Task #9638 (closed)
Opened 7 years ago
Closed 7 years ago
Bug:Exception when opening .czi files
| Reported by: | jburel | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-4.4.7 |
| Component: | Bio-Formats | Version: | n.a. |
| Keywords: | n.a. | Cc: | |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | 2012-10-23 (1) |
Description
The file was imported using 4.4.2. The problem still exists
Tested using current build
attached an example which has 49x49 pixels, 2 z-stacks, and 1 time point.
java.lang.NullPointerException
at
loci.formats.in.ZeissCZIReader.translateInformation(ZeissCZIReader.java:1066)
at loci.formats.in.ZeissCZIReader.translateMetadata(ZeissCZIReader.java:758)
at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:444)
at loci.formats.FormatReader.setId(FormatReader.java:1105)
at loci.formats.ImageReader.setId(ImageReader.java:695)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:505)
at loci.formats.ChannelFiller.setId(ChannelFiller.java:263)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:505)
at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:274)
http://lists.openmicroscopy.org.uk/pipermail/ome-users/2012-September/003290.html
Attachments (1)
Change History (3)
Changed 7 years ago by jburel
comment:1 Changed 7 years ago by mlinkert
- Sprint set to 2012-10-23 (1)
comment:2 Changed 7 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
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Fixed with: https://github.com/melissalinkert/bioformats/commit/612fe6fda99a3373ca0891fd2ead1db9701dec00