1 | <?xml version="1.0" encoding="UTF-8"?> |
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2 | <OME xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06" |
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3 | xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" |
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4 | xmlns:ROI="http://www.openmicroscopy.org/Schemas/ROI/2012-06" |
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5 | xmlns:SA="http://www.openmicroscopy.org/Schemas/SA/2012-06" |
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6 | xmlns:SPW="http://www.openmicroscopy.org/Schemas/SPW/2012-06" |
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7 | xmlns:Bin="http://www.openmicroscopy.org/Schemas/BinaryFile/2012-06" |
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8 | xmlns:OME="http://www.openmicroscopy.org/Schemas/OME/2012-06" |
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9 | xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/OME/2012-06 |
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10 | http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd"> |
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11 | |
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12 | <OME:Project ID="Project:0"> |
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13 | <OME:DatasetRef ID="Dataset:0"/> |
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14 | <SA:AnnotationRef ID="Annotation:0"/> |
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15 | </OME:Project> |
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16 | <OME:Dataset ID="Dataset:0"> |
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17 | <OME:ImageRef ID="Image:0"/> |
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18 | <SA:AnnotationRef ID="Annotation:1"/> |
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19 | </OME:Dataset> |
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20 | <SPW:Plate ID="Plate:0"> |
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21 | <SPW:Description>Plate 0 Description</SPW:Description> |
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22 | <SPW:Well ID="Well:0" Column="1" Row="1" Color="-2147483648" Type="TheWell0Status"> |
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23 | <SPW:WellSample ID="WellSample:0" Index="1"> |
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24 | <OME:ImageRef ID="Image:0"/> |
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25 | </SPW:WellSample> |
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26 | </SPW:Well> |
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27 | <SA:AnnotationRef ID="Annotation:0"/> |
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28 | <SPW:PlateAcquisition ID="PlateAcquisition:0"> |
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29 | <SPW:Description>Plate Acquisition 0 Description</SPW:Description> |
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30 | <SA:AnnotationRef ID="Annotation:1"/> |
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31 | </SPW:PlateAcquisition> |
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32 | </SPW:Plate> |
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33 | <SPW:Plate ID="Plate:1"/> |
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34 | <SPW:Screen ID="Screen:0" Name="ScreenName0" ProtocolDescription="Protocol Description Test0" |
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35 | ProtocolIdentifier="ProtocolTest0ID" ReagentSetDescription="Reagents Set XYZ" |
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36 | ReagentSetIdentifier="ReagentsXYZ-ID" Type="ScreenType0"> |
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37 | <SPW:Description>Screen 0 Description</SPW:Description> |
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38 | <SPW:Reagent ID="Reagent:0"/> |
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39 | <SPW:PlateRef ID="Plate:0"/> |
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40 | <SA:AnnotationRef ID="Annotation:1"/> |
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41 | </SPW:Screen> |
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42 | |
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43 | <SPW:Screen ID="Screen:1" Name="ScreenName1" ProtocolDescription="Protocol Description Test1" |
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44 | ProtocolIdentifier="ProtocolTest1ID" ReagentSetDescription="Reagents Set PQR" |
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45 | ReagentSetIdentifier="ReagentsPQR-ID" Type="ScreenType1"> |
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46 | <SPW:Description>Screen 1 Description</SPW:Description> |
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47 | <SPW:Reagent ID="Reagent:1"/> |
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48 | <SPW:PlateRef ID="Plate:1"/> |
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49 | <SPW:PlateRef ID="Plate:0"/> |
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50 | <SA:AnnotationRef ID="Annotation:1"/> |
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51 | </SPW:Screen> |
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52 | |
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53 | <SPW:Screen ID="Screen:2" Name="ScreenName2" ProtocolDescription="Protocol Description Test2" |
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54 | ProtocolIdentifier="ProtocolTest2ID" ReagentSetDescription="Reagents Set IJK" |
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55 | ReagentSetIdentifier="ReagentsIJK-ID" Type="ScreenType2"> |
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56 | <SPW:Description>Screen 2 Description</SPW:Description> |
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57 | <SPW:Reagent ID="Reagent:2"/> |
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58 | <SA:AnnotationRef ID="Annotation:1"/> |
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59 | </SPW:Screen> |
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60 | |
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61 | <SPW:Screen ID="Screen:3" Name="ScreenName3" ProtocolDescription="Protocol Description Test3" |
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62 | ProtocolIdentifier="ProtocolTest3ID" ReagentSetDescription="Reagents Set AJP" |
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63 | ReagentSetIdentifier="ReagentsAJP-ID" Type="ScreenType3"> |
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64 | <SPW:Description>Screen 3 Description</SPW:Description> |
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65 | <SPW:Reagent ID="Reagent:3"/> |
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66 | <SPW:PlateRef ID="Plate:0"/> |
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67 | <SA:AnnotationRef ID="Annotation:1"/> |
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68 | </SPW:Screen> |
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69 | |
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70 | <OME:Experimenter ID="Experimenter:0"/> |
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71 | <OME:Experimenter ID="Experimenter:1" FirstName="John" MiddleName="Andrew" LastName="Smith" |
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72 | Email="john@example.org"> </OME:Experimenter> |
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73 | <OME:Experimenter ID="Experimenter:2"/> |
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74 | <OME:Experimenter ID="Experimenter:3"/> |
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75 | <OME:Experimenter ID="Experimenter:4"/> |
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76 | <OME:Experimenter ID="Experimenter:5"/> |
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77 | <OME:Experimenter ID="Experimenter:6"/> |
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78 | |
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79 | <OME:ExperimenterGroup Name="MyGroup - Leader+Contact match" ID="ExperimenterGroup:Group:0"> |
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80 | <Description>A description for my group 0. |
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81 | Complete with basic formatting, like new lines.</Description> |
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82 | <OME:ExperimenterRef ID="Experimenter:5"/> |
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83 | <Leader ID="Experimenter:0"/> |
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84 | </OME:ExperimenterGroup> |
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85 | |
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86 | <OME:ExperimenterGroup Name="MyOtherGroup" ID="ExperimenterGroup:Group:1"> |
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87 | <Description>A description for my group 1. |
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88 | Complete with basic formatting, like new lines.</Description> |
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89 | <OME:ExperimenterRef ID="Experimenter:2"/> |
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90 | <OME:ExperimenterRef ID="Experimenter:3"/> |
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91 | <Leader ID="Experimenter:0"/> |
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92 | <OME:Leader ID="Experimenter:1"/> |
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93 | </OME:ExperimenterGroup> |
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94 | |
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95 | <OME:ExperimenterGroup Name="NoMatch" ID="ExperimenterGroup:Group:2"> |
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96 | <Description>A description for my group 2. |
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97 | Complete with basic formatting, like new lines.</Description> |
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98 | <OME:ExperimenterRef ID="Experimenter:4"/> |
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99 | <Leader ID="Experimenter:6"/> |
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100 | </OME:ExperimenterGroup> |
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101 | |
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102 | <OME:ExperimenterGroup Name="LeaderMatch" ID="ExperimenterGroup:Group:3"> |
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103 | <Description>A description for my group 3. |
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104 | Complete with basic formatting, like new lines.</Description> |
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105 | <Leader ID="Experimenter:0"/> |
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106 | </OME:ExperimenterGroup> |
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107 | <OME:ExperimenterGroup Name="ContactMatch" ID="ExperimenterGroup:Group:4"> |
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108 | <Description>A description for my group 4. |
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109 | Complete with basic formatting, like new lines.</Description> |
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110 | <OME:Leader ID="Experimenter:0"/> |
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111 | </OME:ExperimenterGroup> |
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112 | <Instrument ID="Instrument:0"> |
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113 | <Microscope Type="Inverted" Manufacturer="OME Insturuments" Model="Lab Mk3" SerialNumber="L3-1234"/> |
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114 | <LightSource ID="LightSource:0" Power="200" Manufacturer="OME Lights" Model="Ruby60" SerialNumber="A654321"> |
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115 | <Laser Type="SolidState" LaserMedium="Ruby"> |
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116 | <Pump ID="LightSource:1"/> |
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117 | </Laser> |
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118 | </LightSource> |
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119 | <LightSource ID="LightSource:1" Power="300" Manufacturer="OME Lights" Model="Arc60" SerialNumber="A123456"> |
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120 | <Arc Type="Xe"/> |
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121 | </LightSource> |
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122 | <Detector ID="Detector:0" Type="CCD" Manufacturer="OME Detectors" Model="Standard CCD Mk2"/> |
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123 | <Objective Correction="UV" Immersion="Air" LensNA="1.2" NominalMagnification="60" CalibratedMagnification="60.12" WorkingDistance="20" ID="Objective:0" Manufacturer="OME Objectives" Model="60xUV-Air"/> |
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124 | <FilterSet ID="FilterSet:0" Manufacturer="OME Filters" Model="Standard Mk3" LotNumber="Lot174-A"> |
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125 | <ExcitationFilterRef ID="Filter:0"/> |
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126 | <DichroicRef ID="Dichroic:0"/> |
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127 | <EmissionFilterRef ID="Filter:1"/> |
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128 | </FilterSet> |
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129 | <Filter ID="Filter:0" Manufacturer="OME Filters" Model="Model1" FilterWheel="Disc A"> |
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130 | <TransmittanceRange CutIn="350" CutOut="450" CutInTolerance="10" CutOutTolerance="20" Transmittance="0.3"/> |
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131 | </Filter> |
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132 | <Filter ID="Filter:1" Manufacturer="OME Filters" Model="Delux Mk4" Type="BandPass"> |
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133 | <TransmittanceRange CutIn="560" CutOut="630" CutInTolerance="25" CutOutTolerance="30" Transmittance="0.8"/> |
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134 | </Filter> |
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135 | <Filter ID="Filter:2" Manufacturer="OME Filters" Model="Delux Mk5" Type="BandPass"> |
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136 | <TransmittanceRange CutIn="562" CutOut="633" CutInTolerance="11" CutOutTolerance="23" Transmittance="0.5"/> |
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137 | </Filter> |
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138 | <Filter ID="Filter:3" Manufacturer="OME Filters" Model="Delux Mk6" Type="BandPass"> |
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139 | <TransmittanceRange CutIn="463" CutOut="535" CutInTolerance="21" CutOutTolerance="34" Transmittance="0.7"/> |
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140 | </Filter> |
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141 | <Dichroic ID="Dichroic:0" Model="Standard Mk3" Manufacturer="OME Insturuments"/> |
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142 | </Instrument> |
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143 | |
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144 | <OME:Image ID="Image:0" Name="6x6x1x8-swatch.tif"> |
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145 | <OME:AcquisitionDate>2010-02-23T12:51:30</OME:AcquisitionDate> |
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146 | <ExperimenterRef ID="Experimenter:1"/> |
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147 | <Pixels DimensionOrder="XYCZT" ID="Pixels:0:0" PhysicalSizeX="10000.0" |
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148 | PhysicalSizeY="10000.0" Type="uint8" SizeC="3" SizeT="1" SizeX="6" SizeY="4" SizeZ="1"> |
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149 | <Channel AcquisitionMode="LaserScanningConfocalMicroscopy" Color="-1147483648" |
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150 | ID="Channel:0"> <LightSourceSettings ID="LightSource:0" Attenuation="0.8" Wavelength="510"/> |
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151 | <DetectorSettings ID="Detector:0" Binning="2x2" Gain="1.2" Offset="0.7" ReadOutRate="3200" Voltage="120"/> |
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152 | <LightPath> |
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153 | <ExcitationFilterRef ID="Filter:3"/> |
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154 | <!-- Was SecondaryExcitationFilter--> |
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155 | <EmissionFilterRef ID="Filter:2"/> |
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156 | <!-- Was SecondaryEmissionFilter--> |
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157 | </LightPath> |
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158 | </Channel> |
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159 | <Channel AcquisitionMode="LaserScanningConfocalMicroscopy" Color="-1474836488" |
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160 | ID="Channel:1"> <LightSourceSettings ID="LightSource:0" Attenuation="0.8" Wavelength="510"/> |
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161 | <DetectorSettings ID="Detector:1" Binning="2x2" Gain="1.2" Offset="0.7" ReadOutRate="3200" Voltage="120"/> |
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162 | <LightPath> |
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163 | <ExcitationFilterRef ID="Filter:3"/> |
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164 | <!-- Was SecondaryExcitationFilter--> |
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165 | <EmissionFilterRef ID="Filter:2"/> |
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166 | <!-- Was SecondaryEmissionFilter--> |
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167 | </LightPath> |
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168 | </Channel> |
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169 | <Channel AcquisitionMode="MultiPhotonMicroscopy" Color="-2144364811" ID="Channel:2"> <LightSourceSettings ID="LightSource:0" Attenuation="0.8" Wavelength="510"/> |
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170 | <DetectorSettings ID="Detector:2" Binning="2x2" Gain="1.2" Offset="0.7" ReadOutRate="3200" Voltage="120"/> |
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171 | <LightPath> |
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172 | <ExcitationFilterRef ID="Filter:3"/> |
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173 | <!-- Was SecondaryExcitationFilter--> |
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174 | <EmissionFilterRef ID="Filter:2"/> |
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175 | <!-- Was SecondaryEmissionFilter--> |
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176 | </LightPath> |
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177 | </Channel> |
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178 | <Bin:BinData BigEndian="false" Length="32" |
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179 | >/wCrzur//wB5oMPi/wBIbJO3AP8ePGCF</Bin:BinData> |
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180 | <Bin:BinData BigEndian="false" Length="32" |
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181 | >AP+rzuv/AAB5n8Pi/wBHbJO3//8dPGCF</Bin:BinData> |
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182 | <Bin:BinData BigEndian="false" Length="32" |
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183 | >//+szuv/AP95n8PiAABHbZO3AP8dPF+G</Bin:BinData> |
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184 | </Pixels> |
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185 | <ROI:ROIRef ID="ROI:0"/> |
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186 | <ROI:ROIRef ID="ROI:1"/> |
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187 | <ROI:ROIRef ID="ROI:2"/> |
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188 | </OME:Image> |
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189 | <SA:StructuredAnnotations> |
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190 | <SA:XMLAnnotation ID="Annotation:0"> |
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191 | <SA:Value> |
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192 | <test1/> |
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193 | </SA:Value> |
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194 | </SA:XMLAnnotation> |
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195 | <SA:XMLAnnotation ID="Annotation:1"> |
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196 | <SA:Value> |
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197 | <test2/> |
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198 | </SA:Value> |
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199 | </SA:XMLAnnotation> |
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200 | </SA:StructuredAnnotations> |
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201 | <ROI:ROI ID="ROI:0"> |
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202 | <ROI:Union> |
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203 | <ROI:Shape ID="Shape:0" TheC="0"> |
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204 | <ROI:Point X="1" Y="1"/> |
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205 | </ROI:Shape> |
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206 | </ROI:Union> |
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207 | </ROI:ROI> |
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208 | <ROI:ROI ID="ROI:1"> |
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209 | <ROI:Union> |
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210 | <ROI:Shape ID="Shape:1" FillRule="NonZero" FontFamily="sans-serif" FontSize="1" |
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211 | FontStyle="Bold" LineCap="Butt" StrokeDashArray="1" StrokeWidth="1" TheC="2" |
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212 | FillColor="1" StrokeColor="1" Text="Hello"> |
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213 | <ROI:Point X="1" Y="1"/> |
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214 | </ROI:Shape> |
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215 | </ROI:Union> |
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216 | <ROI:Description>ROI 1 Upgradable description.</ROI:Description> |
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217 | </ROI:ROI> |
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218 | <ROI:ROI ID="ROI:2"> |
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219 | <ROI:Union> |
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220 | <ROI:Shape ID="Shape:2" FillRule="EvenOdd" Text="Hi There! (from shape 2)"> |
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221 | <ROI:Rectangle X="1" Y="2" Width="3" Height="4"/> |
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222 | <ROI:Transform A00="10" A10="20" A01="30" A11="40" A02="50" A12="60"/> |
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223 | </ROI:Shape> |
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224 | <ROI:Shape ID="Shape:3" FillRule="EvenOdd" FontStyle="Normal" FontFamily="serif" |
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225 | Text="Hello World Text Value!(from shape 3)"> |
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226 | <ROI:Label X="1" Y="1"/> |
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227 | </ROI:Shape> |
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228 | <ROI:Shape ID="Shape:4" StrokeWidth="2" StrokeColor="15"> |
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229 | <ROI:Polygon Points="1,1 10,20, 20,20 20,10"/> |
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230 | </ROI:Shape> |
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231 | <ROI:Shape ID="Shape:5" StrokeWidth="2" StrokeColor="16"> |
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232 | <ROI:Polyline Points="15,15 15,25, 25,25 25,15" MarkerStart="Arrow" |
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233 | MarkerEnd="Arrow"/> |
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234 | </ROI:Shape> |
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235 | <ROI:Shape ID="Shape:6" StrokeWidth="2" StrokeColor="161"> |
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236 | <ROI:Polyline Points="1.1,1.1 10.1,20.1, 20.1,20.1 20.1,10.1" MarkerStart="Circle"/> |
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237 | </ROI:Shape> |
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238 | <ROI:Shape ID="Shape:7" StrokeWidth="2" StrokeColor="17"> |
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239 | <ROI:Line X1="1.7" Y1="2.7" X2="3.7" Y2="4.7" MarkerStart="Square" |
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240 | MarkerEnd="Circle"/> |
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241 | </ROI:Shape> |
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242 | <ROI:Shape ID="Shape:8" StrokeWidth="2" StrokeColor="171"> |
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243 | <ROI:Line X1="1.71" Y1="2.71" X2="3.71" Y2="4.71" MarkerEnd="Circle"/> |
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244 | </ROI:Shape> |
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245 | <ROI:Shape ID="Shape:9" StrokeWidth="2" StrokeColor="172"> |
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246 | <ROI:Line X1="1.72" Y1="2.72" X2="3.72" Y2="4.72" MarkerEnd="Circle"/> |
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247 | </ROI:Shape> |
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248 | |
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249 | </ROI:Union> |
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250 | </ROI:ROI> |
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251 | <ROI:ROI ID="ROI:3"> |
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252 | <ROI:Union> |
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253 | <ROI:Shape ID="Shape:11" Visible="false" Text="Removed Path"> |
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254 | <ROI:Label X="0" Y="0"/> |
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255 | </ROI:Shape> |
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256 | </ROI:Union> |
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257 | </ROI:ROI> |
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258 | <ROI:ROI ID="ROI:4"> |
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259 | <ROI:Union> |
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260 | <ROI:Shape ID="Shape:12" Visible="false" Text="Removed Path"> |
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261 | <ROI:Label X="0" Y="0"/> |
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262 | </ROI:Shape> |
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263 | <ROI:Shape ID="Shape:13" Visible="false" Text="Removed Path"> |
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264 | <ROI:Label X="0" Y="0"/> |
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265 | </ROI:Shape> |
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266 | </ROI:Union> |
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267 | </ROI:ROI> |
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268 | </OME> |
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