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Task #9100 (closed)

Opened 12 years ago

Closed 12 years ago

Bug: Import failed (imacom/ss1.fff)

Reported by: bpindelski Owned by: mlinkert
Priority: major Milestone: OMERO-4.4
Component: Bio-Formats Version: n.a.
Keywords: n.a. Cc: bpindelski
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: 2012-06-19 (17)

Description

Import failed with Imacom image (ss1.fff)

java.io.IOException: The parameter is incorrect
	at sun.nio.ch.FileDispatcherImpl.read0(Native Method)
	at sun.nio.ch.FileDispatcherImpl.read(Unknown Source)
	at sun.nio.ch.IOUtil.readIntoNativeBuffer(Unknown Source)
	at sun.nio.ch.IOUtil.read(Unknown Source)
	at sun.nio.ch.FileChannelImpl.read(Unknown Source)
	at loci.common.NIOFileHandle.read(NIOFileHandle.java:229)
	at loci.common.NIOFileHandle.read(NIOFileHandle.java:221)
	at loci.common.NIOFileHandle.read(NIOFileHandle.java:211)
	at loci.common.NIOFileHandle.readFully(NIOFileHandle.java:303)
	at loci.common.RandomAccessInputStream.readFully(RandomAccessInputStream.java:433)
	at loci.formats.tiff.TiffParser.getIFDValue(TiffParser.java:453)
	at loci.formats.tiff.TiffParser.fillInIFD(TiffParser.java:428)
	at loci.formats.in.MinimalTiffReader.initFile(MinimalTiffReader.java:408)
	at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:505)
	at loci.formats.FormatReader.setId(FormatReader.java:1092)
	at loci.formats.ImageReader.setId(ImageReader.java:682)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:492)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:250)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:492)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:261)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:492)
	at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:310)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:486)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6253)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1247)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:86)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:55)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:113)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Unknown Source)

	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6301)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1247)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:86)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:55)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:113)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Unknown Source)
Caused by: java.io.IOException: The parameter is incorrect
	at sun.nio.ch.FileDispatcherImpl.read0(Native Method)
	at sun.nio.ch.FileDispatcherImpl.read(Unknown Source)
	at sun.nio.ch.IOUtil.readIntoNativeBuffer(Unknown Source)
	at sun.nio.ch.IOUtil.read(Unknown Source)
	at sun.nio.ch.FileChannelImpl.read(Unknown Source)
	at loci.common.NIOFileHandle.read(NIOFileHandle.java:229)
	at loci.common.NIOFileHandle.read(NIOFileHandle.java:221)
	at loci.common.NIOFileHandle.read(NIOFileHandle.java:211)
	at loci.common.NIOFileHandle.readFully(NIOFileHandle.java:303)
	at loci.common.RandomAccessInputStream.readFully(RandomAccessInputStream.java:433)
	at loci.formats.tiff.TiffParser.getIFDValue(TiffParser.java:453)
	at loci.formats.tiff.TiffParser.fillInIFD(TiffParser.java:428)
	at loci.formats.in.MinimalTiffReader.initFile(MinimalTiffReader.java:408)
	at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:505)
	at loci.formats.FormatReader.setId(FormatReader.java:1092)
	at loci.formats.ImageReader.setId(ImageReader.java:682)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:492)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:250)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:492)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:261)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:492)
	at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:310)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:486)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6253)
	... 11 more

Change History (1)

comment:1 Changed 12 years ago by mlinkert

  • Resolution set to duplicate
  • Status changed from new to closed

Duplicate of #9101.

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