Task #9595 (closed)
Opened 12 years ago
Closed 12 years ago
Bug: 1 OME-XML file fails to import
Reported by: | sbesson | Owned by: | mlinkert |
---|---|---|---|
Priority: | critical | Milestone: | OMERO-4.4.4 |
Component: | Bio-Formats | Version: | n.a. |
Keywords: | n.a. | Cc: | jburel, ajpatterson |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | 2012-09-25 (5) |
Description
Using OMERO.insight-4.4.1-486-b319a8c-ice33-b3078-mac on OSX 10.7
Tried to import tubhiswt.ome from test_image_good/ome-xml/samples.
Import marked as failed.
All other OME-XML files import correctly but end up as orphaned (see ticket)
Change History (3)
comment:1 Changed 12 years ago by jburel
comment:2 Changed 12 years ago by mlinkert
- Cc ajpatterson added
- Component changed from Insight to Bio-Formats
- Owner changed from jburel to mlinkert-x
- Sprint set to 2012-09-25 (5)
Problem is that a LightSource? is referenced, but the LightSource? itself doesn't exist in the object graph. Not sure yet if this is a Bio-Formats problem or an upgrade stylesheet problem - I'll find out more in the morning.
Stack trace is:
java.lang.RuntimeException: omero.ApiUsageException serverStackTrace = "ome.conditions.ApiUsageException: Missing reference handler for urn:lsid:loci.wisc.edu:LightSource:OWS1(null) --> omero.model.LightSettings:0:0(ome.model.acquisition.LightSettings:Hash_1324513152) reference. at ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549) at ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237) at sun.reflect.GeneratedMethodAccessor256.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.security.basic.EventHandler.invoke(EventHandler.java:154) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy65.doWork(Unknown Source) at ome.services.util.Executor$Impl.execute(Executor.java:406) at ome.services.util.Executor$Impl.execute(Executor.java:350) at ome.services.throttling.Adapter.run(Adapter.java:51) at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:164) at ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStoreI.java:232) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at omero.cmd.CallContext.invoke(CallContext.java:59) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy97.updateReferences_async(Unknown Source) at omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:106) at omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:201) at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:378) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) " serverExceptionClass = "ome.conditions.ApiUsageException" message = "Missing reference handler for urn:lsid:loci.wisc.edu:LightSource:OWS1(null) --> omero.model.LightSettings:0:0(ome.model.acquisition.LightSettings:Hash_1324513152) reference." at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2159) at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:356) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:538) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6324) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1248) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:679) Caused by: omero.ApiUsageException serverStackTrace = "ome.conditions.ApiUsageException: Missing reference handler for urn:lsid:loci.wisc.edu:LightSource:OWS1(null) --> omero.model.LightSettings:0:0(ome.model.acquisition.LightSettings:Hash_1324513152) reference. at ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549) at ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237) at sun.reflect.GeneratedMethodAccessor256.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.security.basic.EventHandler.invoke(EventHandler.java:154) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy65.doWork(Unknown Source) at ome.services.util.Executor$Impl.execute(Executor.java:406) at ome.services.util.Executor$Impl.execute(Executor.java:350) at ome.services.throttling.Adapter.run(Adapter.java:51) at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:164) at ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStoreI.java:232) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at omero.cmd.CallContext.invoke(CallContext.java:59) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy97.updateReferences_async(Unknown Source) at omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:106) at omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:201) at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:378) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) " serverExceptionClass = "ome.conditions.ApiUsageException" message = "Missing reference handler for urn:lsid:loci.wisc.edu:LightSource:OWS1(null) --> omero.model.LightSettings:0:0(ome.model.acquisition.LightSettings:Hash_1324513152) reference." at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:532) at java.lang.Class.newInstance0(Class.java:372) at java.lang.Class.newInstance(Class.java:325) at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) at IceInternal.BasicStream.throwException(BasicStream.java:1632) at IceInternal.Outgoing.throwUserException(Outgoing.java:442) at omero.api._MetadataStoreDelM.updateReferences(_MetadataStoreDelM.java:315) at omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.java:460) at omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.java:432) at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2143) ... 14 more at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6373) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1248) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:679) Caused by: java.lang.RuntimeException: omero.ApiUsageException serverStackTrace = "ome.conditions.ApiUsageException: Missing reference handler for urn:lsid:loci.wisc.edu:LightSource:OWS1(null) --> omero.model.LightSettings:0:0(ome.model.acquisition.LightSettings:Hash_1324513152) reference. at ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549) at ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237) at sun.reflect.GeneratedMethodAccessor256.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.security.basic.EventHandler.invoke(EventHandler.java:154) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy65.doWork(Unknown Source) at ome.services.util.Executor$Impl.execute(Executor.java:406) at ome.services.util.Executor$Impl.execute(Executor.java:350) at ome.services.throttling.Adapter.run(Adapter.java:51) at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:164) at ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStoreI.java:232) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at omero.cmd.CallContext.invoke(CallContext.java:59) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy97.updateReferences_async(Unknown Source) at omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:106) at omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:201) at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:378) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) " serverExceptionClass = "ome.conditions.ApiUsageException" message = "Missing reference handler for urn:lsid:loci.wisc.edu:LightSource:OWS1(null) --> omero.model.LightSettings:0:0(ome.model.acquisition.LightSettings:Hash_1324513152) reference." at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2159) at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:356) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:538) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6324) ... 11 more Caused by: omero.ApiUsageException serverStackTrace = "ome.conditions.ApiUsageException: Missing reference handler for urn:lsid:loci.wisc.edu:LightSource:OWS1(null) --> omero.model.LightSettings:0:0(ome.model.acquisition.LightSettings:Hash_1324513152) reference. at ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:549) at ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:237) at sun.reflect.GeneratedMethodAccessor256.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:508) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.security.basic.EventHandler.invoke(EventHandler.java:154) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy65.doWork(Unknown Source) at ome.services.util.Executor$Impl.execute(Executor.java:406) at ome.services.util.Executor$Impl.execute(Executor.java:350) at ome.services.throttling.Adapter.run(Adapter.java:51) at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:164) at ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStoreI.java:232) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at omero.cmd.CallContext.invoke(CallContext.java:59) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy97.updateReferences_async(Unknown Source) at omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:106) at omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:201) at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:378) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) " serverExceptionClass = "ome.conditions.ApiUsageException" message = "Missing reference handler for urn:lsid:loci.wisc.edu:LightSource:OWS1(null) --> omero.model.LightSettings:0:0(ome.model.acquisition.LightSettings:Hash_1324513152) reference." at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:532) at java.lang.Class.newInstance0(Class.java:372) at java.lang.Class.newInstance(Class.java:325) at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) at IceInternal.BasicStream.throwException(BasicStream.java:1632) at IceInternal.Outgoing.throwUserException(Outgoing.java:442) at omero.api._MetadataStoreDelM.updateReferences(_MetadataStoreDelM.java:315) at omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.java:460) at omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.java:432) at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2143) ... 14 more
comment:3 Changed 12 years ago by mlinkert
- Resolution set to invalid
- Status changed from new to closed
The problem is that this file has a LightSource? with no Laser, Arc, Filament, etc. underneath it. Discussing with Andrew in devteam, this is not and has never been valid, which means that the problem is with the file itself.
Do you have the error?