Task #9209 (closed)
Bug: Import of trestle images takes far too long
Reported by: | rleigh | Owned by: | |
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Priority: | major | Milestone: | OMERO-4.4 |
Component: | Import | Version: | n.a. |
Keywords: | n.a. | Cc: | mlinkert |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | n.a. |
Description
File: All trestle images, but CMU-3.tif in particular took over 18 hours without completing. All take at least 40 minutes "analyzing" before even starting to import.
This does not appear to be a direct issue with bioformats: showinf displays all but series 0 (>2GiB) within a few seconds, and the metadata parsing is nearly instantaneous. It's not clear what is causing the problem here, but it's certainly not thrashing the disc.
Roger
Change History (2)
comment:1 Changed 12 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
comment:2 Changed 12 years ago by rleigh
Import is now very fast, but imported images are corrupted. New bug opened for this (#9233)
Basically this is caused by not having the Trestle reader on the fs.lite readers list, which means that all of the tile processing happens client-side instead of server-side.
Should be fixed with this commit: https://github.com/aleksandra-tarkowska/openmicroscopy/commit/cdffc2cf73fd37ecb50aa1110b02a047243d1f9b