1 | 2013-05-08 10:41:37,796 INFO [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: howe.openmicroscopy.org.uk |
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2 | User Name: user-4 -- Password: *** |
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3 | |
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4 | 2013-05-08 10:41:47,875 ERROR [opy.shoola.agents.imviewer.BirdEyeLoader] (entQueue-0) Bird Eye Retrieval Failure: java.lang.Exception: No data available. |
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5 | 2013-05-08 10:43:07,658 ERROR [opy.shoola.agents.imviewer.BirdEyeLoader] (entQueue-0) Bird Eye Retrieval Failure: java.lang.Exception: No data available. |
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6 | 2013-05-08 10:43:26,598 ERROR [opy.shoola.agents.imviewer.BirdEyeLoader] (entQueue-0) Bird Eye Retrieval Failure: java.lang.Exception: No data available. |
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7 | 2013-05-08 10:43:39,380 ERROR [opy.shoola.agents.imviewer.BirdEyeLoader] (entQueue-0) Bird Eye Retrieval Failure: java.lang.Exception: No data available. |
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8 | 2013-05-08 10:44:48,791 INFO [ ome.formats.importer.ImportConfig] (Thread-261) OMERO Version: 4.4.8-47-0c111ca-ice33-b238 |
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9 | 2013-05-08 10:44:48,791 INFO [ ome.formats.importer.ImportConfig] (Thread-261) Bioformats version: 4.4.9-DEV revision: 902a31e date: 8 May 2013 |
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10 | 2013-05-08 10:44:50,044 INFO [ loci.formats.in.MinimalTiffReader] (Thread-261) Reading IFDs |
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11 | 2013-05-08 10:44:50,088 INFO [ loci.formats.in.MinimalTiffReader] (Thread-261) Populating metadata |
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12 | 2013-05-08 10:44:50,112 WARN [ loci.formats.in.JPEG2000MetadataParser] (Thread-261) Unknown JPEG 2000 box 0x2f00 at 8 |
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13 | 2013-05-08 10:44:50,113 INFO [ loci.formats.in.JPEG2000MetadataParser] (Thread-261) File is a raw codestream not a JP2. |
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14 | 2013-05-08 10:44:50,128 WARN [ loci.formats.in.JPEG2000MetadataParser] (Thread-261) Unknown JPEG 2000 box 0x2f00 at 11464317 |
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15 | 2013-05-08 10:44:50,128 INFO [ loci.formats.in.JPEG2000MetadataParser] (Thread-261) File is a raw codestream not a JP2. |
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16 | 2013-05-08 10:44:50,254 INFO [ loci.formats.in.BaseTiffReader] (Thread-261) Populating OME metadata |
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17 | 2013-05-08 10:44:50,266 WARN [ loci.formats.in.BaseTiffReader] (Thread-261) Expected positive value for PhysicalSizeX; got 0.0 |
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18 | 2013-05-08 10:44:50,266 WARN [ loci.formats.in.BaseTiffReader] (Thread-261) Expected positive value for PhysicalSizeY; got 0.0 |
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19 | 2013-05-08 10:44:50,273 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Big image, enabling metadata only and archiving. |
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20 | 2013-05-08 10:44:50,274 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) File format: Aperio SVS |
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21 | 2013-05-08 10:44:50,274 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Base reader: loci.formats.in.SVSReader |
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22 | 2013-05-08 10:44:50,274 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Metadata only import? false |
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23 | 2013-05-08 10:44:50,274 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Archiving enabled? true |
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24 | 2013-05-08 10:44:50,274 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Container metadata only import? true |
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25 | 2013-05-08 10:44:50,274 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Reader is not of HCS domain, use metafile: true |
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26 | 2013-05-08 10:44:50,316 DEBUG [ omero.util.TempFileManager] (Thread-261) Chose global tmpdir: /Users/petr |
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27 | 2013-05-08 10:44:50,320 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT34654760098067212687e685c90-37be-48f2-95f4-6f4a97604af9 |
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28 | 2013-05-08 10:44:50,324 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT61923155925464260910ebf6630-6641-43b7-882e-4cec428cb765 |
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29 | 2013-05-08 10:44:50,326 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT5194145878833861131c4f7c83f-750f-4c9a-807b-3b58f46718fd |
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30 | 2013-05-08 10:44:50,328 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT7454388074414964569798512cd-a23c-4154-86f1-c2c22ab3599c |
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31 | 2013-05-08 10:44:50,330 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT6828408271236166884cf20c8a6-01ae-44fa-bda5-d97f73233c4a |
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32 | 2013-05-08 10:44:50,346 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:2 |
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33 | 2013-05-08 10:44:50,347 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:1 |
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34 | 2013-05-08 10:44:50,347 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:0 |
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35 | 2013-05-08 10:44:50,347 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:4 |
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36 | 2013-05-08 10:44:50,347 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:3 |
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37 | 2013-05-08 10:44:55,278 INFO [ ome.formats.importer.ImportConfig] (Thread-261) OMERO Version: 4.4.8-47-0c111ca-ice33-b238 |
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38 | 2013-05-08 10:44:55,278 INFO [ ome.formats.importer.ImportConfig] (Thread-261) Bioformats version: 4.4.9-DEV revision: 902a31e date: 8 May 2013 |
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39 | 2013-05-08 10:44:56,460 INFO [ loci.formats.in.MinimalTiffReader] (Thread-261) Reading IFDs |
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40 | 2013-05-08 10:44:56,571 INFO [ loci.formats.in.MinimalTiffReader] (Thread-261) Populating metadata |
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41 | 2013-05-08 10:44:56,588 WARN [ loci.formats.in.JPEG2000MetadataParser] (Thread-261) Unknown JPEG 2000 box 0x2f00 at 8 |
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42 | 2013-05-08 10:44:56,588 INFO [ loci.formats.in.JPEG2000MetadataParser] (Thread-261) File is a raw codestream not a JP2. |
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43 | 2013-05-08 10:44:56,598 WARN [ loci.formats.in.JPEG2000MetadataParser] (Thread-261) Unknown JPEG 2000 box 0x2f00 at 27930537 |
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44 | 2013-05-08 10:44:56,598 INFO [ loci.formats.in.JPEG2000MetadataParser] (Thread-261) File is a raw codestream not a JP2. |
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45 | 2013-05-08 10:44:56,600 WARN [ loci.formats.in.JPEG2000MetadataParser] (Thread-261) Unknown JPEG 2000 box 0x2f00 at 31717516 |
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46 | 2013-05-08 10:44:56,600 INFO [ loci.formats.in.JPEG2000MetadataParser] (Thread-261) File is a raw codestream not a JP2. |
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47 | 2013-05-08 10:44:56,702 INFO [ loci.formats.in.BaseTiffReader] (Thread-261) Populating OME metadata |
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48 | 2013-05-08 10:44:56,710 WARN [ loci.formats.in.BaseTiffReader] (Thread-261) Expected positive value for PhysicalSizeX; got 0.0 |
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49 | 2013-05-08 10:44:56,710 WARN [ loci.formats.in.BaseTiffReader] (Thread-261) Expected positive value for PhysicalSizeY; got 0.0 |
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50 | 2013-05-08 10:44:56,714 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Big image, enabling metadata only and archiving. |
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51 | 2013-05-08 10:44:56,714 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) File format: Aperio SVS |
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52 | 2013-05-08 10:44:56,714 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Base reader: loci.formats.in.SVSReader |
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53 | 2013-05-08 10:44:56,714 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Metadata only import? false |
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54 | 2013-05-08 10:44:56,714 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Archiving enabled? true |
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55 | 2013-05-08 10:44:56,714 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Container metadata only import? true |
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56 | 2013-05-08 10:44:56,714 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Reader is not of HCS domain, use metafile: true |
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57 | 2013-05-08 10:44:56,714 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT24493425881310474167943843e-6b0b-4399-8630-5ae76bd98b63 |
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58 | 2013-05-08 10:44:56,715 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT1552574311154288508a3f4a7de-48d5-4591-ac83-91a1a6e4b6e4 |
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59 | 2013-05-08 10:44:56,716 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT1424925835572169366d47f769-7197-4095-891f-12be5dd51dff |
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60 | 2013-05-08 10:44:56,717 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4039374110428325167b7274d4a-cc66-4c43-853a-59f52973ab11 |
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61 | 2013-05-08 10:44:56,718 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT199975244295529845075c56d30-98a0-4b63-9748-b8ab6da3d6f8 |
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62 | 2013-05-08 10:44:56,718 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT5008249526404177614d2a5ac8c-b089-404a-817a-ac239e1e73cb |
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63 | 2013-05-08 10:44:56,725 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:2 |
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64 | 2013-05-08 10:44:56,725 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:1 |
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65 | 2013-05-08 10:44:56,725 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:0 |
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66 | 2013-05-08 10:44:56,725 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:5 |
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67 | 2013-05-08 10:44:56,725 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:4 |
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68 | 2013-05-08 10:44:56,725 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:3 |
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69 | 2013-05-08 10:45:03,350 INFO [ ome.formats.importer.ImportConfig] (Thread-261) OMERO Version: 4.4.8-47-0c111ca-ice33-b238 |
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70 | 2013-05-08 10:45:03,350 INFO [ ome.formats.importer.ImportConfig] (Thread-261) Bioformats version: 4.4.9-DEV revision: 902a31e date: 8 May 2013 |
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71 | 2013-05-08 10:45:04,566 INFO [ loci.formats.in.MinimalTiffReader] (Thread-261) Reading IFDs |
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72 | 2013-05-08 10:45:04,648 INFO [ loci.formats.in.MinimalTiffReader] (Thread-261) Populating metadata |
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73 | 2013-05-08 10:45:04,686 WARN [ loci.formats.in.JPEG2000MetadataParser] (Thread-261) Unknown JPEG 2000 box 0x2f00 at 8 |
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74 | 2013-05-08 10:45:04,686 INFO [ loci.formats.in.JPEG2000MetadataParser] (Thread-261) File is a raw codestream not a JP2. |
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75 | 2013-05-08 10:45:04,701 WARN [ loci.formats.in.JPEG2000MetadataParser] (Thread-261) Unknown JPEG 2000 box 0x2f00 at 50184275 |
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76 | 2013-05-08 10:45:04,701 INFO [ loci.formats.in.JPEG2000MetadataParser] (Thread-261) File is a raw codestream not a JP2. |
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77 | 2013-05-08 10:45:04,701 WARN [ loci.formats.in.JPEG2000MetadataParser] (Thread-261) Unknown JPEG 2000 box 0x2f00 at 56348252 |
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78 | 2013-05-08 10:45:04,701 INFO [ loci.formats.in.JPEG2000MetadataParser] (Thread-261) File is a raw codestream not a JP2. |
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79 | 2013-05-08 10:45:04,822 INFO [ loci.formats.in.BaseTiffReader] (Thread-261) Populating OME metadata |
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80 | 2013-05-08 10:45:04,829 WARN [ loci.formats.in.BaseTiffReader] (Thread-261) Expected positive value for PhysicalSizeX; got 0.0 |
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81 | 2013-05-08 10:45:04,830 WARN [ loci.formats.in.BaseTiffReader] (Thread-261) Expected positive value for PhysicalSizeY; got 0.0 |
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82 | 2013-05-08 10:45:04,833 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Big image, enabling metadata only and archiving. |
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83 | 2013-05-08 10:45:04,833 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) File format: Aperio SVS |
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84 | 2013-05-08 10:45:04,833 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Base reader: loci.formats.in.SVSReader |
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85 | 2013-05-08 10:45:04,833 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Metadata only import? false |
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86 | 2013-05-08 10:45:04,833 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Archiving enabled? true |
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87 | 2013-05-08 10:45:04,833 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Container metadata only import? true |
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88 | 2013-05-08 10:45:04,834 INFO [ ome.formats.importer.ImportLibrary] (Thread-261) Reader is not of HCS domain, use metafile: true |
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89 | 2013-05-08 10:45:04,834 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT74150861603282489541222c766-eb3e-411c-aae2-1bc12a15cb68 |
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90 | 2013-05-08 10:45:04,835 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT6797354123629297788cdd4e9f5-d658-4eb4-a49b-796d2583195e |
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91 | 2013-05-08 10:45:04,835 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT2910794792361520510e8c05d62-081a-4f15-9de8-efad03b32dde |
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92 | 2013-05-08 10:45:04,836 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT3900507743401183320a37774d0-70f6-4fd3-9901-ab78b321ea89 |
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93 | 2013-05-08 10:45:04,836 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT901164892747045075d3f01266-9312-4664-9809-d82de4a2b626 |
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94 | 2013-05-08 10:45:04,837 DEBUG [ omero.util.TempFileManager] (Thread-261) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT816655845201659806464ed35b9-6cf3-4f72-b72e-a7dbfad54577 |
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95 | 2013-05-08 10:45:04,841 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:2 |
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96 | 2013-05-08 10:45:04,841 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:1 |
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97 | 2013-05-08 10:45:04,841 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:0 |
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98 | 2013-05-08 10:45:04,841 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:5 |
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99 | 2013-05-08 10:45:04,841 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:4 |
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100 | 2013-05-08 10:45:04,841 WARN [ ome.formats.model.ReferenceProcessor] (Thread-261) Unknown target class for LSID: Image:3 |
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101 | 2013-05-08 10:45:32,909 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
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102 | Cannot start the Raw pixels store. |
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103 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
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104 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
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105 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
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106 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
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107 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
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108 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
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109 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
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110 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
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111 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
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112 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
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113 | at java.lang.Thread.run(Thread.java:680) |
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114 | Caused by: omero.MissingPyramidException |
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115 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59867_pyramid |
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116 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
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117 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
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118 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
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119 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
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120 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
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121 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
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122 | at java.lang.reflect.Method.invoke(Method.java:592) |
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123 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
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124 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
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125 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
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126 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
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127 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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128 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
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129 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
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130 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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131 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
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132 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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133 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
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134 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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135 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
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136 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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137 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
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138 | at $Proxy88.setPixelsId(Unknown Source) |
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139 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
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140 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
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141 | at java.lang.reflect.Method.invoke(Method.java:592) |
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142 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
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143 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
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144 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
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145 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
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146 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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147 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
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148 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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149 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
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150 | at $Proxy88.setPixelsId(Unknown Source) |
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151 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
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152 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
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153 | at java.lang.reflect.Method.invoke(Method.java:592) |
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154 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
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155 | at ome.services.throttling.Callback.run(Callback.java:56) |
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156 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
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157 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
158 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
159 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
160 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
161 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
162 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
163 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
164 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
165 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
166 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
167 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
168 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
169 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
170 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
171 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
172 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
173 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
174 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
175 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
176 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
177 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
178 | " |
---|
179 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
180 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59867_pyramid" |
---|
181 | backOff = 2588164 |
---|
182 | pixelsID = 59867 |
---|
183 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
184 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
185 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
186 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
187 | at java.lang.Class.newInstance0(Class.java:355) |
---|
188 | at java.lang.Class.newInstance(Class.java:308) |
---|
189 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
190 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
191 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
192 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
193 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
194 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
195 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
196 | ... 9 more |
---|
197 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
198 | Cannot start the Raw pixels store. |
---|
199 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
200 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
201 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
202 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
203 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
204 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
205 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
206 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
207 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
208 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
209 | at java.lang.Thread.run(Thread.java:680) |
---|
210 | Caused by: omero.MissingPyramidException |
---|
211 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59867_pyramid |
---|
212 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
213 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
214 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
215 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
216 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
217 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
218 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
219 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
220 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
221 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
222 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
223 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
224 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
225 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
226 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
227 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
228 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
229 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
230 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
231 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
232 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
233 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
234 | at $Proxy88.setPixelsId(Unknown Source) |
---|
235 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
236 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
237 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
238 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
239 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
240 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
241 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
242 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
243 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
244 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
245 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
246 | at $Proxy88.setPixelsId(Unknown Source) |
---|
247 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
248 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
249 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
250 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
251 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
252 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
253 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
254 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
255 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
256 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
257 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
258 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
259 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
260 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
261 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
262 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
263 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
264 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
265 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
266 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
267 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
268 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
269 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
270 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
271 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
272 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
273 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
274 | " |
---|
275 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
276 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59867_pyramid" |
---|
277 | backOff = 2588164 |
---|
278 | pixelsID = 59867 |
---|
279 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
280 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
281 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
282 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
283 | at java.lang.Class.newInstance0(Class.java:355) |
---|
284 | at java.lang.Class.newInstance(Class.java:308) |
---|
285 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
286 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
287 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
288 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
289 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
290 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
291 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
292 | ... 9 more |
---|
293 | Exception in thread "AWT-EventQueue-0" |
---|
294 | |
---|
295 | 2013-05-08 10:45:33,161 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
296 | Cannot start the Raw pixels store. |
---|
297 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
298 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
299 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
300 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
301 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
302 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
303 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
304 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
305 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
306 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
307 | at java.lang.Thread.run(Thread.java:680) |
---|
308 | Caused by: omero.MissingPyramidException |
---|
309 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59867_pyramid |
---|
310 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
311 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
312 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
313 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
314 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
315 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
316 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
317 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
318 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
319 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
320 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
321 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
322 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
323 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
324 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
325 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
326 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
327 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
328 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
329 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
330 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
331 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
332 | at $Proxy88.setPixelsId(Unknown Source) |
---|
333 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
334 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
335 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
336 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
337 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
338 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
339 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
340 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
341 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
342 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
343 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
344 | at $Proxy88.setPixelsId(Unknown Source) |
---|
345 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
346 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
347 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
348 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
349 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
350 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
351 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
352 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
353 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
354 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
355 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
356 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
357 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
358 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
359 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
360 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
361 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
362 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
363 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
364 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
365 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
366 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
367 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
368 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
369 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
370 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
371 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
372 | " |
---|
373 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
374 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59867_pyramid" |
---|
375 | backOff = 2588164 |
---|
376 | pixelsID = 59867 |
---|
377 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
378 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
379 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
380 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
381 | at java.lang.Class.newInstance0(Class.java:355) |
---|
382 | at java.lang.Class.newInstance(Class.java:308) |
---|
383 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
384 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
385 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
386 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
387 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
388 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
389 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
390 | ... 9 more |
---|
391 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
392 | Cannot start the Raw pixels store. |
---|
393 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
394 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
395 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
396 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
397 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
398 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
399 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
400 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
401 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
402 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
403 | at java.lang.Thread.run(Thread.java:680) |
---|
404 | Caused by: omero.MissingPyramidException |
---|
405 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59867_pyramid |
---|
406 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
407 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
408 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
409 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
410 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
411 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
412 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
413 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
414 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
415 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
416 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
417 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
418 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
419 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
420 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
421 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
422 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
423 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
424 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
425 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
426 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
427 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
428 | at $Proxy88.setPixelsId(Unknown Source) |
---|
429 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
430 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
431 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
432 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
433 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
434 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
435 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
436 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
437 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
438 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
439 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
440 | at $Proxy88.setPixelsId(Unknown Source) |
---|
441 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
442 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
443 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
444 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
445 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
446 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
447 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
448 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
449 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
450 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
451 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
452 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
453 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
454 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
455 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
456 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
457 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
458 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
459 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
460 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
461 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
462 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
463 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
464 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
465 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
466 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
467 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
468 | " |
---|
469 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
470 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59867_pyramid" |
---|
471 | backOff = 2588164 |
---|
472 | pixelsID = 59867 |
---|
473 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
474 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
475 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
476 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
477 | at java.lang.Class.newInstance0(Class.java:355) |
---|
478 | at java.lang.Class.newInstance(Class.java:308) |
---|
479 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
480 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
481 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
482 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
483 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
484 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
485 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
486 | ... 9 more |
---|
487 | Exception in thread "AWT-EventQueue-0" |
---|
488 | |
---|
489 | 2013-05-08 10:45:33,194 ERROR [a.agents.metadata.RenderingControlLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
490 | Cannot start the Raw pixels store. |
---|
491 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
492 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
493 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getNumberOfRenderingEngines(OmeroImageServiceImpl.java:164) |
---|
494 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:606) |
---|
495 | at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97) |
---|
496 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
497 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
498 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
499 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
500 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
501 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
502 | at java.lang.Thread.run(Thread.java:680) |
---|
503 | Caused by: omero.MissingPyramidException |
---|
504 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59867_pyramid |
---|
505 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
506 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
507 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
508 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
509 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
510 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
511 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
512 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
513 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
514 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
515 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
516 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
517 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
518 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
519 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
520 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
521 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
522 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
523 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
524 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
525 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
526 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
527 | at $Proxy88.setPixelsId(Unknown Source) |
---|
528 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
529 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
530 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
531 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
532 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
533 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
534 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
535 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
536 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
537 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
538 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
539 | at $Proxy88.setPixelsId(Unknown Source) |
---|
540 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
541 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
542 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
543 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
544 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
545 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
546 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
547 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
548 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
549 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
550 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
551 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
552 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
553 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
554 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
555 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
556 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
557 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
558 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
559 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
560 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
561 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
562 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
563 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
564 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
565 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
566 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
567 | " |
---|
568 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
569 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59867_pyramid" |
---|
570 | backOff = 2588164 |
---|
571 | pixelsID = 59867 |
---|
572 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
573 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
574 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
575 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
576 | at java.lang.Class.newInstance0(Class.java:355) |
---|
577 | at java.lang.Class.newInstance(Class.java:308) |
---|
578 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
579 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
580 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
581 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
582 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
583 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
584 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
585 | ... 10 more |
---|
586 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
587 | Cannot start the Raw pixels store. |
---|
588 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
589 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
590 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getNumberOfRenderingEngines(OmeroImageServiceImpl.java:164) |
---|
591 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:606) |
---|
592 | at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97) |
---|
593 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
594 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
595 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
596 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
597 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
598 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
599 | at java.lang.Thread.run(Thread.java:680) |
---|
600 | Caused by: omero.MissingPyramidException |
---|
601 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59867_pyramid |
---|
602 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
603 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
604 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
605 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
606 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
607 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
608 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
609 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
610 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
611 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
612 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
613 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
614 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
615 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
616 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
617 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
618 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
619 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
620 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
621 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
622 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
623 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
624 | at $Proxy88.setPixelsId(Unknown Source) |
---|
625 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
626 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
627 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
628 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
629 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
630 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
631 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
632 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
633 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
634 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
635 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
636 | at $Proxy88.setPixelsId(Unknown Source) |
---|
637 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
638 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
639 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
640 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
641 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
642 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
643 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
644 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
645 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
646 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
647 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
648 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
649 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
650 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
651 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
652 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
653 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
654 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
655 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
656 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
657 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
658 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
659 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
660 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
661 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
662 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
663 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
664 | " |
---|
665 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
666 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59867_pyramid" |
---|
667 | backOff = 2588164 |
---|
668 | pixelsID = 59867 |
---|
669 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
670 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
671 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
672 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
673 | at java.lang.Class.newInstance0(Class.java:355) |
---|
674 | at java.lang.Class.newInstance(Class.java:308) |
---|
675 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
676 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
677 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
678 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
679 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
680 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
681 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
682 | ... 10 more |
---|
683 | Exception in thread "AWT-EventQueue-0" |
---|
684 | |
---|
685 | 2013-05-08 10:45:35,871 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
686 | Cannot start the Raw pixels store. |
---|
687 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
688 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
689 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
690 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
691 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
692 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
693 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
694 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
695 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
696 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
697 | at java.lang.Thread.run(Thread.java:680) |
---|
698 | Caused by: omero.MissingPyramidException |
---|
699 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59868_pyramid |
---|
700 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
701 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
702 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
703 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
704 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
705 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
706 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
707 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
708 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
709 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
710 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
711 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
712 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
713 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
714 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
715 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
716 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
717 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
718 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
719 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
720 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
721 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
722 | at $Proxy88.setPixelsId(Unknown Source) |
---|
723 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
724 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
725 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
726 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
727 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
728 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
729 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
730 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
731 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
732 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
733 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
734 | at $Proxy88.setPixelsId(Unknown Source) |
---|
735 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
736 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
737 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
738 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
739 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
740 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
741 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
742 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
743 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
744 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
745 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
746 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
747 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
748 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
749 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
750 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
751 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
752 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
753 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
754 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
755 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
756 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
757 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
758 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
759 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
760 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
761 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
762 | " |
---|
763 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
764 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59868_pyramid" |
---|
765 | backOff = 5522 |
---|
766 | pixelsID = 59868 |
---|
767 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
768 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
769 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
770 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
771 | at java.lang.Class.newInstance0(Class.java:355) |
---|
772 | at java.lang.Class.newInstance(Class.java:308) |
---|
773 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
774 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
775 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
776 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
777 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
778 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
779 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
780 | ... 9 more |
---|
781 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
782 | Cannot start the Raw pixels store. |
---|
783 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
784 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
785 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
786 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
787 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
788 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
789 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
790 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
791 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
792 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
793 | at java.lang.Thread.run(Thread.java:680) |
---|
794 | Caused by: omero.MissingPyramidException |
---|
795 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59868_pyramid |
---|
796 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
797 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
798 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
799 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
800 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
801 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
802 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
803 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
804 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
805 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
806 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
807 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
808 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
809 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
810 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
811 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
812 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
813 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
814 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
815 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
816 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
817 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
818 | at $Proxy88.setPixelsId(Unknown Source) |
---|
819 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
820 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
821 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
822 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
823 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
824 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
825 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
826 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
827 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
828 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
829 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
830 | at $Proxy88.setPixelsId(Unknown Source) |
---|
831 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
832 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
833 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
834 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
835 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
836 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
837 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
838 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
839 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
840 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
841 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
842 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
843 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
844 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
845 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
846 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
847 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
848 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
849 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
850 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
851 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
852 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
853 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
854 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
855 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
856 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
857 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
858 | " |
---|
859 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
860 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59868_pyramid" |
---|
861 | backOff = 5522 |
---|
862 | pixelsID = 59868 |
---|
863 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
864 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
865 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
866 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
867 | at java.lang.Class.newInstance0(Class.java:355) |
---|
868 | at java.lang.Class.newInstance(Class.java:308) |
---|
869 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
870 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
871 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
872 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
873 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
874 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
875 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
876 | ... 9 more |
---|
877 | Exception in thread "AWT-EventQueue-0" |
---|
878 | |
---|
879 | 2013-05-08 10:45:36,121 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
880 | Cannot start the Raw pixels store. |
---|
881 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
882 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
883 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
884 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
885 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
886 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
887 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
888 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
889 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
890 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
891 | at java.lang.Thread.run(Thread.java:680) |
---|
892 | Caused by: omero.MissingPyramidException |
---|
893 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59868_pyramid |
---|
894 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
895 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
896 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
897 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
898 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
899 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
900 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
901 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
902 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
903 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
904 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
905 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
906 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
907 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
908 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
909 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
910 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
911 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
912 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
913 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
914 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
915 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
916 | at $Proxy88.setPixelsId(Unknown Source) |
---|
917 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
918 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
919 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
920 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
921 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
922 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
923 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
924 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
925 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
926 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
927 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
928 | at $Proxy88.setPixelsId(Unknown Source) |
---|
929 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
930 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
931 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
932 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
933 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
934 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
935 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
936 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
937 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
938 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
939 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
940 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
941 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
942 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
943 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
944 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
945 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
946 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
947 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
948 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
949 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
950 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
951 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
952 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
953 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
954 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
955 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
956 | " |
---|
957 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
958 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59868_pyramid" |
---|
959 | backOff = 5522 |
---|
960 | pixelsID = 59868 |
---|
961 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
962 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
963 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
964 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
965 | at java.lang.Class.newInstance0(Class.java:355) |
---|
966 | at java.lang.Class.newInstance(Class.java:308) |
---|
967 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
968 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
969 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
970 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
971 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
972 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
973 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
974 | ... 9 more |
---|
975 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
976 | Cannot start the Raw pixels store. |
---|
977 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
978 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
979 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
980 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
981 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
982 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
983 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
984 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
985 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
986 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
987 | at java.lang.Thread.run(Thread.java:680) |
---|
988 | Caused by: omero.MissingPyramidException |
---|
989 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59868_pyramid |
---|
990 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
991 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
992 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
993 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
994 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
995 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
996 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
997 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
998 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
999 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1000 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
1001 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1002 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
1003 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
1004 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1005 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
1006 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1007 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
1008 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1009 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
1010 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1011 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1012 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1013 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1014 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1015 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1016 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1017 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1018 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1019 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
1020 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1021 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
1022 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1023 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1024 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1025 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
1026 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1027 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1028 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
1029 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
1030 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
1031 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
1032 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
1033 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
1034 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1035 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1036 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1037 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1038 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1039 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
1040 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1041 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1042 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
1043 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
1044 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
1045 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
1046 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
1047 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
1048 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
1049 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
1050 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
1051 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
1052 | " |
---|
1053 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
1054 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59868_pyramid" |
---|
1055 | backOff = 5522 |
---|
1056 | pixelsID = 59868 |
---|
1057 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
1058 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
1059 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
1060 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
1061 | at java.lang.Class.newInstance0(Class.java:355) |
---|
1062 | at java.lang.Class.newInstance(Class.java:308) |
---|
1063 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
1064 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
1065 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
1066 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
1067 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
1068 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
1069 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
1070 | ... 9 more |
---|
1071 | Exception in thread "AWT-EventQueue-0" |
---|
1072 | |
---|
1073 | 2013-05-08 10:45:36,133 ERROR [a.agents.metadata.RenderingControlLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1074 | Cannot start the Raw pixels store. |
---|
1075 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
1076 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
1077 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getNumberOfRenderingEngines(OmeroImageServiceImpl.java:164) |
---|
1078 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:606) |
---|
1079 | at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97) |
---|
1080 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1081 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1082 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1083 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1084 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1085 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1086 | at java.lang.Thread.run(Thread.java:680) |
---|
1087 | Caused by: omero.MissingPyramidException |
---|
1088 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59868_pyramid |
---|
1089 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
1090 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
1091 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
1092 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
1093 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1094 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1095 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1096 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1097 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1098 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1099 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
1100 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1101 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
1102 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
1103 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1104 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
1105 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1106 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
1107 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1108 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
1109 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1110 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1111 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1112 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1113 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1114 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1115 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1116 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1117 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1118 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
1119 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1120 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
1121 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1122 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1123 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1124 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
1125 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1126 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1127 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
1128 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
1129 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
1130 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
1131 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
1132 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
1133 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1134 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1135 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1136 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1137 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1138 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
1139 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1140 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1141 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
1142 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
1143 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
1144 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
1145 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
1146 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
1147 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
1148 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
1149 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
1150 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
1151 | " |
---|
1152 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
1153 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59868_pyramid" |
---|
1154 | backOff = 5522 |
---|
1155 | pixelsID = 59868 |
---|
1156 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
1157 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
1158 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
1159 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
1160 | at java.lang.Class.newInstance0(Class.java:355) |
---|
1161 | at java.lang.Class.newInstance(Class.java:308) |
---|
1162 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
1163 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
1164 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
1165 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
1166 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
1167 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
1168 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
1169 | ... 10 more |
---|
1170 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1171 | Cannot start the Raw pixels store. |
---|
1172 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
1173 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
1174 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getNumberOfRenderingEngines(OmeroImageServiceImpl.java:164) |
---|
1175 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:606) |
---|
1176 | at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97) |
---|
1177 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1178 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1179 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1180 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1181 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1182 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1183 | at java.lang.Thread.run(Thread.java:680) |
---|
1184 | Caused by: omero.MissingPyramidException |
---|
1185 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59868_pyramid |
---|
1186 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
1187 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
1188 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
1189 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
1190 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1191 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1192 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1193 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1194 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1195 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1196 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
1197 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1198 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
1199 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
1200 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1201 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
1202 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1203 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
1204 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1205 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
1206 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1207 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1208 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1209 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1210 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1211 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1212 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1213 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1214 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1215 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
1216 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1217 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
1218 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1219 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1220 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1221 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
1222 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1223 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1224 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
1225 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
1226 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
1227 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
1228 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
1229 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
1230 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1231 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1232 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1233 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1234 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1235 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
1236 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1237 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1238 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
1239 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
1240 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
1241 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
1242 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
1243 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
1244 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
1245 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
1246 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
1247 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
1248 | " |
---|
1249 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
1250 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59868_pyramid" |
---|
1251 | backOff = 5522 |
---|
1252 | pixelsID = 59868 |
---|
1253 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
1254 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
1255 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
1256 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
1257 | at java.lang.Class.newInstance0(Class.java:355) |
---|
1258 | at java.lang.Class.newInstance(Class.java:308) |
---|
1259 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
1260 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
1261 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
1262 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
1263 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
1264 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
1265 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
1266 | ... 10 more |
---|
1267 | Exception in thread "AWT-EventQueue-0" |
---|
1268 | |
---|
1269 | 2013-05-08 10:47:22,194 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1270 | Cannot start the Raw pixels store. |
---|
1271 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
1272 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
1273 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
1274 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
1275 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1276 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1277 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1278 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1279 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1280 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1281 | at java.lang.Thread.run(Thread.java:680) |
---|
1282 | Caused by: omero.MissingPyramidException |
---|
1283 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59863_pyramid |
---|
1284 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
1285 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
1286 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
1287 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
1288 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1289 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1290 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1291 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1292 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1293 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1294 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
1295 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1296 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
1297 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
1298 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1299 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
1300 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1301 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
1302 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1303 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
1304 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1305 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1306 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1307 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1308 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1309 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1310 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1311 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1312 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1313 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
1314 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1315 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
1316 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1317 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1318 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1319 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
1320 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1321 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1322 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
1323 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
1324 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
1325 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
1326 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
1327 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
1328 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1329 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1330 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1331 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1332 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1333 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
1334 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1335 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1336 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
1337 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
1338 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
1339 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
1340 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
1341 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
1342 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
1343 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
1344 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
1345 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
1346 | " |
---|
1347 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
1348 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59863_pyramid" |
---|
1349 | backOff = 4602 |
---|
1350 | pixelsID = 59863 |
---|
1351 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
1352 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
1353 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
1354 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
1355 | at java.lang.Class.newInstance0(Class.java:355) |
---|
1356 | at java.lang.Class.newInstance(Class.java:308) |
---|
1357 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
1358 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
1359 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
1360 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
1361 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
1362 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
1363 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
1364 | ... 9 more |
---|
1365 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1366 | Cannot start the Raw pixels store. |
---|
1367 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
1368 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
1369 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
1370 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
1371 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1372 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1373 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1374 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1375 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1376 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1377 | at java.lang.Thread.run(Thread.java:680) |
---|
1378 | Caused by: omero.MissingPyramidException |
---|
1379 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59863_pyramid |
---|
1380 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
1381 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
1382 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
1383 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
1384 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1385 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1386 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1387 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1388 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1389 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1390 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
1391 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1392 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
1393 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
1394 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1395 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
1396 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1397 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
1398 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1399 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
1400 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1401 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1402 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1403 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1404 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1405 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1406 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1407 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1408 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1409 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
1410 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1411 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
1412 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1413 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1414 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1415 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
1416 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1417 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1418 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
1419 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
1420 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
1421 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
1422 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
1423 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
1424 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1425 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1426 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1427 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1428 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1429 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
1430 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1431 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1432 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
1433 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
1434 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
1435 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
1436 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
1437 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
1438 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
1439 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
1440 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
1441 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
1442 | " |
---|
1443 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
1444 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59863_pyramid" |
---|
1445 | backOff = 4602 |
---|
1446 | pixelsID = 59863 |
---|
1447 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
1448 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
1449 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
1450 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
1451 | at java.lang.Class.newInstance0(Class.java:355) |
---|
1452 | at java.lang.Class.newInstance(Class.java:308) |
---|
1453 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
1454 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
1455 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
1456 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
1457 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
1458 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
1459 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
1460 | ... 9 more |
---|
1461 | Exception in thread "AWT-EventQueue-0" |
---|
1462 | |
---|
1463 | 2013-05-08 10:47:22,195 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1464 | Cannot start the Raw pixels store. |
---|
1465 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
1466 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
1467 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
1468 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
1469 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1470 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1471 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1472 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1473 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1474 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1475 | at java.lang.Thread.run(Thread.java:680) |
---|
1476 | Caused by: omero.MissingPyramidException |
---|
1477 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59863_pyramid |
---|
1478 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
1479 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
1480 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
1481 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
1482 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1483 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1484 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1485 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1486 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1487 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1488 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
1489 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1490 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
1491 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
1492 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1493 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
1494 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1495 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
1496 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1497 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
1498 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1499 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1500 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1501 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1502 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1503 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1504 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1505 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1506 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1507 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
1508 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1509 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
1510 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1511 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1512 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1513 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
1514 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1515 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1516 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
1517 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
1518 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
1519 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
1520 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
1521 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
1522 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1523 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1524 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1525 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1526 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1527 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
1528 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1529 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1530 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
1531 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
1532 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
1533 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
1534 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
1535 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
1536 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
1537 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
1538 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
1539 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
1540 | " |
---|
1541 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
1542 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59863_pyramid" |
---|
1543 | backOff = 4602 |
---|
1544 | pixelsID = 59863 |
---|
1545 | at sun.reflect.GeneratedConstructorAccessor25.newInstance(Unknown Source) |
---|
1546 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
1547 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
1548 | at java.lang.Class.newInstance0(Class.java:355) |
---|
1549 | at java.lang.Class.newInstance(Class.java:308) |
---|
1550 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
1551 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
1552 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
1553 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
1554 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
1555 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
1556 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
1557 | ... 9 more |
---|
1558 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1559 | Cannot start the Raw pixels store. |
---|
1560 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
1561 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
1562 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
1563 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
1564 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1565 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1566 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1567 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1568 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1569 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1570 | at java.lang.Thread.run(Thread.java:680) |
---|
1571 | Caused by: omero.MissingPyramidException |
---|
1572 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59863_pyramid |
---|
1573 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
1574 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
1575 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
1576 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
1577 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1578 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1579 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1580 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1581 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1582 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1583 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
1584 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1585 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
1586 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
1587 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1588 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
1589 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1590 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
1591 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1592 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
1593 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1594 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1595 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1596 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1597 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1598 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1599 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1600 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1601 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1602 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
1603 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1604 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
1605 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1606 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1607 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1608 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
1609 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1610 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1611 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
1612 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
1613 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
1614 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
1615 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
1616 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
1617 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1618 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1619 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1620 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1621 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1622 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
1623 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1624 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1625 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
1626 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
1627 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
1628 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
1629 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
1630 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
1631 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
1632 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
1633 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
1634 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
1635 | " |
---|
1636 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
1637 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59863_pyramid" |
---|
1638 | backOff = 4602 |
---|
1639 | pixelsID = 59863 |
---|
1640 | at sun.reflect.GeneratedConstructorAccessor25.newInstance(Unknown Source) |
---|
1641 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
1642 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
1643 | at java.lang.Class.newInstance0(Class.java:355) |
---|
1644 | at java.lang.Class.newInstance(Class.java:308) |
---|
1645 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
1646 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
1647 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
1648 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
1649 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
1650 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
1651 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
1652 | ... 9 more |
---|
1653 | Exception in thread "AWT-EventQueue-0" |
---|
1654 | |
---|
1655 | 2013-05-08 10:47:22,196 ERROR [a.agents.metadata.RenderingControlLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1656 | Cannot start the Raw pixels store. |
---|
1657 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
1658 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
1659 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getNumberOfRenderingEngines(OmeroImageServiceImpl.java:164) |
---|
1660 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:606) |
---|
1661 | at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97) |
---|
1662 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1663 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1664 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1665 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1666 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1667 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1668 | at java.lang.Thread.run(Thread.java:680) |
---|
1669 | Caused by: omero.MissingPyramidException |
---|
1670 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59863_pyramid |
---|
1671 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
1672 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
1673 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
1674 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
1675 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1676 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1677 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1678 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1679 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1680 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1681 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
1682 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1683 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
1684 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
1685 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1686 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
1687 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1688 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
1689 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1690 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
1691 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1692 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1693 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1694 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1695 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1696 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1697 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1698 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1699 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1700 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
1701 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1702 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
1703 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1704 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1705 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1706 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
1707 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1708 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1709 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
1710 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
1711 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
1712 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
1713 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
1714 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
1715 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1716 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1717 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1718 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1719 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1720 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
1721 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1722 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1723 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
1724 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
1725 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
1726 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
1727 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
1728 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
1729 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
1730 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
1731 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
1732 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
1733 | " |
---|
1734 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
1735 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59863_pyramid" |
---|
1736 | backOff = 4602 |
---|
1737 | pixelsID = 59863 |
---|
1738 | at sun.reflect.GeneratedConstructorAccessor25.newInstance(Unknown Source) |
---|
1739 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
1740 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
1741 | at java.lang.Class.newInstance0(Class.java:355) |
---|
1742 | at java.lang.Class.newInstance(Class.java:308) |
---|
1743 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
1744 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
1745 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
1746 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
1747 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
1748 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
1749 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
1750 | ... 10 more |
---|
1751 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1752 | Cannot start the Raw pixels store. |
---|
1753 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
1754 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
1755 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getNumberOfRenderingEngines(OmeroImageServiceImpl.java:164) |
---|
1756 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:606) |
---|
1757 | at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97) |
---|
1758 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1759 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1760 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1761 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1762 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1763 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1764 | at java.lang.Thread.run(Thread.java:680) |
---|
1765 | Caused by: omero.MissingPyramidException |
---|
1766 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59863_pyramid |
---|
1767 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
1768 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
1769 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
1770 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
1771 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1772 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1773 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1774 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1775 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1776 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1777 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
1778 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1779 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
1780 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
1781 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1782 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
1783 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1784 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
1785 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1786 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
1787 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1788 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1789 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1790 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1791 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1792 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1793 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1794 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1795 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1796 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
1797 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1798 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
1799 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1800 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1801 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1802 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
1803 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1804 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1805 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
1806 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
1807 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
1808 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
1809 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
1810 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
1811 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1812 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1813 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1814 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1815 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1816 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
1817 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1818 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1819 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
1820 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
1821 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
1822 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
1823 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
1824 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
1825 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
1826 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
1827 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
1828 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
1829 | " |
---|
1830 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
1831 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59863_pyramid" |
---|
1832 | backOff = 4602 |
---|
1833 | pixelsID = 59863 |
---|
1834 | at sun.reflect.GeneratedConstructorAccessor25.newInstance(Unknown Source) |
---|
1835 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
1836 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
1837 | at java.lang.Class.newInstance0(Class.java:355) |
---|
1838 | at java.lang.Class.newInstance(Class.java:308) |
---|
1839 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
1840 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
1841 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
1842 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
1843 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
1844 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
1845 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
1846 | ... 10 more |
---|
1847 | Exception in thread "AWT-EventQueue-0" |
---|
1848 | |
---|
1849 | 2013-05-08 10:47:41,218 INFO [ ome.formats.importer.ImportConfig] (Thread-301) OMERO Version: 4.4.8-47-0c111ca-ice33-b238 |
---|
1850 | 2013-05-08 10:47:41,218 INFO [ ome.formats.importer.ImportConfig] (Thread-301) Bioformats version: 4.4.9-DEV revision: 902a31e date: 8 May 2013 |
---|
1851 | 2013-05-08 10:47:41,223 INFO [ ome.formats.importer.ImportCandidates] (Thread-301) Depth: 4 Metadata Level: MINIMUM |
---|
1852 | 2013-05-08 10:47:41,290 INFO [ loci.formats.FormatHandler] (Thread-301) Populating metadata |
---|
1853 | 2013-05-08 10:47:41,406 INFO [ loci.formats.FormatHandler] (Thread-301) Populating metadata |
---|
1854 | 2013-05-08 10:47:41,468 INFO [ loci.formats.FormatHandler] (Thread-301) Populating metadata |
---|
1855 | 2013-05-08 10:47:41,524 INFO [ loci.formats.FormatHandler] (Thread-301) Populating metadata |
---|
1856 | 2013-05-08 10:47:41,574 INFO [ loci.formats.FormatHandler] (Thread-301) Populating metadata |
---|
1857 | 2013-05-08 10:47:41,635 INFO [ loci.formats.FormatHandler] (Thread-301) Populating metadata |
---|
1858 | 2013-05-08 10:47:41,691 INFO [ loci.formats.FormatHandler] (Thread-301) Populating metadata |
---|
1859 | 2013-05-08 10:47:42,100 INFO [ loci.formats.in.MinimalTiffReader] (Thread-301) Reading IFDs |
---|
1860 | 2013-05-08 10:47:42,447 INFO [ loci.formats.in.MinimalTiffReader] (Thread-301) Populating metadata |
---|
1861 | 2013-05-08 10:47:42,534 INFO [ loci.formats.in.BaseTiffReader] (Thread-301) Populating OME metadata |
---|
1862 | 2013-05-08 10:47:42,540 INFO [ ome.formats.importer.ImportCandidates] (Thread-301) 47 file(s) parsed into 1 group(s) with 8 call(s) to setId in 1251ms. (1317ms total) [0 unknowns] |
---|
1863 | 2013-05-08 10:47:42,623 INFO [ ome.formats.importer.ImportConfig] (Thread-301) OMERO Version: 4.4.8-47-0c111ca-ice33-b238 |
---|
1864 | 2013-05-08 10:47:42,624 INFO [ ome.formats.importer.ImportConfig] (Thread-301) Bioformats version: 4.4.9-DEV revision: 902a31e date: 8 May 2013 |
---|
1865 | 2013-05-08 10:47:44,271 INFO [ loci.formats.in.MinimalTiffReader] (Thread-301) Reading IFDs |
---|
1866 | 2013-05-08 10:47:44,376 INFO [ loci.formats.in.MinimalTiffReader] (Thread-301) Populating metadata |
---|
1867 | 2013-05-08 10:47:44,511 INFO [ loci.formats.in.BaseTiffReader] (Thread-301) Populating OME metadata |
---|
1868 | 2013-05-08 10:47:44,798 INFO [ ome.formats.importer.ImportLibrary] (Thread-301) File format: Trestle |
---|
1869 | 2013-05-08 10:47:44,798 INFO [ ome.formats.importer.ImportLibrary] (Thread-301) Base reader: loci.formats.in.TrestleReader |
---|
1870 | 2013-05-08 10:47:44,798 INFO [ ome.formats.importer.ImportLibrary] (Thread-301) Metadata only import? false |
---|
1871 | 2013-05-08 10:47:44,798 INFO [ ome.formats.importer.ImportLibrary] (Thread-301) Archiving enabled? false |
---|
1872 | 2013-05-08 10:47:44,798 INFO [ ome.formats.importer.ImportLibrary] (Thread-301) Container metadata only import? false |
---|
1873 | 2013-05-08 10:47:44,798 INFO [ ome.formats.importer.ImportLibrary] (Thread-301) Reader is not of HCS domain, use metafile: true |
---|
1874 | 2013-05-08 10:47:44,798 DEBUG [ omero.util.TempFileManager] (Thread-301) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT338756993477911028415d0ba4d-b0fe-40f2-a57f-6b0f7a1ea4c0 |
---|
1875 | 2013-05-08 10:47:44,802 DEBUG [ omero.util.TempFileManager] (Thread-301) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT78750126829139156972c576039-b170-4318-a093-17519b042549 |
---|
1876 | 2013-05-08 10:47:44,804 DEBUG [ omero.util.TempFileManager] (Thread-301) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT8365784775298483788d44be2d0-a748-4af8-82f3-f23242744662 |
---|
1877 | 2013-05-08 10:47:44,806 DEBUG [ omero.util.TempFileManager] (Thread-301) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT3996009398222068990ca15d39-2ca9-4227-a224-aae5b102930e |
---|
1878 | 2013-05-08 10:47:44,808 DEBUG [ omero.util.TempFileManager] (Thread-301) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT1739428598545111861e2705c48-86cf-4cfe-87fb-6889d1d34bf9 |
---|
1879 | 2013-05-08 10:47:44,810 DEBUG [ omero.util.TempFileManager] (Thread-301) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT37704224406894676680eba213e-027d-4691-b084-a9ad8951ff79 |
---|
1880 | 2013-05-08 10:47:44,812 DEBUG [ omero.util.TempFileManager] (Thread-301) Added file /Users/petr/omero/tmp/omero_petr/1047@ls25165.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT7061369522427993258117caef7-f8a9-482f-8741-53df385ba0b6 |
---|
1881 | 2013-05-08 10:47:44,820 WARN [ ome.formats.model.ReferenceProcessor] (Thread-301) Unknown target class for LSID: Image:2 |
---|
1882 | 2013-05-08 10:47:44,820 WARN [ ome.formats.model.ReferenceProcessor] (Thread-301) Unknown target class for LSID: Image:1 |
---|
1883 | 2013-05-08 10:47:44,820 WARN [ ome.formats.model.ReferenceProcessor] (Thread-301) Unknown target class for LSID: Image:0 |
---|
1884 | 2013-05-08 10:47:44,820 WARN [ ome.formats.model.ReferenceProcessor] (Thread-301) Unknown target class for LSID: Image:6 |
---|
1885 | 2013-05-08 10:47:44,820 WARN [ ome.formats.model.ReferenceProcessor] (Thread-301) Unknown target class for LSID: Image:5 |
---|
1886 | 2013-05-08 10:47:44,820 WARN [ ome.formats.model.ReferenceProcessor] (Thread-301) Unknown target class for LSID: Image:4 |
---|
1887 | 2013-05-08 10:47:44,820 WARN [ ome.formats.model.ReferenceProcessor] (Thread-301) Unknown target class for LSID: Image:3 |
---|
1888 | 2013-05-08 11:06:48,805 INFO [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 1060372480 |
---|
1889 | 2013-05-08 11:06:48,810 INFO [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.apple.laf.AquaLookAndFeel |
---|
1890 | 2013-05-08 11:06:57,101 INFO [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 5.0.0 |
---|
1891 | Client version: 5.0.0-alpha1-1397-c0efbfe-dirty-ice33-b258 |
---|
1892 | os_name: Mac OS X |
---|
1893 | os_arch: x86_64 |
---|
1894 | java_version: 1.6.0_35 |
---|
1895 | os_version: 10.8.2 |
---|
1896 | |
---|
1897 | 2013-05-08 11:06:57,575 INFO [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: gretzky.openmicroscopy.org.uk |
---|
1898 | User Name: user-4 -- Password: *** |
---|
1899 | |
---|
1900 | 2013-05-08 11:10:12,756 ERROR [opy.shoola.agents.imviewer.BirdEyeLoader] (entQueue-0) Bird Eye Retrieval Failure: java.lang.Exception: No data available. |
---|
1901 | 2013-05-08 11:10:45,854 ERROR [opy.shoola.agents.imviewer.BirdEyeLoader] (entQueue-0) Bird Eye Retrieval Failure: java.lang.Exception: No data available. |
---|
1902 | 2013-05-08 11:14:31,443 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1903 | Cannot start the Raw pixels store. |
---|
1904 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
1905 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
1906 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
1907 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
1908 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1909 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1910 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1911 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1912 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1913 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1914 | at java.lang.Thread.run(Thread.java:680) |
---|
1915 | Caused by: omero.MissingPyramidException |
---|
1916 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59866_pyramid |
---|
1917 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
1918 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
1919 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
1920 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
1921 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1922 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1923 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1924 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1925 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1926 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1927 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
1928 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1929 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
1930 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
1931 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1932 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
1933 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1934 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
1935 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1936 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
1937 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1938 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1939 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1940 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
1941 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1942 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1943 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1944 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1945 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1946 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
1947 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1948 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
1949 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1950 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1951 | at $Proxy88.setPixelsId(Unknown Source) |
---|
1952 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
1953 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1954 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1955 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
1956 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
1957 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
1958 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
1959 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
1960 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
1961 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
1962 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
1963 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
1964 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
1965 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
1966 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
1967 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
1968 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
1969 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
1970 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
1971 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
1972 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
1973 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
1974 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
1975 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
1976 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
1977 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
1978 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
1979 | " |
---|
1980 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
1981 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59866_pyramid" |
---|
1982 | backOff = 5522 |
---|
1983 | pixelsID = 59866 |
---|
1984 | at sun.reflect.GeneratedConstructorAccessor25.newInstance(Unknown Source) |
---|
1985 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
1986 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
1987 | at java.lang.Class.newInstance0(Class.java:355) |
---|
1988 | at java.lang.Class.newInstance(Class.java:308) |
---|
1989 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
1990 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
1991 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
1992 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
1993 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
1994 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
1995 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
1996 | ... 9 more |
---|
1997 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1998 | Cannot start the Raw pixels store. |
---|
1999 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
2000 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
2001 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
2002 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
2003 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
2004 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
2005 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
2006 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
2007 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
2008 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
2009 | at java.lang.Thread.run(Thread.java:680) |
---|
2010 | Caused by: omero.MissingPyramidException |
---|
2011 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59866_pyramid |
---|
2012 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
2013 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
2014 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
2015 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
2016 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2017 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2018 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2019 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2020 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2021 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2022 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
2023 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2024 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
2025 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
2026 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2027 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
2028 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2029 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
2030 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2031 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
2032 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2033 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2034 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2035 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2036 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2037 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2038 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2039 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2040 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2041 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
2042 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2043 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
2044 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2045 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2046 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2047 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
2048 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2049 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2050 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
2051 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
2052 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
2053 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
2054 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
2055 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
2056 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2057 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2058 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2059 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2060 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2061 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
2062 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2063 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2064 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
2065 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
2066 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
2067 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
2068 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
2069 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
2070 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
2071 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
2072 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
2073 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
2074 | " |
---|
2075 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
2076 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59866_pyramid" |
---|
2077 | backOff = 5522 |
---|
2078 | pixelsID = 59866 |
---|
2079 | at sun.reflect.GeneratedConstructorAccessor25.newInstance(Unknown Source) |
---|
2080 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
2081 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
2082 | at java.lang.Class.newInstance0(Class.java:355) |
---|
2083 | at java.lang.Class.newInstance(Class.java:308) |
---|
2084 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
2085 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
2086 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
2087 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
2088 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
2089 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
2090 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
2091 | ... 9 more |
---|
2092 | Exception in thread "AWT-EventQueue-0" |
---|
2093 | |
---|
2094 | 2013-05-08 11:14:32,382 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
2095 | Cannot start the Raw pixels store. |
---|
2096 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
2097 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
2098 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
2099 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
2100 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
2101 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
2102 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
2103 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
2104 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
2105 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
2106 | at java.lang.Thread.run(Thread.java:680) |
---|
2107 | Caused by: omero.MissingPyramidException |
---|
2108 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59877_pyramid |
---|
2109 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
2110 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
2111 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
2112 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
2113 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2114 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2115 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2116 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2117 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2118 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2119 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
2120 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2121 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
2122 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
2123 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2124 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
2125 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2126 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
2127 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2128 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
2129 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2130 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2131 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2132 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2133 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2134 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2135 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2136 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2137 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2138 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
2139 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2140 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
2141 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2142 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2143 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2144 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
2145 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2146 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2147 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
2148 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
2149 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
2150 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
2151 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
2152 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
2153 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2154 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2155 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2156 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2157 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2158 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
2159 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2160 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2161 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
2162 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
2163 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
2164 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
2165 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
2166 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
2167 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
2168 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
2169 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
2170 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
2171 | " |
---|
2172 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
2173 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59877_pyramid" |
---|
2174 | backOff = 1840 |
---|
2175 | pixelsID = 59877 |
---|
2176 | at sun.reflect.GeneratedConstructorAccessor25.newInstance(Unknown Source) |
---|
2177 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
2178 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
2179 | at java.lang.Class.newInstance0(Class.java:355) |
---|
2180 | at java.lang.Class.newInstance(Class.java:308) |
---|
2181 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
2182 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
2183 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
2184 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
2185 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
2186 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
2187 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
2188 | ... 9 more |
---|
2189 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
2190 | Cannot start the Raw pixels store. |
---|
2191 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
2192 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
2193 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
2194 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
2195 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
2196 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
2197 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
2198 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
2199 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
2200 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
2201 | at java.lang.Thread.run(Thread.java:680) |
---|
2202 | Caused by: omero.MissingPyramidException |
---|
2203 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59877_pyramid |
---|
2204 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
2205 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
2206 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
2207 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
2208 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2209 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2210 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2211 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2212 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2213 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2214 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
2215 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2216 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
2217 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
2218 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2219 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
2220 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2221 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
2222 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2223 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
2224 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2225 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2226 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2227 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2228 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2229 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2230 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2231 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2232 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2233 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
2234 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2235 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
2236 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2237 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2238 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2239 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
2240 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2241 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2242 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
2243 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
2244 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
2245 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
2246 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
2247 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
2248 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2249 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2250 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2251 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2252 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2253 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
2254 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2255 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2256 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
2257 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
2258 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
2259 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
2260 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
2261 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
2262 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
2263 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
2264 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
2265 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
2266 | " |
---|
2267 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
2268 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59877_pyramid" |
---|
2269 | backOff = 1840 |
---|
2270 | pixelsID = 59877 |
---|
2271 | at sun.reflect.GeneratedConstructorAccessor25.newInstance(Unknown Source) |
---|
2272 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
2273 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
2274 | at java.lang.Class.newInstance0(Class.java:355) |
---|
2275 | at java.lang.Class.newInstance(Class.java:308) |
---|
2276 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
2277 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
2278 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
2279 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
2280 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
2281 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
2282 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
2283 | ... 9 more |
---|
2284 | Exception in thread "AWT-EventQueue-0" |
---|
2285 | |
---|
2286 | 2013-05-08 11:14:32,655 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
2287 | Cannot start the Raw pixels store. |
---|
2288 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
2289 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
2290 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
2291 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
2292 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
2293 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
2294 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
2295 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
2296 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
2297 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
2298 | at java.lang.Thread.run(Thread.java:680) |
---|
2299 | Caused by: omero.MissingPyramidException |
---|
2300 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59877_pyramid |
---|
2301 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
2302 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
2303 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
2304 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
2305 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2306 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2307 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2308 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2309 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2310 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2311 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
2312 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2313 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
2314 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
2315 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2316 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
2317 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2318 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
2319 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2320 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
2321 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2322 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2323 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2324 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2325 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2326 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2327 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2328 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2329 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2330 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
2331 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2332 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
2333 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2334 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2335 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2336 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
2337 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2338 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2339 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
2340 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
2341 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
2342 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
2343 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
2344 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
2345 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2346 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2347 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2348 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2349 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2350 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
2351 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2352 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2353 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
2354 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
2355 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
2356 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
2357 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
2358 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
2359 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
2360 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
2361 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
2362 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
2363 | " |
---|
2364 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
2365 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59877_pyramid" |
---|
2366 | backOff = 1840 |
---|
2367 | pixelsID = 59877 |
---|
2368 | at sun.reflect.GeneratedConstructorAccessor25.newInstance(Unknown Source) |
---|
2369 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
2370 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
2371 | at java.lang.Class.newInstance0(Class.java:355) |
---|
2372 | at java.lang.Class.newInstance(Class.java:308) |
---|
2373 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
2374 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
2375 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
2376 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
2377 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
2378 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
2379 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
2380 | ... 9 more |
---|
2381 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
2382 | Cannot start the Raw pixels store. |
---|
2383 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
2384 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
2385 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
2386 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
2387 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
2388 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
2389 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
2390 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
2391 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
2392 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
2393 | at java.lang.Thread.run(Thread.java:680) |
---|
2394 | Caused by: omero.MissingPyramidException |
---|
2395 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59877_pyramid |
---|
2396 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
2397 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
2398 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
2399 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
2400 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2401 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2402 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2403 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2404 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2405 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2406 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
2407 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2408 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
2409 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
2410 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2411 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
2412 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2413 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
2414 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2415 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
2416 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2417 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2418 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2419 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2420 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2421 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2422 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2423 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2424 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2425 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
2426 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2427 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
2428 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2429 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2430 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2431 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
2432 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2433 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2434 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
2435 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
2436 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
2437 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
2438 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
2439 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
2440 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2441 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2442 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2443 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2444 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2445 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
2446 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2447 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2448 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
2449 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
2450 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
2451 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
2452 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
2453 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
2454 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
2455 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
2456 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
2457 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
2458 | " |
---|
2459 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
2460 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59877_pyramid" |
---|
2461 | backOff = 1840 |
---|
2462 | pixelsID = 59877 |
---|
2463 | at sun.reflect.GeneratedConstructorAccessor25.newInstance(Unknown Source) |
---|
2464 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
2465 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
2466 | at java.lang.Class.newInstance0(Class.java:355) |
---|
2467 | at java.lang.Class.newInstance(Class.java:308) |
---|
2468 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
2469 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
2470 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
2471 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
2472 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
2473 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
2474 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
2475 | ... 9 more |
---|
2476 | Exception in thread "AWT-EventQueue-0" |
---|
2477 | |
---|
2478 | 2013-05-08 11:14:32,657 ERROR [a.agents.metadata.RenderingControlLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
2479 | Cannot start the Raw pixels store. |
---|
2480 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
2481 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
2482 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getNumberOfRenderingEngines(OmeroImageServiceImpl.java:164) |
---|
2483 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:606) |
---|
2484 | at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97) |
---|
2485 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
2486 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
2487 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
2488 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
2489 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
2490 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
2491 | at java.lang.Thread.run(Thread.java:680) |
---|
2492 | Caused by: omero.MissingPyramidException |
---|
2493 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59877_pyramid |
---|
2494 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
2495 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
2496 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
2497 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
2498 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2499 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2500 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2501 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2502 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2503 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2504 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
2505 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2506 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
2507 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
2508 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2509 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
2510 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2511 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
2512 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2513 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
2514 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2515 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2516 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2517 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2518 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2519 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2520 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2521 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2522 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2523 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
2524 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2525 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
2526 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2527 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2528 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2529 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
2530 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2531 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2532 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
2533 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
2534 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
2535 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
2536 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
2537 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
2538 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2539 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2540 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2541 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2542 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2543 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
2544 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2545 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2546 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
2547 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
2548 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
2549 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
2550 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
2551 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
2552 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
2553 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
2554 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
2555 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
2556 | " |
---|
2557 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
2558 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59877_pyramid" |
---|
2559 | backOff = 1840 |
---|
2560 | pixelsID = 59877 |
---|
2561 | at sun.reflect.GeneratedConstructorAccessor25.newInstance(Unknown Source) |
---|
2562 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
2563 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
2564 | at java.lang.Class.newInstance0(Class.java:355) |
---|
2565 | at java.lang.Class.newInstance(Class.java:308) |
---|
2566 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
2567 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
2568 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
2569 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
2570 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
2571 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
2572 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
2573 | ... 10 more |
---|
2574 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
2575 | Cannot start the Raw pixels store. |
---|
2576 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
2577 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
2578 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getNumberOfRenderingEngines(OmeroImageServiceImpl.java:164) |
---|
2579 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:606) |
---|
2580 | at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97) |
---|
2581 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
2582 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
2583 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
2584 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
2585 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
2586 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
2587 | at java.lang.Thread.run(Thread.java:680) |
---|
2588 | Caused by: omero.MissingPyramidException |
---|
2589 | serverStackTrace = "ome.conditions.MissingPyramidException: Missing pyramid:/OMERO/Pixels/Dir-059/59877_pyramid |
---|
2590 | at ome.io.nio.SimpleBackOff.throwMissingPyramidException(SimpleBackOff.java:81) |
---|
2591 | at ome.io.nio.PixelsService.handleMissingPyramid(PixelsService.java:556) |
---|
2592 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:399) |
---|
2593 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
2594 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2595 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2596 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2597 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2598 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2599 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2600 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
2601 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2602 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
2603 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
2604 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2605 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
2606 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2607 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
2608 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2609 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
2610 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2611 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2612 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2613 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2614 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2615 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2616 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2617 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2618 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2619 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
2620 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2621 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
2622 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2623 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2624 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2625 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
2626 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2627 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2628 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
2629 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
2630 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
2631 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
2632 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
2633 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
2634 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2635 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2636 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2637 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2638 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2639 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
2640 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2641 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2642 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
2643 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
2644 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
2645 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
2646 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
2647 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
2648 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
2649 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
2650 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
2651 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
2652 | " |
---|
2653 | serverExceptionClass = "ome.conditions.MissingPyramidException" |
---|
2654 | message = "Missing pyramid:/OMERO/Pixels/Dir-059/59877_pyramid" |
---|
2655 | backOff = 1840 |
---|
2656 | pixelsID = 59877 |
---|
2657 | at sun.reflect.GeneratedConstructorAccessor25.newInstance(Unknown Source) |
---|
2658 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
2659 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
2660 | at java.lang.Class.newInstance0(Class.java:355) |
---|
2661 | at java.lang.Class.newInstance(Class.java:308) |
---|
2662 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
2663 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
2664 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
2665 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
2666 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
2667 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
2668 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
2669 | ... 10 more |
---|
2670 | Exception in thread "AWT-EventQueue-0" |
---|
2671 | |
---|
2672 | 2013-05-08 11:15:13,600 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
2673 | Cannot start the Raw pixels store. |
---|
2674 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
2675 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
2676 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
2677 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
2678 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
2679 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
2680 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
2681 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
2682 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
2683 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
2684 | at java.lang.Thread.run(Thread.java:680) |
---|
2685 | Caused by: omero.ResourceError |
---|
2686 | serverStackTrace = "ome.conditions.ResourceError: Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59881_pyramid |
---|
2687 | at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:645) |
---|
2688 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:410) |
---|
2689 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
2690 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2691 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2692 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2693 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2694 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2695 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2696 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
2697 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2698 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
2699 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
2700 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2701 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
2702 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2703 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
2704 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2705 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
2706 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2707 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2708 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2709 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2710 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2711 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2712 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2713 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2714 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2715 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
2716 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2717 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
2718 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2719 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2720 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2721 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
2722 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2723 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2724 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
2725 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
2726 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
2727 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
2728 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
2729 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
2730 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2731 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2732 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2733 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2734 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2735 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
2736 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2737 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2738 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
2739 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
2740 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
2741 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
2742 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
2743 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
2744 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
2745 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
2746 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
2747 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
2748 | " |
---|
2749 | serverExceptionClass = "ome.conditions.ResourceError" |
---|
2750 | message = "Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59881_pyramid" |
---|
2751 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
2752 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
2753 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
2754 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
2755 | at java.lang.Class.newInstance0(Class.java:355) |
---|
2756 | at java.lang.Class.newInstance(Class.java:308) |
---|
2757 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
2758 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
2759 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
2760 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
2761 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
2762 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
2763 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
2764 | ... 9 more |
---|
2765 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
2766 | Cannot start the Raw pixels store. |
---|
2767 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
2768 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
2769 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
2770 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
2771 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
2772 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
2773 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
2774 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
2775 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
2776 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
2777 | at java.lang.Thread.run(Thread.java:680) |
---|
2778 | Caused by: omero.ResourceError |
---|
2779 | serverStackTrace = "ome.conditions.ResourceError: Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59881_pyramid |
---|
2780 | at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:645) |
---|
2781 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:410) |
---|
2782 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
2783 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2784 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2785 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2786 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2787 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2788 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2789 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
2790 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2791 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
2792 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
2793 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2794 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
2795 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2796 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
2797 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2798 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
2799 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2800 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2801 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2802 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2803 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2804 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2805 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2806 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2807 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2808 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
2809 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2810 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
2811 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2812 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2813 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2814 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
2815 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2816 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2817 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
2818 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
2819 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
2820 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
2821 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
2822 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
2823 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2824 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2825 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2826 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2827 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2828 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
2829 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2830 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2831 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
2832 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
2833 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
2834 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
2835 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
2836 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
2837 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
2838 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
2839 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
2840 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
2841 | " |
---|
2842 | serverExceptionClass = "ome.conditions.ResourceError" |
---|
2843 | message = "Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59881_pyramid" |
---|
2844 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
2845 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
2846 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
2847 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
2848 | at java.lang.Class.newInstance0(Class.java:355) |
---|
2849 | at java.lang.Class.newInstance(Class.java:308) |
---|
2850 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
2851 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
2852 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
2853 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
2854 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
2855 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
2856 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
2857 | ... 9 more |
---|
2858 | Exception in thread "AWT-EventQueue-0" |
---|
2859 | |
---|
2860 | 2013-05-08 11:15:13,605 ERROR [a.agents.metadata.RenderingControlLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
2861 | Cannot start the Raw pixels store. |
---|
2862 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
2863 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
2864 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getNumberOfRenderingEngines(OmeroImageServiceImpl.java:164) |
---|
2865 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:606) |
---|
2866 | at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97) |
---|
2867 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
2868 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
2869 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
2870 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
2871 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
2872 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
2873 | at java.lang.Thread.run(Thread.java:680) |
---|
2874 | Caused by: omero.ResourceError |
---|
2875 | serverStackTrace = "ome.conditions.ResourceError: Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59881_pyramid |
---|
2876 | at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:645) |
---|
2877 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:410) |
---|
2878 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
2879 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2880 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2881 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2882 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2883 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2884 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2885 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
2886 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2887 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
2888 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
2889 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2890 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
2891 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2892 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
2893 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2894 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
2895 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2896 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2897 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2898 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2899 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2900 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2901 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2902 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2903 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2904 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
2905 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2906 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
2907 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2908 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2909 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2910 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
2911 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2912 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2913 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
2914 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
2915 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
2916 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
2917 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
2918 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
2919 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2920 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2921 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2922 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2923 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2924 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
2925 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2926 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2927 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
2928 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
2929 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
2930 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
2931 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
2932 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
2933 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
2934 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
2935 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
2936 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
2937 | " |
---|
2938 | serverExceptionClass = "ome.conditions.ResourceError" |
---|
2939 | message = "Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59881_pyramid" |
---|
2940 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
2941 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
2942 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
2943 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
2944 | at java.lang.Class.newInstance0(Class.java:355) |
---|
2945 | at java.lang.Class.newInstance(Class.java:308) |
---|
2946 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
2947 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
2948 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
2949 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
2950 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
2951 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
2952 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
2953 | ... 10 more |
---|
2954 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
2955 | Cannot start the Raw pixels store. |
---|
2956 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
2957 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
2958 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getNumberOfRenderingEngines(OmeroImageServiceImpl.java:164) |
---|
2959 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:606) |
---|
2960 | at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97) |
---|
2961 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
2962 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
2963 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
2964 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
2965 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
2966 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
2967 | at java.lang.Thread.run(Thread.java:680) |
---|
2968 | Caused by: omero.ResourceError |
---|
2969 | serverStackTrace = "ome.conditions.ResourceError: Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59881_pyramid |
---|
2970 | at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:645) |
---|
2971 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:410) |
---|
2972 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
2973 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2974 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2975 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2976 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2977 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2978 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2979 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
2980 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2981 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
2982 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
2983 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2984 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
2985 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2986 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
2987 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2988 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
2989 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
2990 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
2991 | at $Proxy88.setPixelsId(Unknown Source) |
---|
2992 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
2993 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
2994 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
2995 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
2996 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
2997 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
2998 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
2999 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3000 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
3001 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3002 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3003 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3004 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
3005 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3006 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3007 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
3008 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
3009 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
3010 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
3011 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
3012 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
3013 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3014 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3015 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3016 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3017 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3018 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
3019 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3020 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3021 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
3022 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
3023 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
3024 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
3025 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
3026 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
3027 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
3028 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
3029 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
3030 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
3031 | " |
---|
3032 | serverExceptionClass = "ome.conditions.ResourceError" |
---|
3033 | message = "Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59881_pyramid" |
---|
3034 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
3035 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
3036 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
3037 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
3038 | at java.lang.Class.newInstance0(Class.java:355) |
---|
3039 | at java.lang.Class.newInstance(Class.java:308) |
---|
3040 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
3041 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
3042 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
3043 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
3044 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
3045 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
3046 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
3047 | ... 10 more |
---|
3048 | Exception in thread "AWT-EventQueue-0" |
---|
3049 | |
---|
3050 | 2013-05-08 11:15:15,704 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
3051 | Cannot start the Raw pixels store. |
---|
3052 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
3053 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
3054 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
3055 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
3056 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
3057 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
3058 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
3059 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
3060 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
3061 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
3062 | at java.lang.Thread.run(Thread.java:680) |
---|
3063 | Caused by: omero.ResourceError |
---|
3064 | serverStackTrace = "ome.conditions.ResourceError: Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59880_pyramid |
---|
3065 | at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:645) |
---|
3066 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:410) |
---|
3067 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
3068 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
3069 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3070 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3071 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3072 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3073 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3074 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
3075 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3076 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
3077 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
3078 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3079 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
3080 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3081 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
3082 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3083 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
3084 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3085 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3086 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3087 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
3088 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3089 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3090 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3091 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3092 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3093 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
3094 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3095 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
3096 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3097 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3098 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3099 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
3100 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3101 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3102 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
3103 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
3104 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
3105 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
3106 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
3107 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
3108 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3109 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3110 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3111 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3112 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3113 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
3114 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3115 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3116 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
3117 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
3118 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
3119 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
3120 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
3121 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
3122 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
3123 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
3124 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
3125 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
3126 | " |
---|
3127 | serverExceptionClass = "ome.conditions.ResourceError" |
---|
3128 | message = "Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59880_pyramid" |
---|
3129 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
3130 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
3131 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
3132 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
3133 | at java.lang.Class.newInstance0(Class.java:355) |
---|
3134 | at java.lang.Class.newInstance(Class.java:308) |
---|
3135 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
3136 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
3137 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
3138 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
3139 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
3140 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
3141 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
3142 | ... 9 more |
---|
3143 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
3144 | Cannot start the Raw pixels store. |
---|
3145 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
3146 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
3147 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
3148 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
3149 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
3150 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
3151 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
3152 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
3153 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
3154 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
3155 | at java.lang.Thread.run(Thread.java:680) |
---|
3156 | Caused by: omero.ResourceError |
---|
3157 | serverStackTrace = "ome.conditions.ResourceError: Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59880_pyramid |
---|
3158 | at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:645) |
---|
3159 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:410) |
---|
3160 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
3161 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
3162 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3163 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3164 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3165 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3166 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3167 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
3168 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3169 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
3170 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
3171 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3172 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
3173 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3174 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
3175 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3176 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
3177 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3178 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3179 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3180 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
3181 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3182 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3183 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3184 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3185 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3186 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
3187 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3188 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
3189 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3190 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3191 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3192 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
3193 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3194 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3195 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
3196 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
3197 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
3198 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
3199 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
3200 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
3201 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3202 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3203 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3204 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3205 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3206 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
3207 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3208 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3209 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
3210 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
3211 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
3212 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
3213 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
3214 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
3215 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
3216 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
3217 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
3218 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
3219 | " |
---|
3220 | serverExceptionClass = "ome.conditions.ResourceError" |
---|
3221 | message = "Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59880_pyramid" |
---|
3222 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
3223 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
3224 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
3225 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
3226 | at java.lang.Class.newInstance0(Class.java:355) |
---|
3227 | at java.lang.Class.newInstance(Class.java:308) |
---|
3228 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
3229 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
3230 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
3231 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
3232 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
3233 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
3234 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
3235 | ... 9 more |
---|
3236 | Exception in thread "AWT-EventQueue-0" |
---|
3237 | |
---|
3238 | 2013-05-08 11:15:15,705 ERROR [a.agents.metadata.RenderingControlLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
3239 | Cannot start the Raw pixels store. |
---|
3240 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
3241 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
3242 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getNumberOfRenderingEngines(OmeroImageServiceImpl.java:164) |
---|
3243 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:606) |
---|
3244 | at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97) |
---|
3245 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
3246 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
3247 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
3248 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
3249 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
3250 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
3251 | at java.lang.Thread.run(Thread.java:680) |
---|
3252 | Caused by: omero.ResourceError |
---|
3253 | serverStackTrace = "ome.conditions.ResourceError: Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59880_pyramid |
---|
3254 | at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:645) |
---|
3255 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:410) |
---|
3256 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
3257 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
3258 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3259 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3260 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3261 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3262 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3263 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
3264 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3265 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
3266 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
3267 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3268 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
3269 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3270 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
3271 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3272 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
3273 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3274 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3275 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3276 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
3277 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3278 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3279 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3280 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3281 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3282 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
3283 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3284 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
3285 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3286 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3287 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3288 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
3289 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3290 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3291 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
3292 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
3293 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
3294 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
3295 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
3296 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
3297 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3298 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3299 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3300 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3301 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3302 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
3303 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3304 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3305 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
3306 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
3307 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
3308 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
3309 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
3310 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
3311 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
3312 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
3313 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
3314 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
3315 | " |
---|
3316 | serverExceptionClass = "ome.conditions.ResourceError" |
---|
3317 | message = "Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59880_pyramid" |
---|
3318 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
3319 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
3320 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
3321 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
3322 | at java.lang.Class.newInstance0(Class.java:355) |
---|
3323 | at java.lang.Class.newInstance(Class.java:308) |
---|
3324 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
3325 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
3326 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
3327 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
3328 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
3329 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
3330 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
3331 | ... 10 more |
---|
3332 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
3333 | Cannot start the Raw pixels store. |
---|
3334 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
3335 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
3336 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getNumberOfRenderingEngines(OmeroImageServiceImpl.java:164) |
---|
3337 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:606) |
---|
3338 | at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97) |
---|
3339 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
3340 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
3341 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
3342 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
3343 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
3344 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
3345 | at java.lang.Thread.run(Thread.java:680) |
---|
3346 | Caused by: omero.ResourceError |
---|
3347 | serverStackTrace = "ome.conditions.ResourceError: Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59880_pyramid |
---|
3348 | at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:645) |
---|
3349 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:410) |
---|
3350 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
3351 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
3352 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3353 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3354 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3355 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3356 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3357 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
3358 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3359 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
3360 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
3361 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3362 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
3363 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3364 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
3365 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3366 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
3367 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3368 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3369 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3370 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
3371 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3372 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3373 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3374 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3375 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3376 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
3377 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3378 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
3379 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3380 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3381 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3382 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
3383 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3384 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3385 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
3386 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
3387 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
3388 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
3389 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
3390 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
3391 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3392 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3393 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3394 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3395 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3396 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
3397 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3398 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3399 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
3400 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
3401 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
3402 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
3403 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
3404 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
3405 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
3406 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
3407 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
3408 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
3409 | " |
---|
3410 | serverExceptionClass = "ome.conditions.ResourceError" |
---|
3411 | message = "Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59880_pyramid" |
---|
3412 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
3413 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
3414 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
3415 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
3416 | at java.lang.Class.newInstance0(Class.java:355) |
---|
3417 | at java.lang.Class.newInstance(Class.java:308) |
---|
3418 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
3419 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
3420 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
3421 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
3422 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
3423 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
3424 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
3425 | ... 10 more |
---|
3426 | Exception in thread "AWT-EventQueue-0" |
---|
3427 | |
---|
3428 | 2013-05-08 11:15:17,851 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
3429 | Cannot start the Raw pixels store. |
---|
3430 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
3431 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
3432 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
3433 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
3434 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
3435 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
3436 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
3437 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
3438 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
3439 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
3440 | at java.lang.Thread.run(Thread.java:680) |
---|
3441 | Caused by: omero.ResourceError |
---|
3442 | serverStackTrace = "ome.conditions.ResourceError: Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59879_pyramid |
---|
3443 | at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:645) |
---|
3444 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:410) |
---|
3445 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
3446 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
3447 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3448 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3449 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3450 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3451 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3452 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
3453 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3454 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
3455 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
3456 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3457 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
3458 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3459 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
3460 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3461 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
3462 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3463 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3464 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3465 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
3466 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3467 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3468 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3469 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3470 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3471 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
3472 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3473 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
3474 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3475 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3476 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3477 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
3478 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3479 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3480 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
3481 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
3482 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
3483 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
3484 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
3485 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
3486 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3487 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3488 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3489 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3490 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3491 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
3492 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3493 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3494 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
3495 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
3496 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
3497 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
3498 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
3499 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
3500 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
3501 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
3502 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
3503 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
3504 | " |
---|
3505 | serverExceptionClass = "ome.conditions.ResourceError" |
---|
3506 | message = "Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59879_pyramid" |
---|
3507 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
3508 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
3509 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
3510 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
3511 | at java.lang.Class.newInstance0(Class.java:355) |
---|
3512 | at java.lang.Class.newInstance(Class.java:308) |
---|
3513 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
3514 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
3515 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
3516 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
3517 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
3518 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
3519 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
3520 | ... 9 more |
---|
3521 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
3522 | Cannot start the Raw pixels store. |
---|
3523 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
3524 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
3525 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1991) |
---|
3526 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
3527 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
3528 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
3529 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
3530 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
3531 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
3532 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
3533 | at java.lang.Thread.run(Thread.java:680) |
---|
3534 | Caused by: omero.ResourceError |
---|
3535 | serverStackTrace = "ome.conditions.ResourceError: Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59879_pyramid |
---|
3536 | at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:645) |
---|
3537 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:410) |
---|
3538 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
3539 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
3540 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3541 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3542 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3543 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3544 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3545 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
3546 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3547 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
3548 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
3549 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3550 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
3551 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3552 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
3553 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3554 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
3555 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3556 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3557 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3558 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
3559 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3560 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3561 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3562 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3563 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3564 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
3565 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3566 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
3567 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3568 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3569 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3570 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
3571 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3572 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3573 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
3574 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
3575 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
3576 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
3577 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
3578 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
3579 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3580 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3581 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3582 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3583 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3584 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
3585 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3586 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3587 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
3588 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
3589 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
3590 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
3591 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
3592 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
3593 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
3594 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
3595 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
3596 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
3597 | " |
---|
3598 | serverExceptionClass = "ome.conditions.ResourceError" |
---|
3599 | message = "Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59879_pyramid" |
---|
3600 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
3601 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
3602 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
3603 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
3604 | at java.lang.Class.newInstance0(Class.java:355) |
---|
3605 | at java.lang.Class.newInstance(Class.java:308) |
---|
3606 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
3607 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
3608 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
3609 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
3610 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
3611 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
3612 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
3613 | ... 9 more |
---|
3614 | Exception in thread "AWT-EventQueue-0" |
---|
3615 | |
---|
3616 | 2013-05-08 11:15:17,854 ERROR [a.agents.metadata.RenderingControlLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
3617 | Cannot start the Raw pixels store. |
---|
3618 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
3619 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
3620 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getNumberOfRenderingEngines(OmeroImageServiceImpl.java:164) |
---|
3621 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:606) |
---|
3622 | at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97) |
---|
3623 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
3624 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
3625 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
3626 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
3627 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
3628 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
3629 | at java.lang.Thread.run(Thread.java:680) |
---|
3630 | Caused by: omero.ResourceError |
---|
3631 | serverStackTrace = "ome.conditions.ResourceError: Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59879_pyramid |
---|
3632 | at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:645) |
---|
3633 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:410) |
---|
3634 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
3635 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
3636 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3637 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3638 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3639 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3640 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3641 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
3642 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3643 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
3644 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
3645 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3646 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
3647 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3648 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
3649 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3650 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
3651 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3652 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3653 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3654 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
3655 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3656 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3657 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3658 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3659 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3660 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
3661 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3662 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
3663 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3664 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3665 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3666 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
3667 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3668 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3669 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
3670 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
3671 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
3672 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
3673 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
3674 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
3675 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3676 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3677 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3678 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3679 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3680 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
3681 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3682 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3683 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
3684 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
3685 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
3686 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
3687 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
3688 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
3689 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
3690 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
3691 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
3692 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
3693 | " |
---|
3694 | serverExceptionClass = "ome.conditions.ResourceError" |
---|
3695 | message = "Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59879_pyramid" |
---|
3696 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
3697 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
3698 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
3699 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
3700 | at java.lang.Class.newInstance0(Class.java:355) |
---|
3701 | at java.lang.Class.newInstance(Class.java:308) |
---|
3702 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
3703 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
3704 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
3705 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
3706 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
3707 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
3708 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
3709 | ... 10 more |
---|
3710 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
3711 | Cannot start the Raw pixels store. |
---|
3712 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:902) |
---|
3713 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8361) |
---|
3714 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.getNumberOfRenderingEngines(OmeroImageServiceImpl.java:164) |
---|
3715 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:606) |
---|
3716 | at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97) |
---|
3717 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
3718 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
3719 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
3720 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
3721 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
3722 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
3723 | at java.lang.Thread.run(Thread.java:680) |
---|
3724 | Caused by: omero.ResourceError |
---|
3725 | serverStackTrace = "ome.conditions.ResourceError: Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59879_pyramid |
---|
3726 | at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:645) |
---|
3727 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:410) |
---|
3728 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280) |
---|
3729 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
3730 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3731 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3732 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3733 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3734 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3735 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
3736 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3737 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
---|
3738 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
---|
3739 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3740 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
3741 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3742 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
3743 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3744 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
3745 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3746 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3747 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3748 | at sun.reflect.GeneratedMethodAccessor929.invoke(Unknown Source) |
---|
3749 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3750 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3751 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3752 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3753 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3754 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
3755 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3756 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
3757 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3758 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3759 | at $Proxy88.setPixelsId(Unknown Source) |
---|
3760 | at sun.reflect.GeneratedMethodAccessor982.invoke(Unknown Source) |
---|
3761 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3762 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3763 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
3764 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
3765 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
3766 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:150) |
---|
3767 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:193) |
---|
3768 | at sun.reflect.GeneratedMethodAccessor981.invoke(Unknown Source) |
---|
3769 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
---|
3770 | at java.lang.reflect.Method.invoke(Method.java:592) |
---|
3771 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
3772 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
3773 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
3774 | at omero.cmd.CallContext.invoke(CallContext.java:59) |
---|
3775 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
3776 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
3777 | at $Proxy90.setPixelsId_async(Unknown Source) |
---|
3778 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:274) |
---|
3779 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:375) |
---|
3780 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1297) |
---|
3781 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
3782 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
---|
3783 | at Ice.ConnectionI.message(ConnectionI.java:972) |
---|
3784 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
---|
3785 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
---|
3786 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
---|
3787 | " |
---|
3788 | serverExceptionClass = "ome.conditions.ResourceError" |
---|
3789 | message = "Error instantiating pixel buffer: /OMERO/Pixels/Dir-059/59879_pyramid" |
---|
3790 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
3791 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
---|
3792 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
---|
3793 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
---|
3794 | at java.lang.Class.newInstance0(Class.java:355) |
---|
3795 | at java.lang.Class.newInstance(Class.java:308) |
---|
3796 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
---|
3797 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
---|
3798 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
---|
3799 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1515) |
---|
3800 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2090) |
---|
3801 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2062) |
---|
3802 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8356) |
---|
3803 | ... 10 more |
---|
3804 | Exception in thread "AWT-EventQueue-0" |
---|
3805 | |
---|
3806 | 2013-05-08 11:15:20,203 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|