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Task #9618 (closed)

Opened 12 years ago

Closed 11 years ago

Fix support for CellSens files with compression code 34712

Reported by:	mlinkert	Owned by:	mlinkert
Priority:	major	Milestone:	OMERO-4.4.7
Component:	Bio-Formats	Version:	n.a.
Keywords:	n.a.	Cc:	olivier.burri@…
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	n.a.

Description

This is some sort of JPEG compression, but unfortunately just adding 34712 to the TiffCompression? enum doesn't do the trick - some special handling is necessary.

See for example cellsens/olivier/14-09-2012/Image_07.vsi

References

Change History (2)

comment:1 Changed 12 years ago by mlinkert

The specific exception thrown here is:

Exception in thread "main" loci.common.enumeration.EnumException: Unable to find TiffCompresssion with code: 34712
	at loci.formats.tiff.TiffCompression.get(TiffCompression.java:220)
	at loci.formats.tiff.IFD.getCompression(IFD.java:664)
	at loci.formats.tiff.IFD.getSamplesPerPixel(IFD.java:638)
	at loci.formats.in.CellSensReader.initFile(CellSensReader.java:425)
	at loci.formats.FormatReader.setId(FormatReader.java:1178)
	at loci.formats.ImageReader.setId(ImageReader.java:729)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:530)
	at loci.formats.tools.ImageInfo.testRead(ImageInfo.java:1003)
	at loci.formats.tools.ImageInfo.main(ImageInfo.java:1048)

comment:2 Changed 11 years ago by mlinkert

Resolution set to fixed
Status changed from new to closed

Fixed here: https://github.com/openmicroscopy/bioformats/pull/319

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