Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.

Ticket #10828: Blitz-0.log

File Blitz-0.log, 101.5 KB (added by mtbcarroll, 11 years ago)
Line 
12013-05-01 10:44:49,868 INFO  [                ome.services.blitz.Entry] (      main) Creating OMERO.blitz. Please wait...
22013-05-01 10:44:51,338 INFO  [.s.ShutdownSafeEhcacheManagerFactoryBean] (      main) Initializing EHCache CacheManager
32013-05-01 10:44:51,554 INFO  [  ome.services.util.ServerDirectoryCheck] (      main) Creating /Users/mark/var/omero/FullText
42013-05-01 10:44:51,554 INFO  [  ome.services.util.ServerDirectoryCheck] (      main) Creating /Users/mark/var/omero/ManagedRepository
52013-05-01 10:44:53,374 INFO  [  ome.services.fulltext.FullTextAnalyzer] (      main) Initialized FullTextAnalyzer
62013-05-01 10:44:55,692 INFO  [          ome.services.util.DBPatchCheck] (      main) Verified database patch: OMERO5.0DEV__4
72013-05-01 10:44:55,964 INFO  [        ome.services.db.DatabaseIdentity] (      main) Using LSID format: urn:lsid:export.openmicroscopy.org:%s:5fd7b555-6dd8-47b0-ad79-a23b2859e6f4_%s%s
82013-05-01 10:44:56,564 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401495997] time[565] tag[ome.io.nio.SimpleBackOff.256X256]
92013-05-01 10:44:56,693 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401496564] time[129] tag[ome.io.nio.SimpleBackOff.256X256]
102013-05-01 10:44:56,826 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401496693] time[133] tag[ome.io.nio.SimpleBackOff.256X256]
112013-05-01 10:44:56,884 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401496826] time[57] tag[ome.io.nio.SimpleBackOff.256X256]
122013-05-01 10:44:56,931 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401496884] time[47] tag[ome.io.nio.SimpleBackOff.256X256]
132013-05-01 10:44:56,964 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401496932] time[32] tag[ome.io.nio.SimpleBackOff.256X256]
142013-05-01 10:44:56,994 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401496964] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
152013-05-01 10:44:57,265 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401496994] time[270] tag[ome.io.nio.SimpleBackOff.256X256]
162013-05-01 10:44:57,295 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401497265] time[30] tag[ome.io.nio.SimpleBackOff.256X256]
172013-05-01 10:44:57,324 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401497295] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
182013-05-01 10:44:57,353 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401497324] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
192013-05-01 10:44:57,381 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401497353] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
202013-05-01 10:44:57,410 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401497381] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
212013-05-01 10:44:57,439 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401497410] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
222013-05-01 10:44:57,470 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401497439] time[30] tag[ome.io.nio.SimpleBackOff.256X256]
232013-05-01 10:44:57,509 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401497470] time[39] tag[ome.io.nio.SimpleBackOff.256X256]
242013-05-01 10:44:57,542 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401497510] time[32] tag[ome.io.nio.SimpleBackOff.256X256]
252013-05-01 10:44:57,575 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401497542] time[32] tag[ome.io.nio.SimpleBackOff.256X256]
262013-05-01 10:44:57,605 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401497575] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
272013-05-01 10:44:57,635 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401497605] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
282013-05-01 10:44:57,642 INFO  [                ome.io.nio.PixelsService] (      main) Creating Bio-Formats Cache: /Users/mark/var/omero/BioFormatsCache
292013-05-01 10:44:57,642 INFO  [                ome.io.nio.PixelsService] (      main) PixelsService(path=/Users/mark/var/omero/, resolver=ome.services.OmeroFilePathResolver@1ab214ba, backoff=ome.io.nio.SimpleBackOff(factor=30.3), sizes=ome.io.nio.ConfiguredTileSizes(w=256,h=256,W=3192,H=3192))
302013-05-01 10:44:58,221 INFO  [    ome.services.fulltext.FullTextThread] (      main) Initializing Full-Text Indexer
312013-05-01 10:44:58,230 INFO  [  ome.services.pixeldata.PixelDataThread] (      main) Initializing PixelDataThread (create events only)
322013-05-01 10:44:58,490 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Zip
332013-05-01 10:44:58,491 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: APNG
342013-05-01 10:44:58,494 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: PCX
352013-05-01 10:44:58,497 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Ivision
362013-05-01 10:44:58,499 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: GatanDM2
372013-05-01 10:44:58,506 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: L2D
382013-05-01 10:44:58,507 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Companion/L2D
392013-05-01 10:44:58,508 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: FEI
402013-05-01 10:44:58,509 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: NAF
412013-05-01 10:44:58,510 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: MINC
422013-05-01 10:44:58,511 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: MRW
432013-05-01 10:44:58,512 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: TillVision
442013-05-01 10:44:58,512 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Companion/TillVision
452013-05-01 10:44:58,513 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: ARF
462013-05-01 10:44:58,514 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Cellomics
472013-05-01 10:44:58,515 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: LiFlim
482013-05-01 10:44:58,516 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Targa
492013-05-01 10:44:58,517 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: OxfordInstruments
502013-05-01 10:44:58,518 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: VGSAM
512013-05-01 10:44:58,519 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: HIS
522013-05-01 10:44:58,520 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: WATOP
532013-05-01 10:44:58,521 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Seiko
542013-05-01 10:44:58,521 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Topometrix
552013-05-01 10:44:58,522 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: UBM
562013-05-01 10:44:58,523 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Quesant
572013-05-01 10:44:58,524 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: BioRadGel
582013-05-01 10:44:58,525 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: RHK
592013-05-01 10:44:58,526 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: MolecularImaging
602013-05-01 10:44:58,527 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: CellWorx
612013-05-01 10:44:58,528 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Ecat7
622013-05-01 10:44:58,529 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: VarianFDF
632013-05-01 10:44:58,530 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: AIM
642013-05-01 10:44:58,531 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: InCell3000
652013-05-01 10:44:58,531 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Spider
662013-05-01 10:44:58,532 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Volocity
672013-05-01 10:44:58,533 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Imagic
682013-05-01 10:44:58,534 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: HamamatsuVMS
692013-05-01 10:44:58,535 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: CellSens
702013-05-01 10:44:58,536 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: INR
712013-05-01 10:44:58,537 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Kodak
722013-05-01 10:44:58,537 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: VolocityClipping
732013-05-01 10:44:58,538 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: ZeissCZI
742013-05-01 10:44:58,539 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: SIF
752013-05-01 10:44:58,540 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: NDPIS
762013-05-01 10:44:58,541 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Povray
772013-05-01 10:44:58,541 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: IMOD
782013-05-01 10:44:58,542 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: AFI
792013-05-01 10:44:58,543 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: JEOL
802013-05-01 10:44:58,544 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Nifti
812013-05-01 10:44:58,544 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Companion/Nifti
822013-05-01 10:44:58,545 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Analyze
832013-05-01 10:44:58,546 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Companion/Analyze
842013-05-01 10:44:58,547 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: APL
852013-05-01 10:44:58,548 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Companion/APL
862013-05-01 10:44:58,550 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Amira
872013-05-01 10:44:58,551 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Scanr
882013-05-01 10:44:58,552 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Companion/Scanr
892013-05-01 10:44:58,553 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: BD
902013-05-01 10:44:58,554 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Unisoku
912013-05-01 10:44:58,554 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: PDS
922013-05-01 10:44:58,555 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Fuji
932013-05-01 10:44:58,556 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Operetta
942013-05-01 10:44:58,557 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Inveon
952013-05-01 10:44:58,559 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: JPEG2000
962013-05-01 10:44:58,560 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: JPX
972013-05-01 10:44:58,564 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Imacon
982013-05-01 10:44:58,565 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: LEO
992013-05-01 10:44:58,566 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: JPK
1002013-05-01 10:44:58,567 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: NDPI
1012013-05-01 10:44:58,569 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: PyramidTiff
1022013-05-01 10:44:58,573 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: NikonTiff
1032013-05-01 10:44:58,574 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: PhotoshopTiff
1042013-05-01 10:44:58,574 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: FEITiff
1052013-05-01 10:44:58,575 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: SimplePCITiff
1062013-05-01 10:44:58,576 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: NikonElementsTiff
1072013-05-01 10:44:58,577 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Trestle
1082013-05-01 10:44:58,578 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: SIS
1092013-05-01 10:44:58,578 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: DNG
1102013-05-01 10:44:58,579 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: ZeissTIFF
1112013-05-01 10:44:58,580 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: LeicaSCN
1122013-05-01 10:44:58,581 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: SlidebookTiff
1132013-05-01 10:44:58,582 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: TiffDelegate
1142013-05-01 10:44:58,582 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Text
1152013-05-01 10:44:58,583 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Burleigh
1162013-05-01 10:44:58,584 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: SMCamera
1172013-05-01 10:44:58,585 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: SBIG
1182013-05-01 10:44:58,586 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: HRDGDF
1192013-05-01 10:44:58,587 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Hitachi
1202013-05-01 10:44:58,587 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: Bruker
1212013-05-01 10:44:58,588 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: CanonRaw
1222013-05-01 10:44:58,589 INFO  [           ome.services.util.DBEnumCheck] (      main) Added format: OBF
1232013-05-01 10:44:58,592 INFO  [    ome.services.util.ServerVersionCheck] (      main) -------------------------------------------------
1242013-05-01 10:44:58,592 INFO  [    ome.services.util.ServerVersionCheck] (      main) OMERO Version: 5.0.0-alpha1-DEV-ice33 Ready.
1252013-05-01 10:44:58,592 INFO  [    ome.services.util.ServerVersionCheck] (      main) -------------------------------------------------
1262013-05-01 10:44:59,701 INFO  [                 ome.system.UpgradeCheck] (      main) no update needed
1272013-05-01 10:44:59,706 INFO  [    ome.tools.hibernate.ExtendedMetadata] (      main) Calculating ExtendedMetadata...
1282013-05-01 10:44:59,811 INFO  [      o.s.scheduler.SchedulerFactoryBean] (      main) Starting Quartz Scheduler now
1292013-05-01 10:44:59,816 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.util.NamespaceCheck.namespaceCheck
1302013-05-01 10:44:59,816 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@513956386]
1312013-05-01 10:44:59,974 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=1(Internal),sess=07e610eb-bf1f-4aee-9028-80b36f1038ed
1322013-05-01 10:45:00,103 INFO  [       ome.security.basic.CurrentDetails] (      main) Adding log:INSERT,class ome.model.meta.Namespace,1
1332013-05-01 10:45:00,103 INFO  [        ome.services.util.NamespaceCheck] (      main) Created namespace in common space: openmicroscopy.org/omero/analysis/flim
1342013-05-01 10:45:00,117 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401499816] time[300] tag[omero.call.success.ome.services.util.NamespaceCheck$1.doWork]
1352013-05-01 10:45:00,117 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    null
1362013-05-01 10:45:00,274 INFO  [o.services.blitz.util.BlitzConfiguration] (      main) Initializing Ice.Communicator
1372013-05-01 10:45:00,344 INFO  [            ome.services.blitz.fire.Ring] (      main) Checking cluster
1382013-05-01 10:45:00,352 INFO  [        ome.services.blitz.fire.Registry] (      main) Found 0 cluster node(s) : []
1392013-05-01 10:45:00,352 INFO  [            ome.services.blitz.fire.Ring] (      main) Got 0 cluster uuids : []
1402013-05-01 10:45:00,353 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.getManagerList
1412013-05-01 10:45:00,353 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@513956386]
1422013-05-01 10:45:00,356 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=null(Internal),sess=07e610eb-bf1f-4aee-9028-80b36f1038ed
1432013-05-01 10:45:00,361 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401500353] time[7] tag[omero.call.success.ome.services.blitz.fire.Ring$2.doWork]
1442013-05-01 10:45:00,361 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    ()
1452013-05-01 10:45:00,362 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.addManager
1462013-05-01 10:45:00,362 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@513956386]
1472013-05-01 10:45:00,382 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=2(Internal),sess=07e610eb-bf1f-4aee-9028-80b36f1038ed
1482013-05-01 10:45:00,387 INFO  [       ome.security.basic.CurrentDetails] (      main) Adding log:INSERT,class ome.model.meta.Node,1
1492013-05-01 10:45:00,393 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401500362] time[30] tag[omero.call.success.ome.services.blitz.fire.Ring$5.doWork]
1502013-05-01 10:45:00,393 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    ome.model.meta.Node:Id_1
1512013-05-01 10:45:00,432 INFO  [        ome.services.blitz.fire.Registry] (      main) Added ClusterNode/07e610eb-bf1f-4aee-9028-80b36f1038ed to registry
1522013-05-01 10:45:00,545 INFO  [      o.s.blitz.repo.AbstractRepositoryI] (      main) Initializing repository in /OMERO/
1532013-05-01 10:45:00,557 INFO  [        ome.services.blitz.fire.Registry] (      main) Removed ClusterNode/07e610eb-bf1f-4aee-9028-80b36f1038ed from registry
1542013-05-01 10:45:00,558 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.executeUpdate - set closed = now()
1552013-05-01 10:45:00,558 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@513956386]
1562013-05-01 10:45:00,573 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=3(Internal),sess=07e610eb-bf1f-4aee-9028-80b36f1038ed
1572013-05-01 10:45:00,576 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401500559] time[17] tag[omero.call.success.ome.services.blitz.fire.Ring$3.doWork]
1582013-05-01 10:45:00,576 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    0
1592013-05-01 10:45:00,577 INFO  [            ome.services.blitz.fire.Ring] (      main) Removed 0 entries for 07e610eb-bf1f-4aee-9028-80b36f1038ed
1602013-05-01 10:45:00,577 INFO  [            ome.services.blitz.fire.Ring] (      main) Disconnected from OMERO.cluster
1612013-05-01 10:45:00,577 INFO  [        ome.services.blitz.fire.Registry] (      main) Found 0 cluster node(s) : []
1622013-05-01 10:45:00,578 INFO  [o.services.blitz.util.BlitzConfiguration] (      main) Shutting down Ice.Communicator
1632013-05-01 10:45:00,585 ERROR [                ome.services.blitz.Entry] (      main) Error on startup.
164org.springframework.beans.factory.access.BootstrapException: Unable to return specified BeanFactory instance: factory key [OMERO.blitz], from group with resource name [classpath*:beanRefContext.xml]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'legacyRepository' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/ome/services/blitz-repositories.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
165        at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:409) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
166        at ome.system.OmeroContext.getInstance(OmeroContext.java:203) ~[common.jar:na]
167        at ome.services.blitz.Entry.start(Entry.java:193) [blitz.jar:na]
168        at ome.services.blitz.Entry.main(Entry.java:150) [blitz.jar:na]
169Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'legacyRepository' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/ome/services/blitz-repositories.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
170        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:281) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
171        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:984) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
172        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:888) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
173        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
174        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
175        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
176        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
177        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
178        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
179        at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1048) ~[org.springframework.context.jar:3.0.1.RELEASE-A]
180        at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:397) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
181        ... 3 common frames omitted
182Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'legacyRepository' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/ome/services/blitz-repositories.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
183        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:141) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
184        at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:107) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
185        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:273) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
186        ... 13 common frames omitted
187Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'legacyRepository' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/ome/services/blitz-repositories.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
188        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:281) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
189        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:984) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
190        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:888) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
191        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
192        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
193        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
194        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
195        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
196        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:189) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
197        at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:562) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
198        at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:871) ~[org.springframework.context.jar:3.0.1.RELEASE-A]
199        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:423) ~[org.springframework.context.jar:3.0.1.RELEASE-A]
200        at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139) ~[org.springframework.context.jar:3.0.1.RELEASE-A]
201        at ome.system.OmeroContext.<init>(OmeroContext.java:103) ~[common.jar:na]
202        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.7.0_21]
203        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) ~[na:1.7.0_21]
204        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.7.0_21]
205        at java.lang.reflect.Constructor.newInstance(Constructor.java:525) ~[na:1.7.0_21]
206        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
207        ... 15 common frames omitted
208Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
209        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:141) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
210        at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:107) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
211        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:273) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
212        ... 33 common frames omitted
213Caused by: java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
214        at ome.io.nio.AbstractFileSystemService.<init>(AbstractFileSystemService.java:40) ~[romio.jar:na]
215        at ome.io.nio.OriginalFilesService.<init>(OriginalFilesService.java:39) ~[romio.jar:na]
216        at ome.services.blitz.repo.LegacyRepositoryI.<init>(LegacyRepositoryI.java:42) ~[blitz.jar:na]
217        at ome.services.blitz.repo.LegacyRepositoryI.<init>(LegacyRepositoryI.java:36) ~[blitz.jar:na]
218        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.7.0_21]
219        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) ~[na:1.7.0_21]
220        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.7.0_21]
221        at java.lang.reflect.Constructor.newInstance(Constructor.java:525) ~[na:1.7.0_21]
222        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
223        ... 35 common frames omitted
2242013-05-01 10:45:01,740 INFO  [                ome.services.blitz.Entry] (      main) Creating OMERO.blitz. Please wait...
2252013-05-01 10:45:03,480 INFO  [.s.ShutdownSafeEhcacheManagerFactoryBean] (      main) Initializing EHCache CacheManager
2262013-05-01 10:45:06,591 INFO  [  ome.services.fulltext.FullTextAnalyzer] (      main) Initialized FullTextAnalyzer
2272013-05-01 10:45:10,536 INFO  [          ome.services.util.DBPatchCheck] (      main) Verified database patch: OMERO5.0DEV__4
2282013-05-01 10:45:10,940 INFO  [        ome.services.db.DatabaseIdentity] (      main) Using LSID format: urn:lsid:export.openmicroscopy.org:%s:5fd7b555-6dd8-47b0-ad79-a23b2859e6f4_%s%s
2292013-05-01 10:45:11,651 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401510991] time[660] tag[ome.io.nio.SimpleBackOff.256X256]
2302013-05-01 10:45:11,774 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401511651] time[122] tag[ome.io.nio.SimpleBackOff.256X256]
2312013-05-01 10:45:11,924 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401511774] time[150] tag[ome.io.nio.SimpleBackOff.256X256]
2322013-05-01 10:45:11,958 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401511924] time[33] tag[ome.io.nio.SimpleBackOff.256X256]
2332013-05-01 10:45:12,010 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401511959] time[51] tag[ome.io.nio.SimpleBackOff.256X256]
2342013-05-01 10:45:12,056 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401512010] time[45] tag[ome.io.nio.SimpleBackOff.256X256]
2352013-05-01 10:45:12,350 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401512056] time[294] tag[ome.io.nio.SimpleBackOff.256X256]
2362013-05-01 10:45:12,392 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401512350] time[41] tag[ome.io.nio.SimpleBackOff.256X256]
2372013-05-01 10:45:12,431 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401512392] time[38] tag[ome.io.nio.SimpleBackOff.256X256]
2382013-05-01 10:45:12,464 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401512431] time[33] tag[ome.io.nio.SimpleBackOff.256X256]
2392013-05-01 10:45:12,494 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401512464] time[30] tag[ome.io.nio.SimpleBackOff.256X256]
2402013-05-01 10:45:12,525 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401512494] time[30] tag[ome.io.nio.SimpleBackOff.256X256]
2412013-05-01 10:45:12,555 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401512525] time[30] tag[ome.io.nio.SimpleBackOff.256X256]
2422013-05-01 10:45:12,585 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401512555] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
2432013-05-01 10:45:12,618 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401512585] time[32] tag[ome.io.nio.SimpleBackOff.256X256]
2442013-05-01 10:45:12,652 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401512618] time[34] tag[ome.io.nio.SimpleBackOff.256X256]
2452013-05-01 10:45:12,692 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401512652] time[39] tag[ome.io.nio.SimpleBackOff.256X256]
2462013-05-01 10:45:12,722 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401512692] time[30] tag[ome.io.nio.SimpleBackOff.256X256]
2472013-05-01 10:45:12,751 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401512722] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
2482013-05-01 10:45:12,781 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401512752] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
2492013-05-01 10:45:12,787 INFO  [                ome.io.nio.PixelsService] (      main) Using Bio-Formats Cache: /Users/mark/var/omero/BioFormatsCache
2502013-05-01 10:45:12,788 INFO  [                ome.io.nio.PixelsService] (      main) PixelsService(path=/Users/mark/var/omero/, resolver=ome.services.OmeroFilePathResolver@2332f845, backoff=ome.io.nio.SimpleBackOff(factor=31.1), sizes=ome.io.nio.ConfiguredTileSizes(w=256,h=256,W=3192,H=3192))
2512013-05-01 10:45:13,364 INFO  [    ome.services.fulltext.FullTextThread] (      main) Initializing Full-Text Indexer
2522013-05-01 10:45:13,373 INFO  [  ome.services.pixeldata.PixelDataThread] (      main) Initializing PixelDataThread (create events only)
2532013-05-01 10:45:13,687 INFO  [    ome.services.util.ServerVersionCheck] (      main) -------------------------------------------------
2542013-05-01 10:45:13,687 INFO  [    ome.services.util.ServerVersionCheck] (      main) OMERO Version: 5.0.0-alpha1-DEV-ice33 Ready.
2552013-05-01 10:45:13,687 INFO  [    ome.services.util.ServerVersionCheck] (      main) -------------------------------------------------
2562013-05-01 10:45:15,851 INFO  [                 ome.system.UpgradeCheck] (      main) no update needed
2572013-05-01 10:45:15,856 INFO  [    ome.tools.hibernate.ExtendedMetadata] (      main) Calculating ExtendedMetadata...
2582013-05-01 10:45:15,958 INFO  [      o.s.scheduler.SchedulerFactoryBean] (      main) Starting Quartz Scheduler now
2592013-05-01 10:45:15,963 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.util.NamespaceCheck.namespaceCheck
2602013-05-01 10:45:15,963 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@562889840]
2612013-05-01 10:45:16,141 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=51(Internal),sess=bfecb847-627d-47ed-82ed-d16fb01b234c
2622013-05-01 10:45:16,368 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401515963] time[404] tag[omero.call.success.ome.services.util.NamespaceCheck$1.doWork]
2632013-05-01 10:45:16,369 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    null
2642013-05-01 10:45:16,575 INFO  [o.services.blitz.util.BlitzConfiguration] (      main) Initializing Ice.Communicator
2652013-05-01 10:45:16,647 INFO  [            ome.services.blitz.fire.Ring] (      main) Checking cluster
2662013-05-01 10:45:16,657 INFO  [        ome.services.blitz.fire.Registry] (      main) Found 0 cluster node(s) : []
2672013-05-01 10:45:16,657 INFO  [            ome.services.blitz.fire.Ring] (      main) Got 0 cluster uuids : []
2682013-05-01 10:45:16,658 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.getManagerList
2692013-05-01 10:45:16,658 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@562889840]
2702013-05-01 10:45:16,660 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=null(Internal),sess=bfecb847-627d-47ed-82ed-d16fb01b234c
2712013-05-01 10:45:16,666 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401516658] time[7] tag[omero.call.success.ome.services.blitz.fire.Ring$2.doWork]
2722013-05-01 10:45:16,666 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    (07e610eb-bf1f-4aee-9028-80b36f1038ed)
2732013-05-01 10:45:16,666 INFO  [            ome.services.blitz.fire.Ring] (      main) Purging node: 07e610eb-bf1f-4aee-9028-80b36f1038ed
2742013-05-01 10:45:16,690 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.executeUpdate - set closed = now()
2752013-05-01 10:45:16,690 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@562889840]
2762013-05-01 10:45:16,707 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=52(Internal),sess=bfecb847-627d-47ed-82ed-d16fb01b234c
2772013-05-01 10:45:16,715 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401516690] time[25] tag[omero.call.success.ome.services.blitz.fire.Ring$3.doWork]
2782013-05-01 10:45:16,715 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    0
2792013-05-01 10:45:16,715 INFO  [            ome.services.blitz.fire.Ring] (      main) Removed 0 entries with value 07e610eb-bf1f-4aee-9028-80b36f1038ed
2802013-05-01 10:45:16,716 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.setManagerDown
2812013-05-01 10:45:16,716 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@562889840]
2822013-05-01 10:45:16,730 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=53(Internal),sess=bfecb847-627d-47ed-82ed-d16fb01b234c
2832013-05-01 10:45:16,734 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401516716] time[17] tag[omero.call.success.ome.services.blitz.fire.Ring$4.doWork]
2842013-05-01 10:45:16,734 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    1
2852013-05-01 10:45:16,734 INFO  [            ome.services.blitz.fire.Ring] (      main) Removed manager: 07e610eb-bf1f-4aee-9028-80b36f1038ed
2862013-05-01 10:45:16,734 INFO  [            ome.services.blitz.fire.Ring] (      main) handleRingShutdown: 07e610eb-bf1f-4aee-9028-80b36f1038ed
2872013-05-01 10:45:16,735 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.addManager
2882013-05-01 10:45:16,735 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@562889840]
2892013-05-01 10:45:16,751 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=54(Internal),sess=bfecb847-627d-47ed-82ed-d16fb01b234c
2902013-05-01 10:45:16,756 INFO  [       ome.security.basic.CurrentDetails] (      main) Adding log:INSERT,class ome.model.meta.Node,51
2912013-05-01 10:45:16,763 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401516735] time[28] tag[omero.call.success.ome.services.blitz.fire.Ring$5.doWork]
2922013-05-01 10:45:16,763 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    ome.model.meta.Node:Id_51
2932013-05-01 10:45:16,783 INFO  [        ome.services.blitz.fire.Registry] (      main) Added ClusterNode/bfecb847-627d-47ed-82ed-d16fb01b234c to registry
2942013-05-01 10:45:16,890 INFO  [      o.s.blitz.repo.AbstractRepositoryI] (      main) Initializing repository in /OMERO/
2952013-05-01 10:45:16,903 INFO  [        ome.services.blitz.fire.Registry] (      main) Removed ClusterNode/bfecb847-627d-47ed-82ed-d16fb01b234c from registry
2962013-05-01 10:45:16,904 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.executeUpdate - set closed = now()
2972013-05-01 10:45:16,904 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@562889840]
2982013-05-01 10:45:16,920 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=55(Internal),sess=bfecb847-627d-47ed-82ed-d16fb01b234c
2992013-05-01 10:45:16,924 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401516904] time[19] tag[omero.call.success.ome.services.blitz.fire.Ring$3.doWork]
3002013-05-01 10:45:16,924 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    0
3012013-05-01 10:45:16,924 INFO  [            ome.services.blitz.fire.Ring] (      main) Removed 0 entries for bfecb847-627d-47ed-82ed-d16fb01b234c
3022013-05-01 10:45:16,924 INFO  [            ome.services.blitz.fire.Ring] (      main) Disconnected from OMERO.cluster
3032013-05-01 10:45:16,925 INFO  [        ome.services.blitz.fire.Registry] (      main) Found 0 cluster node(s) : []
3042013-05-01 10:45:16,925 INFO  [o.services.blitz.util.BlitzConfiguration] (      main) Shutting down Ice.Communicator
3052013-05-01 10:45:16,932 ERROR [                ome.services.blitz.Entry] (      main) Error on startup.
306org.springframework.beans.factory.access.BootstrapException: Unable to return specified BeanFactory instance: factory key [OMERO.blitz], from group with resource name [classpath*:beanRefContext.xml]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'legacyRepository' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/ome/services/blitz-repositories.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
307        at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:409) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
308        at ome.system.OmeroContext.getInstance(OmeroContext.java:203) ~[common.jar:na]
309        at ome.services.blitz.Entry.start(Entry.java:193) [blitz.jar:na]
310        at ome.services.blitz.Entry.main(Entry.java:150) [blitz.jar:na]
311Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'legacyRepository' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/ome/services/blitz-repositories.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
312        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:281) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
313        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:984) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
314        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:888) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
315        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
316        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
317        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
318        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
319        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
320        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
321        at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1048) ~[org.springframework.context.jar:3.0.1.RELEASE-A]
322        at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:397) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
323        ... 3 common frames omitted
324Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'legacyRepository' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/ome/services/blitz-repositories.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
325        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:141) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
326        at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:107) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
327        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:273) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
328        ... 13 common frames omitted
329Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'legacyRepository' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/ome/services/blitz-repositories.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
330        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:281) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
331        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:984) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
332        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:888) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
333        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
334        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
335        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
336        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
337        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
338        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:189) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
339        at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:562) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
340        at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:871) ~[org.springframework.context.jar:3.0.1.RELEASE-A]
341        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:423) ~[org.springframework.context.jar:3.0.1.RELEASE-A]
342        at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139) ~[org.springframework.context.jar:3.0.1.RELEASE-A]
343        at ome.system.OmeroContext.<init>(OmeroContext.java:103) ~[common.jar:na]
344        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.7.0_21]
345        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) ~[na:1.7.0_21]
346        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.7.0_21]
347        at java.lang.reflect.Constructor.newInstance(Constructor.java:525) ~[na:1.7.0_21]
348        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
349        ... 15 common frames omitted
350Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
351        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:141) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
352        at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:107) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
353        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:273) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
354        ... 33 common frames omitted
355Caused by: java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
356        at ome.io.nio.AbstractFileSystemService.<init>(AbstractFileSystemService.java:40) ~[romio.jar:na]
357        at ome.io.nio.OriginalFilesService.<init>(OriginalFilesService.java:39) ~[romio.jar:na]
358        at ome.services.blitz.repo.LegacyRepositoryI.<init>(LegacyRepositoryI.java:42) ~[blitz.jar:na]
359        at ome.services.blitz.repo.LegacyRepositoryI.<init>(LegacyRepositoryI.java:36) ~[blitz.jar:na]
360        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.7.0_21]
361        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) ~[na:1.7.0_21]
362        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.7.0_21]
363        at java.lang.reflect.Constructor.newInstance(Constructor.java:525) ~[na:1.7.0_21]
364        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
365        ... 35 common frames omitted
3662013-05-01 10:45:18,324 INFO  [                ome.services.blitz.Entry] (      main) Creating OMERO.blitz. Please wait...
3672013-05-01 10:45:19,456 INFO  [.s.ShutdownSafeEhcacheManagerFactoryBean] (      main) Initializing EHCache CacheManager
3682013-05-01 10:45:21,726 INFO  [  ome.services.fulltext.FullTextAnalyzer] (      main) Initialized FullTextAnalyzer
3692013-05-01 10:45:23,988 INFO  [          ome.services.util.DBPatchCheck] (      main) Verified database patch: OMERO5.0DEV__4
3702013-05-01 10:45:24,325 INFO  [        ome.services.db.DatabaseIdentity] (      main) Using LSID format: urn:lsid:export.openmicroscopy.org:%s:5fd7b555-6dd8-47b0-ad79-a23b2859e6f4_%s%s
3712013-05-01 10:45:24,957 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401524371] time[584] tag[ome.io.nio.SimpleBackOff.256X256]
3722013-05-01 10:45:25,093 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401524957] time[136] tag[ome.io.nio.SimpleBackOff.256X256]
3732013-05-01 10:45:25,226 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525093] time[132] tag[ome.io.nio.SimpleBackOff.256X256]
3742013-05-01 10:45:25,290 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525226] time[63] tag[ome.io.nio.SimpleBackOff.256X256]
3752013-05-01 10:45:25,337 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525290] time[47] tag[ome.io.nio.SimpleBackOff.256X256]
3762013-05-01 10:45:25,369 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525337] time[32] tag[ome.io.nio.SimpleBackOff.256X256]
3772013-05-01 10:45:25,625 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525369] time[255] tag[ome.io.nio.SimpleBackOff.256X256]
3782013-05-01 10:45:25,655 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525625] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
3792013-05-01 10:45:25,684 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525655] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
3802013-05-01 10:45:25,714 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525685] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
3812013-05-01 10:45:25,743 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525714] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
3822013-05-01 10:45:25,771 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525743] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
3832013-05-01 10:45:25,800 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525771] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
3842013-05-01 10:45:25,828 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525800] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
3852013-05-01 10:45:25,857 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525828] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
3862013-05-01 10:45:25,889 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525858] time[31] tag[ome.io.nio.SimpleBackOff.256X256]
3872013-05-01 10:45:25,918 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525889] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
3882013-05-01 10:45:25,946 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525918] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
3892013-05-01 10:45:25,975 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525946] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
3902013-05-01 10:45:26,004 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401525975] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
3912013-05-01 10:45:26,010 INFO  [                ome.io.nio.PixelsService] (      main) Using Bio-Formats Cache: /Users/mark/var/omero/BioFormatsCache
3922013-05-01 10:45:26,011 INFO  [                ome.io.nio.PixelsService] (      main) PixelsService(path=/Users/mark/var/omero/, resolver=ome.services.OmeroFilePathResolver@7efbbbb3, backoff=ome.io.nio.SimpleBackOff(factor=28.5), sizes=ome.io.nio.ConfiguredTileSizes(w=256,h=256,W=3192,H=3192))
3932013-05-01 10:45:26,569 INFO  [    ome.services.fulltext.FullTextThread] (      main) Initializing Full-Text Indexer
3942013-05-01 10:45:26,577 INFO  [  ome.services.pixeldata.PixelDataThread] (      main) Initializing PixelDataThread (create events only)
3952013-05-01 10:45:26,884 INFO  [    ome.services.util.ServerVersionCheck] (      main) -------------------------------------------------
3962013-05-01 10:45:26,885 INFO  [    ome.services.util.ServerVersionCheck] (      main) OMERO Version: 5.0.0-alpha1-DEV-ice33 Ready.
3972013-05-01 10:45:26,885 INFO  [    ome.services.util.ServerVersionCheck] (      main) -------------------------------------------------
3982013-05-01 10:45:28,041 INFO  [                 ome.system.UpgradeCheck] (      main) no update needed
3992013-05-01 10:45:28,045 INFO  [    ome.tools.hibernate.ExtendedMetadata] (      main) Calculating ExtendedMetadata...
4002013-05-01 10:45:28,179 INFO  [      o.s.scheduler.SchedulerFactoryBean] (      main) Starting Quartz Scheduler now
4012013-05-01 10:45:28,186 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.util.NamespaceCheck.namespaceCheck
4022013-05-01 10:45:28,186 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@1315840096]
4032013-05-01 10:45:28,397 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=101(Internal),sess=74a2794b-8030-4ebc-866f-0fae051d451e
4042013-05-01 10:45:28,527 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401528186] time[340] tag[omero.call.success.ome.services.util.NamespaceCheck$1.doWork]
4052013-05-01 10:45:28,527 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    null
4062013-05-01 10:45:28,680 INFO  [o.services.blitz.util.BlitzConfiguration] (      main) Initializing Ice.Communicator
4072013-05-01 10:45:28,747 INFO  [            ome.services.blitz.fire.Ring] (      main) Checking cluster
4082013-05-01 10:45:28,755 INFO  [        ome.services.blitz.fire.Registry] (      main) Found 0 cluster node(s) : []
4092013-05-01 10:45:28,755 INFO  [            ome.services.blitz.fire.Ring] (      main) Got 0 cluster uuids : []
4102013-05-01 10:45:28,755 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.getManagerList
4112013-05-01 10:45:28,755 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@1315840096]
4122013-05-01 10:45:28,758 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=null(Internal),sess=74a2794b-8030-4ebc-866f-0fae051d451e
4132013-05-01 10:45:28,763 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401528755] time[7] tag[omero.call.success.ome.services.blitz.fire.Ring$2.doWork]
4142013-05-01 10:45:28,763 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    (bfecb847-627d-47ed-82ed-d16fb01b234c)
4152013-05-01 10:45:28,763 INFO  [            ome.services.blitz.fire.Ring] (      main) Purging node: bfecb847-627d-47ed-82ed-d16fb01b234c
4162013-05-01 10:45:28,784 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.executeUpdate - set closed = now()
4172013-05-01 10:45:28,784 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@1315840096]
4182013-05-01 10:45:28,800 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=102(Internal),sess=74a2794b-8030-4ebc-866f-0fae051d451e
4192013-05-01 10:45:28,808 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401528784] time[24] tag[omero.call.success.ome.services.blitz.fire.Ring$3.doWork]
4202013-05-01 10:45:28,808 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    0
4212013-05-01 10:45:28,809 INFO  [            ome.services.blitz.fire.Ring] (      main) Removed 0 entries with value bfecb847-627d-47ed-82ed-d16fb01b234c
4222013-05-01 10:45:28,809 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.setManagerDown
4232013-05-01 10:45:28,809 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@1315840096]
4242013-05-01 10:45:28,824 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=103(Internal),sess=74a2794b-8030-4ebc-866f-0fae051d451e
4252013-05-01 10:45:28,827 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401528809] time[18] tag[omero.call.success.ome.services.blitz.fire.Ring$4.doWork]
4262013-05-01 10:45:28,828 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    1
4272013-05-01 10:45:28,828 INFO  [            ome.services.blitz.fire.Ring] (      main) Removed manager: bfecb847-627d-47ed-82ed-d16fb01b234c
4282013-05-01 10:45:28,828 INFO  [            ome.services.blitz.fire.Ring] (      main) handleRingShutdown: bfecb847-627d-47ed-82ed-d16fb01b234c
4292013-05-01 10:45:28,828 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.addManager
4302013-05-01 10:45:28,828 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@1315840096]
4312013-05-01 10:45:28,843 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=104(Internal),sess=74a2794b-8030-4ebc-866f-0fae051d451e
4322013-05-01 10:45:28,847 INFO  [       ome.security.basic.CurrentDetails] (      main) Adding log:INSERT,class ome.model.meta.Node,101
4332013-05-01 10:45:28,855 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401528828] time[26] tag[omero.call.success.ome.services.blitz.fire.Ring$5.doWork]
4342013-05-01 10:45:28,855 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    ome.model.meta.Node:Id_101
4352013-05-01 10:45:28,873 INFO  [        ome.services.blitz.fire.Registry] (      main) Added ClusterNode/74a2794b-8030-4ebc-866f-0fae051d451e to registry
4362013-05-01 10:45:28,984 INFO  [      o.s.blitz.repo.AbstractRepositoryI] (      main) Initializing repository in /OMERO/
4372013-05-01 10:45:28,998 INFO  [        ome.services.blitz.fire.Registry] (      main) Removed ClusterNode/74a2794b-8030-4ebc-866f-0fae051d451e from registry
4382013-05-01 10:45:28,999 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.executeUpdate - set closed = now()
4392013-05-01 10:45:28,999 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@1315840096]
4402013-05-01 10:45:29,012 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=105(Internal),sess=74a2794b-8030-4ebc-866f-0fae051d451e
4412013-05-01 10:45:29,016 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401528999] time[16] tag[omero.call.success.ome.services.blitz.fire.Ring$3.doWork]
4422013-05-01 10:45:29,016 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    0
4432013-05-01 10:45:29,016 INFO  [            ome.services.blitz.fire.Ring] (      main) Removed 0 entries for 74a2794b-8030-4ebc-866f-0fae051d451e
4442013-05-01 10:45:29,016 INFO  [            ome.services.blitz.fire.Ring] (      main) Disconnected from OMERO.cluster
4452013-05-01 10:45:29,017 INFO  [        ome.services.blitz.fire.Registry] (      main) Found 0 cluster node(s) : []
4462013-05-01 10:45:29,017 INFO  [o.services.blitz.util.BlitzConfiguration] (      main) Shutting down Ice.Communicator
4472013-05-01 10:45:29,024 ERROR [                ome.services.blitz.Entry] (      main) Error on startup.
448org.springframework.beans.factory.access.BootstrapException: Unable to return specified BeanFactory instance: factory key [OMERO.blitz], from group with resource name [classpath*:beanRefContext.xml]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'legacyRepository' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/ome/services/blitz-repositories.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
449        at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:409) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
450        at ome.system.OmeroContext.getInstance(OmeroContext.java:203) ~[common.jar:na]
451        at ome.services.blitz.Entry.start(Entry.java:193) [blitz.jar:na]
452        at ome.services.blitz.Entry.main(Entry.java:150) [blitz.jar:na]
453Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'legacyRepository' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/ome/services/blitz-repositories.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
454        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:281) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
455        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:984) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
456        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:888) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
457        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
458        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
459        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
460        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
461        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
462        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
463        at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1048) ~[org.springframework.context.jar:3.0.1.RELEASE-A]
464        at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:397) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
465        ... 3 common frames omitted
466Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'legacyRepository' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/ome/services/blitz-repositories.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
467        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:141) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
468        at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:107) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
469        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:273) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
470        ... 13 common frames omitted
471Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'legacyRepository' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/ome/services/blitz-repositories.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
472        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:281) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
473        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:984) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
474        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:888) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
475        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
476        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
477        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
478        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
479        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
480        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:189) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
481        at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:562) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
482        at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:871) ~[org.springframework.context.jar:3.0.1.RELEASE-A]
483        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:423) ~[org.springframework.context.jar:3.0.1.RELEASE-A]
484        at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139) ~[org.springframework.context.jar:3.0.1.RELEASE-A]
485        at ome.system.OmeroContext.<init>(OmeroContext.java:103) ~[common.jar:na]
486        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.7.0_21]
487        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) ~[na:1.7.0_21]
488        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.7.0_21]
489        at java.lang.reflect.Constructor.newInstance(Constructor.java:525) ~[na:1.7.0_21]
490        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
491        ... 15 common frames omitted
492Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
493        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:141) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
494        at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:107) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
495        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:273) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
496        ... 33 common frames omitted
497Caused by: java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
498        at ome.io.nio.AbstractFileSystemService.<init>(AbstractFileSystemService.java:40) ~[romio.jar:na]
499        at ome.io.nio.OriginalFilesService.<init>(OriginalFilesService.java:39) ~[romio.jar:na]
500        at ome.services.blitz.repo.LegacyRepositoryI.<init>(LegacyRepositoryI.java:42) ~[blitz.jar:na]
501        at ome.services.blitz.repo.LegacyRepositoryI.<init>(LegacyRepositoryI.java:36) ~[blitz.jar:na]
502        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.7.0_21]
503        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) ~[na:1.7.0_21]
504        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.7.0_21]
505        at java.lang.reflect.Constructor.newInstance(Constructor.java:525) ~[na:1.7.0_21]
506        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
507        ... 35 common frames omitted
5082013-05-01 10:45:30,426 INFO  [                ome.services.blitz.Entry] (      main) Creating OMERO.blitz. Please wait...
5092013-05-01 10:45:31,567 INFO  [.s.ShutdownSafeEhcacheManagerFactoryBean] (      main) Initializing EHCache CacheManager
5102013-05-01 10:45:33,764 INFO  [  ome.services.fulltext.FullTextAnalyzer] (      main) Initialized FullTextAnalyzer
5112013-05-01 10:45:36,141 INFO  [          ome.services.util.DBPatchCheck] (      main) Verified database patch: OMERO5.0DEV__4
5122013-05-01 10:45:36,469 INFO  [        ome.services.db.DatabaseIdentity] (      main) Using LSID format: urn:lsid:export.openmicroscopy.org:%s:5fd7b555-6dd8-47b0-ad79-a23b2859e6f4_%s%s
5132013-05-01 10:45:37,073 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401536502] time[571] tag[ome.io.nio.SimpleBackOff.256X256]
5142013-05-01 10:45:37,200 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401537073] time[126] tag[ome.io.nio.SimpleBackOff.256X256]
5152013-05-01 10:45:37,372 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401537200] time[172] tag[ome.io.nio.SimpleBackOff.256X256]
5162013-05-01 10:45:37,434 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401537372] time[61] tag[ome.io.nio.SimpleBackOff.256X256]
5172013-05-01 10:45:37,482 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401537434] time[47] tag[ome.io.nio.SimpleBackOff.256X256]
5182013-05-01 10:45:37,517 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401537482] time[34] tag[ome.io.nio.SimpleBackOff.256X256]
5192013-05-01 10:45:37,547 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401537517] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
5202013-05-01 10:45:37,576 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401537547] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
5212013-05-01 10:45:37,606 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401537576] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
5222013-05-01 10:45:37,635 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401537606] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
5232013-05-01 10:45:37,665 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401537636] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
5242013-05-01 10:45:37,694 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401537665] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
5252013-05-01 10:45:37,722 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401537694] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
5262013-05-01 10:45:37,751 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401537722] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
5272013-05-01 10:45:37,780 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401537752] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
5282013-05-01 10:45:38,220 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401537781] time[438] tag[ome.io.nio.SimpleBackOff.256X256]
5292013-05-01 10:45:38,249 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401538220] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
5302013-05-01 10:45:38,278 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401538249] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
5312013-05-01 10:45:38,308 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401538278] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
5322013-05-01 10:45:38,336 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401538308] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
5332013-05-01 10:45:38,343 INFO  [                ome.io.nio.PixelsService] (      main) Using Bio-Formats Cache: /Users/mark/var/omero/BioFormatsCache
5342013-05-01 10:45:38,344 INFO  [                ome.io.nio.PixelsService] (      main) PixelsService(path=/Users/mark/var/omero/, resolver=ome.services.OmeroFilePathResolver@12fd87b1, backoff=ome.io.nio.SimpleBackOff(factor=69.2), sizes=ome.io.nio.ConfiguredTileSizes(w=256,h=256,W=3192,H=3192))
5352013-05-01 10:45:38,491 INFO  [    ome.services.fulltext.FullTextThread] (      main) Initializing Full-Text Indexer
5362013-05-01 10:45:38,501 INFO  [  ome.services.pixeldata.PixelDataThread] (      main) Initializing PixelDataThread (create events only)
5372013-05-01 10:45:38,807 INFO  [    ome.services.util.ServerVersionCheck] (      main) -------------------------------------------------
5382013-05-01 10:45:38,807 INFO  [    ome.services.util.ServerVersionCheck] (      main) OMERO Version: 5.0.0-alpha1-DEV-ice33 Ready.
5392013-05-01 10:45:38,807 INFO  [    ome.services.util.ServerVersionCheck] (      main) -------------------------------------------------
5402013-05-01 10:45:38,931 INFO  [                 ome.system.UpgradeCheck] (      main) no update needed
5412013-05-01 10:45:38,936 INFO  [    ome.tools.hibernate.ExtendedMetadata] (      main) Calculating ExtendedMetadata...
5422013-05-01 10:45:39,038 INFO  [      o.s.scheduler.SchedulerFactoryBean] (      main) Starting Quartz Scheduler now
5432013-05-01 10:45:39,043 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.util.NamespaceCheck.namespaceCheck
5442013-05-01 10:45:39,043 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@2124516338]
5452013-05-01 10:45:39,199 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=151(Internal),sess=32691641-85c5-4964-ba14-289d64b8581f
5462013-05-01 10:45:39,318 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401539043] time[274] tag[omero.call.success.ome.services.util.NamespaceCheck$1.doWork]
5472013-05-01 10:45:39,318 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    null
5482013-05-01 10:45:39,554 INFO  [o.services.blitz.util.BlitzConfiguration] (      main) Initializing Ice.Communicator
5492013-05-01 10:45:39,622 INFO  [            ome.services.blitz.fire.Ring] (      main) Checking cluster
5502013-05-01 10:45:39,629 INFO  [        ome.services.blitz.fire.Registry] (      main) Found 0 cluster node(s) : []
5512013-05-01 10:45:39,629 INFO  [            ome.services.blitz.fire.Ring] (      main) Got 0 cluster uuids : []
5522013-05-01 10:45:39,630 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.getManagerList
5532013-05-01 10:45:39,630 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@2124516338]
5542013-05-01 10:45:39,633 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=null(Internal),sess=32691641-85c5-4964-ba14-289d64b8581f
5552013-05-01 10:45:39,638 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401539630] time[8] tag[omero.call.success.ome.services.blitz.fire.Ring$2.doWork]
5562013-05-01 10:45:39,638 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    (74a2794b-8030-4ebc-866f-0fae051d451e)
5572013-05-01 10:45:39,639 INFO  [            ome.services.blitz.fire.Ring] (      main) Purging node: 74a2794b-8030-4ebc-866f-0fae051d451e
5582013-05-01 10:45:39,660 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.executeUpdate - set closed = now()
5592013-05-01 10:45:39,660 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@2124516338]
5602013-05-01 10:45:39,677 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=152(Internal),sess=32691641-85c5-4964-ba14-289d64b8581f
5612013-05-01 10:45:39,685 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401539660] time[24] tag[omero.call.success.ome.services.blitz.fire.Ring$3.doWork]
5622013-05-01 10:45:39,685 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    0
5632013-05-01 10:45:39,685 INFO  [            ome.services.blitz.fire.Ring] (      main) Removed 0 entries with value 74a2794b-8030-4ebc-866f-0fae051d451e
5642013-05-01 10:45:39,686 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.setManagerDown
5652013-05-01 10:45:39,686 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@2124516338]
5662013-05-01 10:45:39,700 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=153(Internal),sess=32691641-85c5-4964-ba14-289d64b8581f
5672013-05-01 10:45:39,704 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401539686] time[17] tag[omero.call.success.ome.services.blitz.fire.Ring$4.doWork]
5682013-05-01 10:45:39,704 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    1
5692013-05-01 10:45:39,704 INFO  [            ome.services.blitz.fire.Ring] (      main) Removed manager: 74a2794b-8030-4ebc-866f-0fae051d451e
5702013-05-01 10:45:39,704 INFO  [            ome.services.blitz.fire.Ring] (      main) handleRingShutdown: 74a2794b-8030-4ebc-866f-0fae051d451e
5712013-05-01 10:45:39,705 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.addManager
5722013-05-01 10:45:39,705 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@2124516338]
5732013-05-01 10:45:39,720 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=154(Internal),sess=32691641-85c5-4964-ba14-289d64b8581f
5742013-05-01 10:45:39,725 INFO  [       ome.security.basic.CurrentDetails] (      main) Adding log:INSERT,class ome.model.meta.Node,151
5752013-05-01 10:45:39,734 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401539705] time[29] tag[omero.call.success.ome.services.blitz.fire.Ring$5.doWork]
5762013-05-01 10:45:39,734 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    ome.model.meta.Node:Id_151
5772013-05-01 10:45:39,757 INFO  [        ome.services.blitz.fire.Registry] (      main) Added ClusterNode/32691641-85c5-4964-ba14-289d64b8581f to registry
5782013-05-01 10:45:39,865 INFO  [      o.s.blitz.repo.AbstractRepositoryI] (      main) Initializing repository in /OMERO/
5792013-05-01 10:45:39,881 INFO  [        ome.services.blitz.fire.Registry] (      main) Removed ClusterNode/32691641-85c5-4964-ba14-289d64b8581f from registry
5802013-05-01 10:45:39,882 INFO  [        ome.services.util.ServiceHandler] (      main)  Executor.doWork -- ome.services.blitz.fire.Ring.executeUpdate - set closed = now()
5812013-05-01 10:45:39,882 INFO  [        ome.services.util.ServiceHandler] (      main)  Args:    [null, InternalSF@2124516338]
5822013-05-01 10:45:39,895 INFO  [         ome.security.basic.EventHandler] (      main)  Auth:    user=0,group=0,event=155(Internal),sess=32691641-85c5-4964-ba14-289d64b8581f
5832013-05-01 10:45:39,899 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401539882] time[17] tag[omero.call.success.ome.services.blitz.fire.Ring$3.doWork]
5842013-05-01 10:45:39,899 INFO  [        ome.services.util.ServiceHandler] (      main)  Rslt:    0
5852013-05-01 10:45:39,899 INFO  [            ome.services.blitz.fire.Ring] (      main) Removed 0 entries for 32691641-85c5-4964-ba14-289d64b8581f
5862013-05-01 10:45:39,899 INFO  [            ome.services.blitz.fire.Ring] (      main) Disconnected from OMERO.cluster
5872013-05-01 10:45:39,900 INFO  [        ome.services.blitz.fire.Registry] (      main) Found 0 cluster node(s) : []
5882013-05-01 10:45:39,900 INFO  [o.services.blitz.util.BlitzConfiguration] (      main) Shutting down Ice.Communicator
5892013-05-01 10:45:39,907 ERROR [                ome.services.blitz.Entry] (      main) Error on startup.
590org.springframework.beans.factory.access.BootstrapException: Unable to return specified BeanFactory instance: factory key [OMERO.blitz], from group with resource name [classpath*:beanRefContext.xml]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'legacyRepository' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/ome/services/blitz-repositories.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
591        at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:409) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
592        at ome.system.OmeroContext.getInstance(OmeroContext.java:203) ~[common.jar:na]
593        at ome.services.blitz.Entry.start(Entry.java:193) [blitz.jar:na]
594        at ome.services.blitz.Entry.main(Entry.java:150) [blitz.jar:na]
595Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'legacyRepository' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/ome/services/blitz-repositories.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
596        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:281) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
597        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:984) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
598        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:888) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
599        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
600        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
601        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
602        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
603        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
604        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
605        at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1048) ~[org.springframework.context.jar:3.0.1.RELEASE-A]
606        at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:397) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
607        ... 3 common frames omitted
608Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'legacyRepository' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/ome/services/blitz-repositories.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
609        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:141) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
610        at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:107) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
611        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:273) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
612        ... 13 common frames omitted
613Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'legacyRepository' defined in URL [jar:file:/Users/mark/src/openmicroscopy/dist/lib/server/blitz.jar!/ome/services/blitz-repositories.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
614        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:281) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
615        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:984) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
616        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:888) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
617        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
618        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
619        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
620        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
621        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
622        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:189) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
623        at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:562) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
624        at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:871) ~[org.springframework.context.jar:3.0.1.RELEASE-A]
625        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:423) ~[org.springframework.context.jar:3.0.1.RELEASE-A]
626        at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139) ~[org.springframework.context.jar:3.0.1.RELEASE-A]
627        at ome.system.OmeroContext.<init>(OmeroContext.java:103) ~[common.jar:na]
628        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.7.0_21]
629        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) ~[na:1.7.0_21]
630        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.7.0_21]
631        at java.lang.reflect.Constructor.newInstance(Constructor.java:525) ~[na:1.7.0_21]
632        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
633        ... 15 common frames omitted
634Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.services.blitz.repo.LegacyRepositoryI]: Constructor threw exception; nested exception is java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
635        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:141) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
636        at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:107) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
637        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:273) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
638        ... 33 common frames omitted
639Caused by: java.lang.IllegalArgumentException: Invalid directory specified for file system service./OMERO
640        at ome.io.nio.AbstractFileSystemService.<init>(AbstractFileSystemService.java:40) ~[romio.jar:na]
641        at ome.io.nio.OriginalFilesService.<init>(OriginalFilesService.java:39) ~[romio.jar:na]
642        at ome.services.blitz.repo.LegacyRepositoryI.<init>(LegacyRepositoryI.java:42) ~[blitz.jar:na]
643        at ome.services.blitz.repo.LegacyRepositoryI.<init>(LegacyRepositoryI.java:36) ~[blitz.jar:na]
644        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.7.0_21]
645        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) ~[na:1.7.0_21]
646        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.7.0_21]
647        at java.lang.reflect.Constructor.newInstance(Constructor.java:525) ~[na:1.7.0_21]
648        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126) ~[org.springframework.beans.jar:3.0.1.RELEASE-A]
649        ... 35 common frames omitted
6502013-05-01 10:45:41,315 INFO  [                ome.services.blitz.Entry] (      main) Creating OMERO.blitz. Please wait...
6512013-05-01 10:45:42,437 INFO  [.s.ShutdownSafeEhcacheManagerFactoryBean] (      main) Initializing EHCache CacheManager
6522013-05-01 10:45:44,639 INFO  [  ome.services.fulltext.FullTextAnalyzer] (      main) Initialized FullTextAnalyzer
6532013-05-01 10:45:46,896 INFO  [          ome.services.util.DBPatchCheck] (      main) Verified database patch: OMERO5.0DEV__4
6542013-05-01 10:45:47,171 INFO  [        ome.services.db.DatabaseIdentity] (      main) Using LSID format: urn:lsid:export.openmicroscopy.org:%s:5fd7b555-6dd8-47b0-ad79-a23b2859e6f4_%s%s
6552013-05-01 10:45:47,781 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401547205] time[575] tag[ome.io.nio.SimpleBackOff.256X256]
6562013-05-01 10:45:47,931 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401547782] time[149] tag[ome.io.nio.SimpleBackOff.256X256]
6572013-05-01 10:45:48,079 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401547931] time[147] tag[ome.io.nio.SimpleBackOff.256X256]
6582013-05-01 10:45:48,113 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401548079] time[33] tag[ome.io.nio.SimpleBackOff.256X256]
6592013-05-01 10:45:48,161 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401548113] time[47] tag[ome.io.nio.SimpleBackOff.256X256]
6602013-05-01 10:45:48,196 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401548161] time[35] tag[ome.io.nio.SimpleBackOff.256X256]
6612013-05-01 10:45:48,230 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401548196] time[34] tag[ome.io.nio.SimpleBackOff.256X256]
6622013-05-01 10:45:48,263 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401548230] time[32] tag[ome.io.nio.SimpleBackOff.256X256]
6632013-05-01 10:45:48,293 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401548263] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
6642013-05-01 10:45:48,323 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401548293] time[30] tag[ome.io.nio.SimpleBackOff.256X256]
6652013-05-01 10:45:48,353 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401548324] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
6662013-05-01 10:45:48,381 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401548353] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
6672013-05-01 10:45:48,410 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401548382] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
6682013-05-01 10:45:48,439 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401548410] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
6692013-05-01 10:45:48,469 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401548440] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
6702013-05-01 10:45:48,926 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401548469] time[456] tag[ome.io.nio.SimpleBackOff.256X256]
6712013-05-01 10:45:48,958 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401548926] time[31] tag[ome.io.nio.SimpleBackOff.256X256]
6722013-05-01 10:45:48,989 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401548958] time[31] tag[ome.io.nio.SimpleBackOff.256X256]
6732013-05-01 10:45:49,019 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401548989] time[29] tag[ome.io.nio.SimpleBackOff.256X256]
6742013-05-01 10:45:49,048 INFO  [                 org.perf4j.TimingLogger] (      main) start[1367401549019] time[28] tag[ome.io.nio.SimpleBackOff.256X256]
6752013-05-01 10:45:49,055 INFO  [                ome.io.nio.PixelsService] (      main) Using Bio-Formats Cache: /Users/mark/var/omero/BioFormatsCache
6762013-05-01 10:45:49,055 INFO  [                ome.io.nio.PixelsService] (      main) PixelsService(path=/Users/mark/var/omero/, resolver=ome.services.OmeroFilePathResolver@49ed364e, backoff=ome.io.nio.SimpleBackOff(factor=71.8), sizes=ome.io.nio.ConfiguredTileSizes(w=256,h=256,W=3192,H=3192))
6772013-05-01 10:45:49,207 INFO  [    ome.services.fulltext.FullTextThread] (      main) Initializing Full-Text Indexer
6782013-05-01 10:45:49,216 INFO  [  ome.services.pixeldata.PixelDataThread] (      main) Initializing PixelDataThread (create events only)

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.106645 sec.)

© 2000-2014 University of Dundee & Open Microscopy Environment. Creative Commons Attribution 3.0 Unported License
OME source code is available under the GNU General public license or through commercial license from Glencoe Software

We're Hiring!