Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #9933 (closed)

Opened 9 years ago

Closed 5 years ago

Bug: some Slidebook files do not open at all

Reported by: mlinkert Owned by:
Priority: major Milestone: Unscheduled
Component: Bio-Formats Version: 4.4.8
Keywords: SlidebookReader, external, our-fault Cc: nikolaus.ehrenfeuchter@…, s.loynton@…, alexia.ferrand@…, kai.schleicher@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

See the files in slidebook/alexia/, which produce something like:

Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: Array index out of range: 2
	at java.util.Vector.get(Vector.java:694)
	at loci.formats.in.SlidebookReader.initFile(SlidebookReader.java:1167)
	at loci.formats.FormatReader.setId(FormatReader.java:1234)
	at loci.formats.ImageReader.setId(ImageReader.java:742)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:542)
	at loci.formats.tools.ImageInfo.testRead(ImageInfo.java:1003)
	at loci.formats.tools.ImageInfo.main(ImageInfo.java:1048)

Change History (7)

comment:1 Changed 9 years ago by mlinkert

See also slidebook/vytas/5.0.35/.

comment:2 Changed 8 years ago by mlinkert

See also QA 7470.

comment:3 Changed 8 years ago by mlinkert

See also QA 7559.

comment:4 Changed 8 years ago by mlinkert

  • Cc kai.schleicher@… added
  • Version set to 4.4.8

comment:5 Changed 6 years ago by jamoore

  • Milestone changed from 5.x to Unscheduled

comment:6 Changed 6 years ago by mlinkert

  • Keywords external our-fault added
  • Owner mlinkert deleted

Expect this to take substantial time given the state of Slidebook support. Closing as wontfix or needsfunding would be OK with me.

comment:7 Changed 5 years ago by sbesson

  • Resolution set to wontfix
  • Status changed from new to closed

As of Bio-Formats 5.2.0, recent Slidebook files can be opened on all platforms using the 3i Slidebook reader. As this reader is completely externalized from Bio-Formats and fully maintained by 3i (see https://www.intelligent-imaging.com/techanswers.php#SLDinFiji), closing all these tickets with wontfix.

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.64148 sec.)

We're Hiring!