Bug:Exception OMERO plugin with Fiji

[saloynton]

I had taken the following steps for the exception below to appear.

• Run update Fiji and restarted
• In the menu option I had chosen to install a new plugin
• Downloaded and installed the lastest imagej/Fiji plugin from the web site.
• Restarted Fiji (I had subsequently done it twice to make sure)
• Selected Plugins > OMERO > Connect to OMERO
• Note:I also had the option Import from OMERO although I did not use this as I was attempting to connect to the ome2-copy.fzk.de demo server.

If you need any further information please let me know.

java.lang.reflect.InvocationTargetException
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at ij.Command.runPlugIn(Command.java:146)
	at ij.Command.runCommand(Command.java:95)
	at ij.Executer.run(Executer.java:64)
	at java.lang.Thread.run(Thread.java:662)
Caused by: java.lang.NoSuchMethodError: org.openmicroscopy.shoola.util.file.IOUtil.isJavaWebStart()Z
	at org.openmicroscopy.shoola.env.Container.getFileRelative(Container.java:269)
	at org.openmicroscopy.shoola.env.Container.getConfigFileRelative(Container.java:257)
	at org.openmicroscopy.shoola.env.Container.getConfigFileRelative(Container.java:246)
	at org.openmicroscopy.shoola.env.init.ContainerConfigInit.execute(ContainerConfigInit.java:81)
	at org.openmicroscopy.shoola.env.init.Initializer.doInit(Initializer.java:276)
	at org.openmicroscopy.shoola.env.Container.startupInPluginMode(Container.java:469)
	at org.openmicroscopy.shoola.env.Container.startupInPluginMode(Container.java:415)
	at org.openmicroscopy.shoola.MainIJPlugin.run(MainIJPlugin.java:256)
	at ij.IJ.runUserPlugIn(IJ.java:185)
	at ij.IJ.runPlugIn(IJ.java:152)
	... 8 more

[jburel]

Scott: did you have 2 omero insight/ij in the plugins folder?

[saloynton]

Yes I was able to run 2 plugins. I was not sure what happened to the automated update in Fiji (I had seen that it had a bug recently). But when I first went to connect to the demo server version (4.4.4) I only had access to the old ImageJ plugin so I was not able to connect to the new version of OMERO. So I installed the new version manually which resulted in the option to choose between the two plugins.

• I have re-checked with a fresh install and completed the automated update and the new imagej plugin and it does work as expected.

[jburel]

Various threads on the imageJ list about issues with the fiji updater

[jburel]

Marking the ticket has invalid, problem related to the Fiji updater itself.