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Task #9638 (closed)

Opened 12 years ago

Closed 11 years ago

Bug:Exception when opening .czi files

Reported by: jburel Owned by: mlinkert
Priority: major Milestone: OMERO-4.4.7
Component: Bio-Formats Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: 2012-10-23 (1)

Description

The file was imported using 4.4.2. The problem still exists
Tested using current build

attached an example which has 49x49 pixels, 2 z-stacks, and 1 time point.

java.lang.NullPointerException
                at
        loci.formats.in.ZeissCZIReader.translateInformation(ZeissCZIReader.java:1066)
                at loci.formats.in.ZeissCZIReader.translateMetadata(ZeissCZIReader.java:758)
                at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:444)
                at loci.formats.FormatReader.setId(FormatReader.java:1105)
                at loci.formats.ImageReader.setId(ImageReader.java:695)
                at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:505)
                at loci.formats.ChannelFiller.setId(ChannelFiller.java:263)
                at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:505)
                at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:274)

http://lists.openmicroscopy.org.uk/pipermail/ome-users/2012-September/003290.html

Attachments (1)

exceptionalize.zip (9.7 KB) - added by jburel 12 years ago.

Download all attachments as: .zip

Change History (3)

Changed 12 years ago by jburel

comment:1 Changed 11 years ago by mlinkert

  • Sprint set to 2012-10-23 (1)

comment:2 Changed 11 years ago by mlinkert

  • Resolution set to fixed
  • Status changed from new to closed
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