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User Story #9946 (closed)

Opened 7 years ago

Closed 5 years ago

Integrate WND-CHRM into OMERO

Reported by: spli Owned by: spli
Priority: critical Milestone: Partner
Component: Services Keywords: analysis
Cc: analysis@… Story Points: n.a.
Sprint: n.a. Importance: n.a.
Total Remaining Time: 0.0d Estimated Remaining Time: n.a.

Description (last modified by spli)

WND-CHRM is currently a standalone application, available as a C++ compiled binary and as a Python module using SWIG bindings.

It should be modified to work with the OMERO Analysis API. Example use cases:

  • Find me all H&E images.
  • Find me all images of muscle tissue.
  • Find me all knee radiographs and group them by a discrete clinical indicator such as Kellgren-Lawrence grade obtained at a 20 year followup (osteoarthritis)
  • Find me all knee radiographs and order them by a continuous variable such as age, weight, blood pressure or other clinical biomarker.

Change History (6)

comment:1 Changed 7 years ago by spli

  • Cc analysis@… added
  • Component changed from General to Services
  • Keywords analysis added
  • Priority changed from minor to critical

comment:2 Changed 7 years ago by spli

  • Description modified (diff)

comment:3 Changed 7 years ago by agilo

  • Status changed from new to accepted

Updated status, related task in progress

comment:4 Changed 6 years ago by spli

  • Milestone changed from Unscheduled to OMERO-4.4.x

comment:5 Changed 6 years ago by jburel

  • Milestone changed from OMERO-4.4.x to Partner

Moving to the "partner" milestone

comment:6 Changed 5 years ago by spli

  • Resolution set to wontfix
  • Status changed from accepted to closed
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