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Task #9419 (closed)

Opened 12 years ago

Closed 12 years ago

BUG: Current file should not be null; call setId

Reported by: omero-qa Owned by: jburel
Priority: critical Milestone: OMERO-4.4.4
Component: Insight Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: https://trac.openmicroscopy.org.uk/ome/ticket/1335 Remaining Time: n.a.
Sprint: 2012-09-11 (4)

Description

​http://qa.openmicroscopy.org.uk/qa/feedback/4565/

Comment: something wrong there

java.lang.IllegalStateException: ome.formats.OMEROMetadataStoreClient.getImageFormat: Current file should not be null; call setId(String) first
	at loci.formats.FormatTools.assertId(FormatTools.java:713)
	at loci.formats.ImageReader.getReader(ImageReader.java:200)
	at ome.formats.OMEROMetadataStoreClient.getImageFormat(OMEROMetadataStoreClient.java:1127)
	at ome.formats.OMEROMetadataStoreClient.getImage(OMEROMetadataStoreClient.java:4396)
	at ome.formats.OMEROMetadataStoreClient.setImageAcquisitionDate(OMEROMetadataStoreClient.java:4423)
	at loci.formats.meta.FilterMetadata.setImageAcquisitionDate(FilterMetadata.java:1219)
	at loci.formats.MetadataTools.setDefaultCreationDate(MetadataTools.java:397)
	at loci.formats.MetadataTools.populateMetadata(MetadataTools.java:227)
	at loci.formats.MetadataTools.populatePixels(MetadataTools.java:137)
	at loci.formats.MetadataTools.populatePixels(MetadataTools.java:112)
	at loci.formats.in.DeltavisionReader.initPixels(DeltavisionReader.java:503)
	at loci.formats.in.DeltavisionReader.initFile(DeltavisionReader.java:257)
	at loci.formats.FormatReader.setId(FormatReader.java:1105)
	at loci.formats.ImageReader.setId(ImageReader.java:695)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:505)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:263)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:505)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:274)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:505)
	at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:310)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:486)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6335)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1248)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)

Change History (10)

comment:1 Changed 12 years ago by sylittlewood

  • Milestone changed from Unscheduled to OMERO-4.4.2

comment:2 Changed 12 years ago by sylittlewood

  • References set to 1335

comment:3 Changed 12 years ago by sylittlewood

  • References changed from 1335 to https://trac.openmicroscopy.org.uk/ome/ticket/1335

comment:4 Changed 12 years ago by sylittlewood

Related to an old case (​https://trac.openmicroscopy.org.uk/ome/ticket/1335)

Any idea why this would still be happening Melissa?

comment:5 Changed 12 years ago by mlinkert

  • Owner changed from mlinkert-x to jburel

Re-assigning to Jean-Marie as discussed in devteam.

See also:

​http://qa.openmicroscopy.org.uk/qa/feedback/4567/
​http://qa.openmicroscopy.org.uk/qa/feedback/4568/

comment:6 Changed 12 years ago by saloynton

  • Cc S.C.Moser@… removed

Sandra asked to be taken off ticket because of being emailed of the changes.

comment:7 Changed 12 years ago by saloynton

Occurred again in QA 4568 and 4567 the OMERO log file has been attached in these

comment:8 Changed 12 years ago by jburel

  • Component changed from from QA to Insight
  • Priority changed from minor to critical
  • Sprint set to 2012-09-11 (4)

comment:9 Changed 12 years ago by jburel

  • Status changed from new to accepted

comment:10 Changed 12 years ago by jburel

  • Resolution set to fixed
  • Status changed from accepted to closed

I wrongly assume that the services were kept alive by default.
This work is part of the "manage connection".
See ​https://github.com/openmicroscopy/openmicroscopy/pull/344

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