ImageJ rotation.ijm via Python

[wmoore]

Experimental integration of an ImageJ macro (from Asmi Shah @ KIT) with OMERO via Python / Web.

rotation.ijm

str=getArgument();
args=split(str,"*");
ippath=args[0];
slices=args[1];
opname=args[2];
oppath=args[3];

run("Image Sequence...", "open=&ippath number=&slices starting=1 increment=1 scale=100 file=[] or=[] sort");
run("3D Project...", "projection=[Brightest Point] axis=Y-Axis slice=1 initial=0 total=360 rotation=10 lower=1 upper=255 opacity=0 surface=100 interior=50");
run("Image Sequence... ", "format=JPEG name=[&opname] start=0 digits=4 save="+oppath );

Asmi has code to call this via Python and create a web page that shows a slider for moving between the rotation frames.

[wmoore]

1st Demo of rotation projection in web