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Task #9159 (closed)

Opened 10 years ago

Closed 10 years ago

BUG:Failures generated by link to dataset

Reported by: ajpatterson Owned by: jburel
Priority: blocker Milestone: OMERO-4.4
Component: Insight Version: n.a.
Keywords: n.a. Cc: ux@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: 2012-06-19 (17)

Description (last modified by ajpatterson)

Import used "Olympus SIS TIFF" folder

http://qa.openmicroscopy.org.uk/qa/feedback/4458/
http://qa.openmicroscopy.org.uk/qa/feedback/4459/
http://qa.openmicroscopy.org.uk/qa/feedback/4460/
http://qa.openmicroscopy.org.uk/qa/feedback/4461/

Comment: Failures only created if I click on link to dataset on first file while othere ase importing. Three different exceptions in the failures.

java.lang.NullPointerException
	at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2142)
	at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:355)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:537)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6253)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:200)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1395)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:86)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:55)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:112)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Unknown Source)

[BR]

omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: This RawPixelsStore has not been properly initialized.
                        Please set the pixels id before executing any other methods.
                        
                        	at ome.services.RawPixelsBean.errorIfNotLoaded(RawPixelsBean.java:318)
                        	at ome.services.RawPixelsBean.setTile(RawPixelsBean.java:779)
                        	at sun.reflect.GeneratedMethodAccessor634.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)

[BR]

java.lang.IllegalStateException: ome.formats.OMEROMetadataStoreClient.getImageFormat: Current file should not be null; call setId(String) first
	at loci.formats.FormatTools.assertId(FormatTools.java:700)
	at loci.formats.ImageReader.getReader(ImageReader.java:187)
	at ome.formats.OMEROMetadataStoreClient.getImageFormat(OMEROMetadataStoreClient.java:1127)
	at ome.formats.OMEROMetadataStoreClient.getImage(OMEROMetadataStoreClient.java:4396)
	at ome.formats.OMEROMetadataStoreClient.setImageAcquisitionDate(OMEROMetadataStoreClient.java:4423)

[BR]

java.lang.IllegalStateException: ome.formats.OMEROMetadataStoreClient.getImageFormat: Current file should not be null; call setId(String) first
	at loci.formats.FormatTools.assertId(FormatTools.java:700)
	at loci.formats.ImageReader.getReader(ImageReader.java:187)
	at ome.formats.OMEROMetadataStoreClient.getImageFormat(OMEROMetadataStoreClient.java:1127)
	at ome.formats.OMEROMetadataStoreClient.getImage(OMEROMetadataStoreClient.java:4396)
	at ome.formats.OMEROMetadataStoreClient.setImageAcquisitionDate(OMEROMetadataStoreClient.java:4423)

Change History (4)

comment:1 Changed 10 years ago by ajpatterson

  • Cc ajpatterson@… removed
  • Component changed from from QA to Insight
  • Description modified (diff)
  • Milestone changed from Unscheduled to OMERO-Beta4.4
  • Priority changed from minor to major
  • Reporter changed from omero-qa to ajpatterson

comment:2 Changed 10 years ago by ajpatterson

  • Description modified (diff)

comment:3 Changed 10 years ago by ajpatterson

Related to #9158 as works if dataset link not clicked during import.

comment:4 Changed 10 years ago by jburel

  • Cc ux@… added
  • Priority changed from major to blocker
  • Resolution set to fixed
  • Sprint set to 2012-06-19 (17)
  • Status changed from new to closed

This commit ef0e45286a836d63c323e2484bb79f7a2a9cb3f5 should fix the problem.

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