| 1 | [bpindelski@3141592 openmicroscopy (dev_4_4)]$ ./build.py -f components/tools/OmeroPy/build.xml test -DTEST=tablestest |
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| 2 | Buildfile: /usr/local/dev/openmicroscopy/components/tools/OmeroPy/build.xml |
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| 3 | Entering /usr/local/dev/openmicroscopy/components/tools/OmeroPy... |
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| 4 | |
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| 5 | python-test: |
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| 6 | Entering /usr/local/dev/openmicroscopy/components/tools/OmeroPy... |
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| 7 | |
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| 8 | python-test-single: |
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| 9 | WARNING: '' not a valid package name; please use only.-separated package names in setup.py |
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| 10 | running test |
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| 11 | running egg_info |
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| 12 | writing target/omero_client.egg-info/PKG-INFO |
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| 13 | writing top-level names to target/omero_client.egg-info/top_level.txt |
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| 14 | writing dependency_links to target/omero_client.egg-info/dependency_links.txt |
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| 15 | reading manifest file 'target/omero_client.egg-info/SOURCES.txt' |
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| 16 | writing manifest file 'target/omero_client.egg-info/SOURCES.txt' |
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| 17 | running build_ext |
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| 18 | testAllColumns_4_4_5 (tablestest.backwards_compatibility.BackwardsCompatibilityTest) ... ok |
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| 19 | testAddSingleRow (tablestest.hdfstorage.TestHdfStorage) ... ok |
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| 20 | testCreationWithMetadata (tablestest.hdfstorage.TestHdfStorage) ... ok |
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| 21 | testHandlesExistingDirectory (tablestest.hdfstorage.TestHdfStorage) ... ok |
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| 22 | testInitializationOnInitializedFileFails (tablestest.hdfstorage.TestHdfStorage) ... ok |
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| 23 | testInvalidFile (tablestest.hdfstorage.TestHdfStorage) ... ok |
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| 24 | testLocking (tablestest.hdfstorage.TestHdfStorage) ... ok |
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| 25 | testMaskColumn (tablestest.hdfstorage.TestHdfStorage) ... ok |
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| 26 | testModifyRow (tablestest.hdfstorage.TestHdfStorage) ... ok |
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| 27 | testReadTicket1951 (tablestest.hdfstorage.TestHdfStorage) ... ok |
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| 28 | testSimpleCreation (tablestest.hdfstorage.TestHdfStorage) ... ok |
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| 29 | testSorting (tablestest.hdfstorage.TestHdfStorage) ... ok |
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| 30 | testStringCol (tablestest.hdfstorage.TestHdfStorage) ... ok |
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| 31 | testValidFile (tablestest.hdfstorage.TestHdfStorage) ... ok |
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| 32 | testErrorInGet (tablestest.servants.TestTables) ... ERROR |
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| 33 | testErrorInStorage (tablestest.servants.TestTables) ... HDF5-DIAG: Error detected in HDF5 (1.8. thread 0: |
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| 34 | #000: H5F.c line 1522 in H5Fopen( unable to open file |
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| 35 | major: File accessability |
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| 36 | minor: Unable to open file |
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| 37 | #001: H5F.c line 1313 in H5F_open( unable to read superblock |
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| 38 | major: File accessability |
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| 39 | minor: Read failed |
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| 40 | #002: H5Fsuper.c line 334 in H5F_super_read( unable to find file signature |
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| 41 | major: File accessability |
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| 42 | minor: Not an HDF5 file |
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| 43 | #003: H5Fsuper.c line 155 in H5F_locate_signature( unable to find a valid file signature |
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| 44 | major: Low-level I/O |
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| 45 | minor: Unable to initialize object |
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| 46 | HDF5-DIAG: Error detected in HDF5 (1.8. thread 0: |
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| 47 | #000: H5F.c line 2589 in H5Fget_mdc_config( not a file ID |
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| 48 | major: Invalid arguments to routine |
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| 49 | minor: Bad value |
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| 50 | HDF5-DIAG: Error detected in HDF5 (1.8. thread 0: |
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| 51 | #000: H5F.c line 2628 in H5Fset_mdc_config( not a file ID |
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| 52 | major: Invalid arguments to routine |
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| 53 | minor: Bad value |
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| 54 | HDF5-DIAG: Error detected in HDF5 (1.8. thread 0: |
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| 55 | #000: H5Adeprec.c line 208 in H5Aopen_name( not a location |
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| 56 | major: Invalid arguments to routine |
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| 57 | minor: Inappropriate type |
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| 58 | #001: H5Gloc.c line 253 in H5G_loc( invalid object ID |
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| 59 | major: Invalid arguments to routine |
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| 60 | minor: Bad value |
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| 61 | HDF5-DIAG: Error detected in HDF5 (1.8. thread 0: |
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| 62 | #000: H5Gdeprec.c line 296 in H5Gopen1( not a location |
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| 63 | major: Invalid arguments to routine |
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| 64 | minor: Inappropriate type |
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| 65 | #001: H5Gloc.c line 253 in H5G_loc( invalid object ID |
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| 66 | major: Invalid arguments to routine |
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| 67 | minor: Bad value |
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| 68 | HDF5-DIAG: Error detected in HDF5 (1.8. thread 0: |
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| 69 | #000: H5G.c line 766 in H5Gclose( not a group |
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| 70 | major: Invalid arguments to routine |
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| 71 | minor: Inappropriate type |
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| 72 | Exception tables.exceptions.HDF5ExtError: HDF5ExtError('Problems closing the Group /',) in ignored |
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| 73 | ok |
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| 74 | testTableAddData (tablestest.servants.TestTables) ... ERROR |
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| 75 | testTableIncrDecr (tablestest.servants.TestTables) ... ERROR |
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| 76 | testTableModifications (tablestest.servants.TestTables) ... ERROR |
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| 77 | testTablePreInitialized (tablestest.servants.TestTables) ... ERROR |
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| 78 | testTableSearch (tablestest.servants.TestTables) ... ERROR |
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| 79 | testTables (tablestest.servants.TestTables) ... ERROR |
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| 80 | testTablesIGetDirGetsRepoGetsSFCantFindRepoFile (tablestest.servants.TestTables) ... ok |
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| 81 | testTablesIGetDirGetsRepoGetsSFCantFindRepoObject (tablestest.servants.TestTables) ... ok |
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| 82 | testTablesIGetDirGetsRepoGetsSFGetsRepo (tablestest.servants.TestTables) ... ok |
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| 83 | testTablesIGetDirGetsRepoThenNoSF (tablestest.servants.TestTables) ... ok |
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| 84 | testTablesIGetDirNoRepoCreated (tablestest.servants.TestTables) ... ok |
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| 85 | testTablesIGetDirNoRepoSet (tablestest.servants.TestTables) ... ok |
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| 86 | test10049openTableUnreadable (tablestest.service.TestTables) ... ok |
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| 87 | test2098 (tablestest.service.TestTables) ... ERROR |
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| 88 | test2855MetadataMethods (tablestest.service.TestTables) ... ERROR |
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| 89 | test2910 (tablestest.service.TestTables) ... ERROR |
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| 90 | test3714GetWhereListVars (tablestest.service.TestTables) ... ERROR |
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| 91 | test4000TableRead (tablestest.service.TestTables) ... ERROR |
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| 92 | testAllColumnsSameTable (tablestest.service.TestTables) ... ERROR |
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| 93 | testArrayColumn (tablestest.service.TestTables) ... ok |
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| 94 | testArrayColumnSize1 (tablestest.service.TestTables) ... ok |
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| 95 | testBlankTable (tablestest.service.TestTables) ... ERROR |
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| 96 | testCallContext (tablestest.service.TestTables) ... ok |
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| 97 | testDelete (tablestest.service.TestTables) ... ok |
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| 98 | testMask (tablestest.service.TestTables) ... ERROR |
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| 99 | testTicket2175 (tablestest.service.TestTables) ... ok |
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| 100 | testUpdate (tablestest.service.TestTables) ... ERROR |
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| 101 | ====================================================================== |
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| 102 | ERROR: testErrorInGet (tablestest.servants.TestTables) |
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| 103 | ---------------------------------------------------------------------- |
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| 104 | Traceback (most recent call last): |
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| 105 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/servants.py", line 318, in testErrorInGet |
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| 106 | table = tables.getTable(f, self.sf, self.current).table # From mock |
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| 107 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 71, in exc_handler |
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| 108 | raise omero.InternalException(msg, None, "Internal exception") |
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| 109 | InternalException: exception ::omero::InternalException |
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| 110 | { |
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| 111 | serverStackTrace = Traceback (most recent call last): |
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| 112 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 61, in exc_handler |
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| 113 | rv = func(*args, **kwargs) |
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| 114 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 28, in handler |
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| 115 | return func(*args, **kwargs) |
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| 116 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/tables.py", line 858, in getTable |
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| 117 | call_context=current.ctx) |
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| 118 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/tables.py", line 505, in __init__ |
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| 119 | self.can_write = factory.getAdminService().canUpdate(file_obj, call_context) |
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| 120 | TypeError: canUpdate() takes exactly 2 arguments (3 given) |
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| 121 | serverExceptionClass = None |
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| 122 | message = Internal exception |
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| 123 | } |
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| 124 | ====================================================================== |
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| 125 | ERROR: testTableAddData (tablestest.servants.TestTables) |
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| 126 | ---------------------------------------------------------------------- |
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| 127 | Traceback (most recent call last): |
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| 128 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/servants.py", line 275, in testTableAddData |
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| 129 | mocktable = self.testTables(newfile) |
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| 130 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/servants.py", line 232, in testTables |
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| 131 | table = tables.getTable(f, self.sf, self.current) |
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| 132 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 71, in exc_handler |
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| 133 | raise omero.InternalException(msg, None, "Internal exception") |
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| 134 | InternalException: exception ::omero::InternalException |
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| 135 | { |
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| 136 | serverStackTrace = Traceback (most recent call last): |
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| 137 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 61, in exc_handler |
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| 138 | rv = func(*args, **kwargs) |
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| 139 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 28, in handler |
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| 140 | return func(*args, **kwargs) |
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| 141 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/tables.py", line 858, in getTable |
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| 142 | call_context=current.ctx) |
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| 143 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/tables.py", line 505, in __init__ |
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| 144 | self.can_write = factory.getAdminService().canUpdate(file_obj, call_context) |
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| 145 | TypeError: canUpdate() takes exactly 2 arguments (3 given) |
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| 146 | serverExceptionClass = None |
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| 147 | message = Internal exception |
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| 148 | } |
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| 149 | ====================================================================== |
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| 150 | ERROR: testTableIncrDecr (tablestest.servants.TestTables) |
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| 151 | ---------------------------------------------------------------------- |
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| 152 | Traceback (most recent call last): |
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| 153 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/servants.py", line 240, in testTableIncrDecr |
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| 154 | table = omero.tables.TableI(self.ctx, omero.model.OriginalFileI(1,None), self.sf, storage) |
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| 155 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/tables.py", line 505, in __init__ |
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| 156 | self.can_write = factory.getAdminService().canUpdate(file_obj, call_context) |
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| 157 | TypeError: canUpdate() takes exactly 2 arguments (3 given) |
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| 158 | ====================================================================== |
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| 159 | ERROR: testTableModifications (tablestest.servants.TestTables) |
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| 160 | ---------------------------------------------------------------------- |
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| 161 | Traceback (most recent call last): |
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| 162 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/servants.py", line 265, in testTableModifications |
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| 163 | mocktable = self.testTables() |
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| 164 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/servants.py", line 232, in testTables |
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| 165 | table = tables.getTable(f, self.sf, self.current) |
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| 166 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 71, in exc_handler |
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| 167 | raise omero.InternalException(msg, None, "Internal exception") |
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| 168 | InternalException: exception ::omero::InternalException |
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| 169 | { |
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| 170 | serverStackTrace = Traceback (most recent call last): |
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| 171 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 61, in exc_handler |
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| 172 | rv = func(*args, **kwargs) |
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| 173 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 28, in handler |
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| 174 | return func(*args, **kwargs) |
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| 175 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/tables.py", line 858, in getTable |
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| 176 | call_context=current.ctx) |
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| 177 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/tables.py", line 505, in __init__ |
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| 178 | self.can_write = factory.getAdminService().canUpdate(file_obj, call_context) |
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| 179 | TypeError: canUpdate() takes exactly 2 arguments (3 given) |
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| 180 | serverExceptionClass = None |
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| 181 | message = Internal exception |
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| 182 | } |
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| 183 | ====================================================================== |
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| 184 | ERROR: testTablePreInitialized (tablestest.servants.TestTables) |
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| 185 | ---------------------------------------------------------------------- |
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| 186 | Traceback (most recent call last): |
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| 187 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/servants.py", line 246, in testTablePreInitialized |
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| 188 | mocktable = self.testTables() |
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| 189 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/servants.py", line 232, in testTables |
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| 190 | table = tables.getTable(f, self.sf, self.current) |
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| 191 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 71, in exc_handler |
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| 192 | raise omero.InternalException(msg, None, "Internal exception") |
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| 193 | InternalException: exception ::omero::InternalException |
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| 194 | { |
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| 195 | serverStackTrace = Traceback (most recent call last): |
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| 196 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 61, in exc_handler |
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| 197 | rv = func(*args, **kwargs) |
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| 198 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 28, in handler |
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| 199 | return func(*args, **kwargs) |
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| 200 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/tables.py", line 858, in getTable |
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| 201 | call_context=current.ctx) |
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| 202 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/tables.py", line 505, in __init__ |
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| 203 | self.can_write = factory.getAdminService().canUpdate(file_obj, call_context) |
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| 204 | TypeError: canUpdate() takes exactly 2 arguments (3 given) |
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| 205 | serverExceptionClass = None |
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| 206 | message = Internal exception |
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| 207 | } |
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| 208 | ====================================================================== |
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| 209 | ERROR: testTableSearch (tablestest.servants.TestTables) |
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| 210 | ---------------------------------------------------------------------- |
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| 211 | Traceback (most recent call last): |
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| 212 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/servants.py", line 290, in testTableSearch |
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| 213 | table = self.testTableAddData(True, False) |
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| 214 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/servants.py", line 275, in testTableAddData |
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| 215 | mocktable = self.testTables(newfile) |
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| 216 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/servants.py", line 232, in testTables |
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| 217 | table = tables.getTable(f, self.sf, self.current) |
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| 218 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 71, in exc_handler |
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| 219 | raise omero.InternalException(msg, None, "Internal exception") |
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| 220 | InternalException: exception ::omero::InternalException |
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| 221 | { |
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| 222 | serverStackTrace = Traceback (most recent call last): |
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| 223 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 61, in exc_handler |
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| 224 | rv = func(*args, **kwargs) |
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| 225 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 28, in handler |
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| 226 | return func(*args, **kwargs) |
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| 227 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/tables.py", line 858, in getTable |
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| 228 | call_context=current.ctx) |
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| 229 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/tables.py", line 505, in __init__ |
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| 230 | self.can_write = factory.getAdminService().canUpdate(file_obj, call_context) |
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| 231 | TypeError: canUpdate() takes exactly 2 arguments (3 given) |
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| 232 | serverExceptionClass = None |
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| 233 | message = Internal exception |
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| 234 | } |
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| 235 | ====================================================================== |
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| 236 | ERROR: testTables (tablestest.servants.TestTables) |
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| 237 | ---------------------------------------------------------------------- |
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| 238 | Traceback (most recent call last): |
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| 239 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/servants.py", line 232, in testTables |
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| 240 | table = tables.getTable(f, self.sf, self.current) |
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| 241 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 71, in exc_handler |
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| 242 | raise omero.InternalException(msg, None, "Internal exception") |
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| 243 | InternalException: exception ::omero::InternalException |
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| 244 | { |
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| 245 | serverStackTrace = Traceback (most recent call last): |
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| 246 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 61, in exc_handler |
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| 247 | rv = func(*args, **kwargs) |
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| 248 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/util/decorators.py", line 28, in handler |
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| 249 | return func(*args, **kwargs) |
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| 250 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/tables.py", line 858, in getTable |
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| 251 | call_context=current.ctx) |
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| 252 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero/tables.py", line 505, in __init__ |
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| 253 | self.can_write = factory.getAdminService().canUpdate(file_obj, call_context) |
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| 254 | TypeError: canUpdate() takes exactly 2 arguments (3 given) |
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| 255 | serverExceptionClass = None |
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| 256 | message = Internal exception |
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| 257 | } |
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| 258 | ====================================================================== |
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| 259 | ERROR: test2098 (tablestest.service.TestTables) |
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| 260 | ---------------------------------------------------------------------- |
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| 261 | Traceback (most recent call last): |
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| 262 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/service.py", line 123, in test2098 |
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| 263 | table.initialize([lc]) |
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| 264 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero_Tables_ice.py", line 844, in initialize |
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| 265 | return _M_omero.grid.Table._op_initialize.invoke(self, ((cols, ), _ctx)) |
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| 266 | ValidationException: exception ::omero::ValidationException |
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| 267 | { |
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| 268 | serverStackTrace = |
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| 269 | serverExceptionClass = |
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| 270 | message = Already initialized. |
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| 271 | } |
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| 272 | ====================================================================== |
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| 273 | ERROR: test2855MetadataMethods (tablestest.service.TestTables) |
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| 274 | ---------------------------------------------------------------------- |
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| 275 | Traceback (most recent call last): |
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| 276 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/service.py", line 159, in test2855MetadataMethods |
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| 277 | table.initialize([lc]) |
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| 278 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero_Tables_ice.py", line 844, in initialize |
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| 279 | return _M_omero.grid.Table._op_initialize.invoke(self, ((cols, ), _ctx)) |
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| 280 | ValidationException: exception ::omero::ValidationException |
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| 281 | { |
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| 282 | serverStackTrace = |
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| 283 | serverExceptionClass = |
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| 284 | message = Already initialized. |
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| 285 | } |
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| 286 | ====================================================================== |
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| 287 | ERROR: test2910 (tablestest.service.TestTables) |
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| 288 | ---------------------------------------------------------------------- |
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| 289 | Traceback (most recent call last): |
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| 290 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/service.py", line 190, in test2910 |
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| 291 | table.initialize([lc]) |
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| 292 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero_Tables_ice.py", line 844, in initialize |
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| 293 | return _M_omero.grid.Table._op_initialize.invoke(self, ((cols, ), _ctx)) |
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| 294 | ValidationException: exception ::omero::ValidationException |
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| 295 | { |
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| 296 | serverStackTrace = |
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| 297 | serverExceptionClass = |
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| 298 | message = Already initialized. |
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| 299 | } |
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| 300 | ====================================================================== |
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| 301 | ERROR: test3714GetWhereListVars (tablestest.service.TestTables) |
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| 302 | ---------------------------------------------------------------------- |
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| 303 | Traceback (most recent call last): |
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| 304 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/service.py", line 228, in test3714GetWhereListVars |
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| 305 | table.initialize([lc]) |
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| 306 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero_Tables_ice.py", line 844, in initialize |
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| 307 | return _M_omero.grid.Table._op_initialize.invoke(self, ((cols, ), _ctx)) |
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| 308 | ValidationException: exception ::omero::ValidationException |
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| 309 | { |
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| 310 | serverStackTrace = |
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| 311 | serverExceptionClass = |
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| 312 | message = Already initialized. |
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| 313 | } |
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| 314 | ====================================================================== |
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| 315 | ERROR: test4000TableRead (tablestest.service.TestTables) |
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| 316 | ---------------------------------------------------------------------- |
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| 317 | Traceback (most recent call last): |
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| 318 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/service.py", line 242, in test4000TableRead |
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| 319 | table.initialize([lc]) |
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| 320 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero_Tables_ice.py", line 844, in initialize |
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| 321 | return _M_omero.grid.Table._op_initialize.invoke(self, ((cols, ), _ctx)) |
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| 322 | ValidationException: exception ::omero::ValidationException |
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| 323 | { |
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| 324 | serverStackTrace = |
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| 325 | serverExceptionClass = |
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| 326 | message = Already initialized. |
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| 327 | } |
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| 328 | ====================================================================== |
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| 329 | ERROR: testAllColumnsSameTable (tablestest.service.TestTables) |
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| 330 | ---------------------------------------------------------------------- |
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| 331 | Traceback (most recent call last): |
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| 332 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/service.py", line 377, in testAllColumnsSameTable |
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| 333 | table.initialize(cols) |
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| 334 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero_Tables_ice.py", line 844, in initialize |
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| 335 | return _M_omero.grid.Table._op_initialize.invoke(self, ((cols, ), _ctx)) |
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| 336 | ValidationException: exception ::omero::ValidationException |
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| 337 | { |
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| 338 | serverStackTrace = |
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| 339 | serverExceptionClass = |
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| 340 | message = Already initialized. |
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| 341 | } |
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| 342 | ====================================================================== |
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| 343 | ERROR: testBlankTable (tablestest.service.TestTables) |
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| 344 | ---------------------------------------------------------------------- |
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| 345 | Traceback (most recent call last): |
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| 346 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/service.py", line 71, in testBlankTable |
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| 347 | table.initialize(cols) |
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| 348 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero_Tables_ice.py", line 844, in initialize |
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| 349 | return _M_omero.grid.Table._op_initialize.invoke(self, ((cols, ), _ctx)) |
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| 350 | ValidationException: exception ::omero::ValidationException |
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| 351 | { |
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| 352 | serverStackTrace = |
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| 353 | serverExceptionClass = |
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| 354 | message = Already initialized. |
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| 355 | } |
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| 356 | ====================================================================== |
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| 357 | ERROR: testMask (tablestest.service.TestTables) |
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| 358 | ---------------------------------------------------------------------- |
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| 359 | Traceback (most recent call last): |
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| 360 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/service.py", line 102, in testMask |
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| 361 | table.initialize([mask]) |
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| 362 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero_Tables_ice.py", line 844, in initialize |
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| 363 | return _M_omero.grid.Table._op_initialize.invoke(self, ((cols, ), _ctx)) |
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| 364 | ValidationException: exception ::omero::ValidationException |
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| 365 | { |
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| 366 | serverStackTrace = |
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| 367 | serverExceptionClass = |
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| 368 | message = Already initialized. |
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| 369 | } |
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| 370 | ====================================================================== |
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| 371 | ERROR: testUpdate (tablestest.service.TestTables) |
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| 372 | ---------------------------------------------------------------------- |
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| 373 | Traceback (most recent call last): |
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| 374 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/service.py", line 78, in testUpdate |
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| 375 | ofile = self.testBlankTable() |
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| 376 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/test/tablestest/service.py", line 71, in testBlankTable |
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| 377 | table.initialize(cols) |
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| 378 | File "/usr/local/dev/openmicroscopy/components/tools/OmeroPy/target/omero_Tables_ice.py", line 844, in initialize |
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| 379 | return _M_omero.grid.Table._op_initialize.invoke(self, ((cols, ), _ctx)) |
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| 380 | ValidationException: exception ::omero::ValidationException |
|---|
| 381 | { |
|---|
| 382 | serverStackTrace = |
|---|
| 383 | serverExceptionClass = |
|---|
| 384 | message = Already initialized. |
|---|
| 385 | } |
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| 386 | ---------------------------------------------------------------------- |
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| 387 | Ran 43 tests in 14.090s |
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| 388 | FAILED (errors=16) |
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| 389 | Uploaded OriginalFile: 19 |
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| 390 | 22 |
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| 391 | Closing remaining open files: /Users/bpindelski/omero/tmp/omero_bpindelski/4908/omerovLJ2gN.tmp/mock.h5... Error in atexit._run_exitfuncs: |
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| 392 | Traceback (most recent call last): |
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| 393 | File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/atexit.py", line 24, in _run_exitfuncs |
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| 394 | func(*targs, **kargs) |
|---|
| 395 | File "/usr/local/src/tables/tables/file.py", line 2331, in close_open_files |
|---|
| 396 | fileh.close() |
|---|
| 397 | File "/usr/local/src/tables/tables/file.py", line 2135, in close |
|---|
| 398 | self.root._f_close() |
|---|
| 399 | AttributeError: 'File' object has no attribute 'root' |
|---|
| 400 | Error in sys.exitfunc: |
|---|
| 401 | Traceback (most recent call last): |
|---|
| 402 | File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/atexit.py", line 24, in _run_exitfuncs |
|---|
| 403 | func(*targs, **kargs) |
|---|
| 404 | File "/usr/local/src/tables/tables/file.py", line 2331, in close_open_files |
|---|
| 405 | fileh.close() |
|---|
| 406 | File "/usr/local/src/tables/tables/file.py", line 2135, in close |
|---|
| 407 | self.root._f_close() |
|---|
| 408 | AttributeError: 'File' object has no attribute 'root' |
|---|
| 409 | Result: 1 |
|---|
| 410 | Entering /usr/local/dev/openmicroscopy/components/tools/OmeroPy... |
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| 411 | |
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| 412 | BUILD SUCCESSFUL |
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| 413 | Total time: 16 seconds |
|---|