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Task #9430 (closed)

Opened 7 years ago

Closed 7 years ago

Last modified 7 years ago

BUG: Dataset to Plate

Reported by: omero-qa Owned by: jburel
Priority: minor Milestone: OMERO-4.4.7
Component: from QA Version: n.a.
Keywords: n.a. Cc: harri.jaalinoja@…, ux@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2012-11-20 (2)

Description

​http://qa.openmicroscopy.org.uk/qa/feedback/4571/

Comment: Clicking on an image in a screen I just created by "Dataset to Plate" script. The plate came out ordered differently than I intended, I'll try again...
Cheers,
Harri

java.lang.Exception: Abnormal termination due to an uncaught exception.
java.lang.IllegalArgumentException: Row index out of range
	at javax.swing.JTable.boundRow(JTable.java:2129)
	at javax.swing.JTable.setRowSelectionInterval(JTable.java:2152)
	at org.openmicroscopy.shoola.util.ui.PlateGrid.selectCell(PlateGrid.java:204)
	at org.openmicroscopy.shoola.agents.dataBrowser.view.PlateGridUI.onSelectedWell(PlateGridUI.java:130)
	at org.openmicroscopy.shoola.agents.dataBrowser.view.DataBrowserUI.onSelectedWell(DataBrowserUI.java:642)
	at org.openmicroscopy.shoola.agents.dataBrowser.view.DataBrowserComponent.setSelectedDisplay(DataBrowserComponent.java:357)
	at org.openmicroscopy.shoola.agents.dataBrowser.view.DataBrowserControl.propertyChange(DataBrowserControl.java:464)
	at org.openmicroscopy.shoola.util.ui.component.AbstractComponent.firePropertyChange(AbstractComponent.java:147)
	at org.openmicroscopy.shoola.agents.dataBrowser.browser.BrowserModel.setSelectedDisplay(BrowserModel.java:776)
	at org.openmicroscopy.shoola.agents.dataBrowser.browser.BrowserControl.handleSelection(BrowserControl.java:258)
	at org.openmicroscopy.shoola.agents.dataBrowser.browser.BrowserControl.onClick(BrowserControl.java:184)
	at org.openmicroscopy.shoola.agents.dataBrowser.browser.BrowserControl.mousePressed(BrowserControl.java:534)
	at java.awt.AWTEventMulticaster.mousePressed(AWTEventMulticaster.java:280)
	at java.awt.Component.processMouseEvent(Component.java:6265)
	at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
	at java.awt.Component.processEvent(Component.java:6033)
	at java.awt.Container.processEvent(Container.java:2045)
	at java.awt.Component.dispatchEventImpl(Component.java:4629)
	at java.awt.Container.dispatchEventImpl(Container.java:2103)
	at java.awt.Component.dispatchEvent(Component.java:4455)
	at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4633)
	at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4294)
	at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4227)
	at java.awt.Container.dispatchEventImpl(Container.java:2089)
	at java.awt.Window.dispatchEventImpl(Window.java:2517)
	at java.awt.Component.dispatchEvent(Component.java:4455)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:649)
	at java.awt.EventQueue.access$000(EventQueue.java:96)
	at java.awt.EventQueue$1.run(EventQueue.java:608)
	at java.awt.EventQueue$1.run(EventQueue.java:606)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:116)
	at java.awt.EventQueue$2.run(EventQueue.java:622)
	at java.awt.EventQueue$2.run(EventQueue.java:620)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:619)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:275)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:200)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:185)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:177)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:138)
Abnormal termination due to an uncaught exception.
java.lang.IllegalArgumentException: Row index out of range
	at javax.swing.JTable.boundRow(JTable.java:2129)
	at javax.swing.JTable.setRowSelectionInterval(JTable.java:2152)
	at org.openmicroscopy.shoola.util.ui.PlateGrid.selectCell(PlateGrid.java:204)
	at org.openmicroscopy.shoola.agents.dataBrowser.view.PlateGridUI.onSelectedWell(PlateGridUI.java:130)
	at org.openmicroscopy.shoola.agents.dataBrowser.view.DataBrowserUI.onSelectedWell(DataBrowserUI.java:642)
	at org.openmicroscopy.shoola.agents.dataBrowser.view.DataBrowserComponent.setSelectedDisplay(DataBrowserComponent.java:357)
	at org.openmicroscopy.shoola.agents.dataBrowser.view.DataBrowserControl.propertyChange(DataBrowserControl.java:464)
	at org.openmicroscopy.shoola.util.ui.component.AbstractComponent.firePropertyChange(AbstractComponent.java:147)
	at org.openmicroscopy.shoola.agents.dataBrowser.browser.BrowserModel.setSelectedDisplay(BrowserModel.java:776)
	at org.openmicroscopy.shoola.agents.dataBrowser.browser.BrowserControl.handleSelection(BrowserControl.java:258)
	at org.openmicroscopy.shoola.agents.dataBrowser.browser.BrowserControl.onClick(BrowserControl.java:184)
	at org.openmicroscopy.shoola.agents.dataBrowser.browser.BrowserControl.mousePressed(BrowserControl.java:534)
	at java.awt.AWTEventMulticaster.mousePressed(AWTEventMulticaster.java:280)
	at java.awt.Component.processMouseEvent(Component.java:6265)
	at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
	at java.awt.Component.processEvent(Component.java:6033)
	at java.awt.Container.processEvent(Container.java:2045)
	at java.awt.Component.dispatchEventImpl(Component.java:4629)
	at java.awt.Container.dispatchEventImpl(Container.java:2103)
	at java.awt.Component.dispatchEvent(Component.java:4455)
	at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4633)
	at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4294)
	at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4227)
	at java.awt.Container.dispatchEventImpl(Container.java:2089)
	at java.awt.Window.dispatchEventImpl(Window.java:2517)
	at java.awt.Component.dispatchEvent(Component.java:4455)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:649)
	at java.awt.EventQueue.access$000(EventQueue.java:96)
	at java.awt.EventQueue$1.run(EventQueue.java:608)
	at java.awt.EventQueue$1.run(EventQueue.java:606)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:116)
	at java.awt.EventQueue$2.run(EventQueue.java:622)
	at java.awt.EventQueue$2.run(EventQueue.java:620)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:619)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:275)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:200)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:185)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:177)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:138)
Exception in thread "AWT-EventQueue-0"

	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.showErrorDialog(UserNotifierImpl.java:189)
	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:287)
	at org.openmicroscopy.shoola.env.AbnormalExitHandler.doTermination(AbnormalExitHandler.java:146)
	at org.openmicroscopy.shoola.env.AbnormalExitHandler.terminate(AbnormalExitHandler.java:84)
	at org.openmicroscopy.shoola.env.AWTExceptionHanlder.handle(AWTExceptionHanlder.java:99)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:616)
	at java.awt.EventDispatchThread.handleException(EventDispatchThread.java:392)
	at java.awt.EventDispatchThread.processException(EventDispatchThread.java:298)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:288)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:200)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:185)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:177)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:138)

Change History (6)

comment:1 Changed 7 years ago by jburel

  • Cc ux@… added
  • Milestone changed from Unscheduled to OMERO-4.5
  • Remaining Time set to 0.1
  • Sprint set to 2012-11-20 (2)

comment:2 Changed 7 years ago by jburel

  • Status changed from new to accepted

comment:3 Changed 7 years ago by jburel

  • Remaining Time changed from 0.1 to 0
  • Resolution set to fixed
  • Status changed from accepted to closed

see ​https://github.com/openmicroscopy/openmicroscopy/pull/431

comment:4 Changed 7 years ago by pwalczysko

Logged in as user-3 at Howe. Tried 2 datasets. Run the script twice on them. The resulting plate corresponds with the parameters set in the script window. No errors.
Ready to merge.

comment:5 Changed 7 years ago by pwalczysko

Wanted to say: this bug is fixed. Ready to merge probably not yet, as there are other bugs in the testing task which did not pass (9703 for example).

comment:6 Changed 7 years ago by jburel <j.burel@…>

(In [4618639d8cf878103807ae3728bbd1c3ce9d41db/ome.git] on branch develop) Check row/column are not > han the size of table (See #9430)

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