:2 Changed 12 years ago by jburel
- Resolution fixed deleted
- Status changed from closed to reopened
Imported with this morning build. same error.
comment:3 Changed 12 years ago by mlinkert
- Resolution set to fixed
- Status changed from reopened to closed
That's because the submodule pointer wasn't updated, so the fixes never made it into the build. The submodule will be updated before tomorrow's build.
comment:4 Changed 12 years ago by jburel
Retested and imported correctly.
Note: See
TracTickets for help on using
tickets.
You may also have a look at Agilo extensions to the ticket.
Fixed with this commit: https://github.com/melissalinkert/bioformats/commit/dbbef64c91444a817ee25c6a6f4be24f6e7ef814