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Task #2232 (closed)

Opened 14 years ago

Closed 14 years ago

Bug: loadAnnotations causes NPE on resetDetails

Reported by: jamoore Owned by: jamoore
Priority: minor Milestone: OMERO-Beta4.2
Component: General Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2010-04-02 (6)

Description

The call to FileAnnotation.setFile() seems to be causing a dirty check.

Change History (4)

comment:1 Changed 14 years ago by jmoore

  • Status changed from new to assigned

comment:2 Changed 14 years ago by jmoore 

omero.InternalException
    serverStackTrace = "ome.conditions.InternalException:  Wrapped Exception: (java.lang.NullPointerException):
                        null
                            at ome.security.basic.OmeroInterceptor.resetDetails(OmeroInterceptor.java:306)
                            at ome.security.basic.OmeroInterceptor.onFlushDirty(OmeroInterceptor.java:181)
                            at org.hibernate.event.def.DefaultFlushEntityEventListener.invokeInterceptor(DefaultFlushEntityEventListener.java:372)
                            at org.hibernate.event.def.DefaultFlushEntityEventListener.handleInterception(DefaultFlushEntityEventListener.java:349)
                            at org.hibernate.event.def.DefaultFlushEntityEventListener.scheduleUpdate(DefaultFlushEntityEventListener.java:287)
                            at org.hibernate.event.def.DefaultFlushEntityEventListener.onFlushEntity(DefaultFlushEntityEventListener.java:155)
                            at org.hibernate.event.def.AbstractFlushingEventListener.flushEntities(AbstractFlushingEventListener.java:219)
                            at org.hibernate.event.def.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:99)
                            at org.hibernate.event.def.DefaultDirtyCheckEventListener.onDirtyCheck(DefaultDirtyCheckEventListener.java:54)
                            at org.hibernate.impl.SessionImpl.isDirty(SessionImpl.java:1192)
                            at ome.security.basic.EventHandler.invoke(EventHandler.java:167)
                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                            at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                            at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                            at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:175)
                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                            at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                            at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                            at $Proxy65.loadAnnotations(Unknown Source)
                            at sun.reflect.GeneratedMethodAccessor321.invoke(Unknown Source)
                            at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
                            at java.lang.reflect.Method.invoke(Method.java:592)
                            at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                            at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                            at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                            at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:40)
                            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                            at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                            at $Proxy65.loadAnnotations(Unknown Source)
                            at sun.reflect.GeneratedMethodAccessor329.invoke(Unknown Source)
                            at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
                            at java.lang.reflect.Method.invoke(Method.java:592)
                            at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)
                            at ome.services.throttling.Callback.run(Callback.java:56)
                            at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
                            at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:128)
                            at ome.services.blitz.impl.MetadataI.loadAnnotations_async(MetadataI.java:85)
                            at omero.api._IMetadataTie.loadAnnotations_async(_IMetadataTie.java:85)
                            at omero.api._IMetadataDisp.___loadAnnotations(_IMetadataDisp.java:177)
                            at omero.api._IMetadataDisp.__dispatch(_IMetadataDisp.java:412)
                            at IceInternal.Incoming.invoke(Incoming.java:159)
                            at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
                            at Ice.ConnectionI.message(ConnectionI.java:972)
                            at IceInternal.ThreadPool.run(ThreadPool.java:577)
                            at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
                            at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
                        "
    serverExceptionClass = "ome.conditions.InternalException"
    message = " Wrapped Exception: (java.lang.NullPointerException):
               null"
    at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
    at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
    at java.lang.reflect.Constructor.newInstance(Constructor.java:501)
    at java.lang.Class.newInstance0(Class.java:350)
    at java.lang.Class.newInstance(Class.java:303)
    at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
    at IceInternal.BasicStream.throwException(BasicStream.java:1632)
    at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
    at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:212)
    at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:252)
    at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:224)
    at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2379)
    at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getExperimenterThumbnailSet(OmeroImageServiceImpl.java:1049)
    at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailSetLoader.loadExperimenterThumbnails(ThumbnailSetLoader.java:245)
    at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailSetLoader.access$3(ThumbnailSetLoader.java:238)
    at org.openmicroscopy.shoola.env.data.views.calls.ThumbnailSetLoader$1.doCall(ThumbnailSetLoader.java:332)
    at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:145)
    at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
    at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
    at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
    at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
    at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
    at java.lang.Thread.run(Thread.java:613)

comment:3 Changed 14 years ago by jmoore

(In [6654]) see #2232 - removing setFile; should still load objects

comment:4 Changed 14 years ago by jmoore

  • Remaining Time changed from 0.25 to 0
  • Resolution set to fixed
  • Status changed from assigned to closed

(In [6657]) fix #2232 - using IQuery.clear to fix NPE

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