Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #9080 (closed)

Opened 12 years ago

Closed 12 years ago

BUG:Import Channel processor

Reported by: omero-qa Owned by: cxallan
Priority: major Milestone: OMERO-4.4
Component: Import Version: n.a.
Keywords: n.a. Cc: r.leigh@…, mlinkert
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: 2012-06-19 (17)

Description

http://qa.openmicroscopy.org.uk/qa/feedback/4446/

Unable to locate Pixels:1
	at ome.formats.model.ChannelProcessor.process(ChannelProcessor.java:444)
	at ome.formats.OMEROMetadataStoreClient.postProcess(OMEROMetadataStoreClient.java:2098)
	at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:349)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:537)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6252)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:200)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1395)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:86)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:55)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:113)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)

Change History (2)

comment:1 Changed 12 years ago by jburel

  • Cc mlinkert-x added
  • Component changed from from QA to Import
  • Milestone changed from Unscheduled to OMERO-Beta4.4
  • Priority changed from minor to major
  • Sprint set to 2012-06-19 (17)

comment:2 Changed 12 years ago by cxallan

  • Resolution set to invalid
  • Status changed from new to closed

What this exception is telling us is that the populated data model has an Image:1 object but no Pixels:1 object. Without knowing the file, the context and at a minimum having the omeroinsight.log it's really impossible to address this. Closing as invalid. When and if we have more information and a reproducible error we can re-open this.

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.64525 sec.)

We're Hiring!