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Task #9559 (closed)

Opened 7 years ago

Closed 7 years ago

Last modified 7 years ago

Bug: ROI support model

Reported by: jburel Owned by: jburel
Priority: major Milestone: OMERO-4.4.4
Component: Insight Version: n.a.
Keywords: n.a. Cc: cxallan, wmoore
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2012-09-11 (4)

Description (last modified by jburel)

If the shape does not have a Z or a T specified, the shape should be displayed on all z-section/timepoints.

  • Add support for polyline and polygon following the specification.

Attachments (4)

ROI_Result.png (103.5 KB) - added by jburel 7 years ago.
sample.ome (5.9 KB) - added by jburel 7 years ago.
Screen shot 2012-09-05 at 17.15.36.png (264.7 KB) - added by wmoore 7 years ago.
Before changes in web
Screen shot 2012-09-05 at 17.14.52.png (261.7 KB) - added by wmoore 7 years ago.
After changes: See ROI text and Icons

Download all attachments as: .zip

Change History (20)

comment:1 Changed 7 years ago by jburel

  • Remaining Time set to 0.4
  • Status changed from new to accepted

comment:2 Changed 7 years ago by jburel

  • Description modified (diff)
  • Remaining Time changed from 0.4 to 0.8

comment:3 Changed 7 years ago by jburel

  • leave the field displaying z (resp. t) blank when the value is null. Same for ROI or Shape
  • if Shape has z (resp. t) not null, indicate the value (as it is now). ROI display 'range' i.e. min-max if min and max are not the same (only the case for multiple shapes)
  • Type field: if Shape of the same type (e.g. line), the ROI will display the shape type. If shape of different types, the ROI will not display a shape's type. Same for text.
Last edited 7 years ago by jburel (previous) (diff)

Changed 7 years ago by jburel

comment:4 Changed 7 years ago by jburel

  • Summary changed from Bug: ROI w/o z or t to Bug: ROI support model

Follow the list done while working on that ticket.

  • Fix display of z, t, type in inspector
  • Add support for polyline and polygon following the specification.
  • Prepare code to display shape w/o z or t.
  • Fix the saving of shape so that null z or null t are not replaced by a default value.

I had to turn off the display of shapes w/o z or t since the measurement tool currently does not support multiple shapes per roi. This is out of the scope of that ticket.

I attach a sample file with Shape

Changed 7 years ago by jburel

comment:5 Changed 7 years ago by jburel

  • Remaining Time changed from 0.8 to 0
  • Resolution set to fixed
  • Status changed from accepted to closed

Changed 7 years ago by wmoore

Before changes in web

Changed 7 years ago by wmoore

After changes: See ROI text and Icons

comment:6 Changed 7 years ago by wmoore

comment:7 Changed 7 years ago by jburel <j.burel@…>

(In [4683965fbab86ca010652b8d4f93f23f83d7b2c6/ome.git] on branch develop) Support polyline following specification for points (see #9559)

Add support for both i.e. points[10,10] and 10,10
add tests

comment:8 Changed 7 years ago by jburel <j.burel@…>

(In [bafb7d12cbe0e288b3c93ac16c29d3dd73444033/ome.git] on branch develop) Do not insert negative z or t if null (see #9559)

comment:9 Changed 7 years ago by jburel <j.burel@…>

(In [c9eb7dda7c0215deaa8bbb5a1792be1fcf28cd7d/ome.git] on branch develop) Add shape w/o z and t to the drawing. (see #9559)

comment:10 Changed 7 years ago by jburel <j.burel@…>

(In [74f84d9b28aa2455b9f6c1f686ecadc891b66879/ome.git] on branch develop) Fix ROI/Shape display following discussion (see #9559)

comment:11 Changed 7 years ago by jburel <j.burel@…>

(In [4464c6bbf647b825e6d04667aa00322ebecf8794/ome.git] on branch develop) Do not select a new plane when z or t < 0 (see #9559)

comment:12 Changed 7 years ago by jburel <j.burel@…>

(In [914e49a9509f6bf54235c226628783ee2dbca4c6/ome.git] on branch develop) Save bug introduced while saving the z/t of the shape. (see #9559)

comment:13 Changed 7 years ago by jburel <j.burel@…>

(In [08fffd711e6ad7dc245c32d85732869234f77059/ome.git] on branch develop) Do not display shape w/o z or t. (see #9559)

comment:14 Changed 7 years ago by Will Moore <will@…>

(In [009d5b6c31938ab03c37f552d9a9de507c937134/ome.git] on branch develop) Remove 'All' text and don't set Z/T pos if no Z/T on clicked shape. See #9559

comment:15 Changed 7 years ago by Will Moore <will@…>

(In [0ed5d25e99a3e6eb73c44e3e072a8a415e235833/ome.git] on branch develop) ROI Z/T range not shown if any shape has Z/T null. See #9559

comment:16 Changed 7 years ago by Will Moore <will@…>

(In [966a42f89e24dc0027f445215d9291c968e8cba5/ome.git] on branch develop) ROI table handles mixture of Shape types & labels. See #9559

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