Task #12839 (closed)
Bug: some large .ndpi files cannot be fully read
Reported by: | mlinkert | Owned by: | mlinkert |
---|---|---|---|
Priority: | major | Milestone: | 5.1.2 |
Component: | Bio-Formats | Version: | 5.1.0 |
Keywords: | n.a. | Cc: | qigong@… |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | 0.0d |
Sprint: | n.a. |
Description
See file in hamamatsu/qi and http://lists.openmicroscopy.org.uk/pipermail/ome-users/2015-April/005268.html.
Setting the 'use64Bit' flag unconditionally in NDPIReader seems to help with reading the pixels, but also breaks metadata (e.g. physical pixel size) parsing.
Change History (3)
comment:1 Changed 9 years ago by mlinkert
- Cc qigong@… added
comment:2 Changed 9 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
comment:3 Changed 9 years ago by Melissa Linkert <melissa@…>
- Remaining Time set to 0
(In [caf9b8b8cf61f60898098bc1885f20b80d2e618a/bioformats.git] on branch develop) NDPI: fix tile offsets for files between 2 and 4 GB
Fixes #12839
Fixed with: https://github.com/openmicroscopy/bioformats/pull/1789
The 5.1.2 release of Bio-Formats/OMERO will resolve this problem.