| 1 | 2013-06-11 09:27:30,857 INFO [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 1060372480 |
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| 2 | 2013-06-11 09:27:30,907 INFO [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.apple.laf.AquaLookAndFeel |
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| 3 | 2013-06-11 09:27:51,698 INFO [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 5.0.0 |
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| 4 | Client version: 5.0.0-alpha4-388-c2c93d6-dirty-ice33-b304 |
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| 5 | os_name: Mac OS X |
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| 6 | os_arch: x86_64 |
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| 7 | java_version: 1.6.0_45 |
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| 8 | os_version: 10.8.4 |
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| 9 | |
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| 10 | 2013-06-11 09:27:52,053 INFO [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: gretzky.openmicroscopy.org.uk |
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| 11 | User Name: user-3 -- Password: *** |
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| 12 | |
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| 13 | 2013-06-11 10:09:33,049 DEBUG [ ome.scifio.io.Location] (entQueue-0) Location.mapFile: embedded-stream.raw -> null |
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| 14 | 2013-06-11 10:09:33,050 DEBUG [ ome.scifio.io.Location] (entQueue-0) Location.mapFile: embedded-stream.raw -> null |
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| 15 | 2013-06-11 10:09:33,467 INFO [ ome.formats.importer.ImportConfig] ( Thread-37) OMERO Version: 5.0.0-alpha4-388-c2c93d6-dirty-ice33-b304 |
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| 16 | 2013-06-11 10:09:33,468 INFO [ ome.formats.importer.ImportConfig] ( Thread-37) Bioformats version: 4.5-DEV revision: f625662 date: 11 June 2013 |
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| 17 | 2013-06-11 10:09:33,483 INFO [ ome.formats.importer.ImportCandidates] ( Thread-37) Depth: 4 Metadata Level: MINIMUM |
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| 18 | 2013-06-11 10:09:33,484 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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| 19 | 2013-06-11 10:09:33,510 DEBUG [ ome.scifio.io.NIOByteBufferProvider] ( Thread-37) Using mapped byte buffer? false |
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| 20 | 2013-06-11 10:09:33,540 INFO [ loci.formats.ImageReader] ( Thread-37) DeltavisionReader initializing /Users/rkferguson/Documents/1 OME/4 Data/Test DVs small/P-TRE_18_R3D_D3D.dv |
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| 21 | 2013-06-11 10:09:33,542 INFO [ loci.formats.FormatHandler] ( Thread-37) Reading header |
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| 22 | 2013-06-11 10:09:33,548 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
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| 23 | 2013-06-11 10:09:33,548 INFO [ loci.formats.FormatHandler] ( Thread-37) Reading extended header |
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| 24 | 2013-06-11 10:09:33,552 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating original metadata |
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| 25 | 2013-06-11 10:09:33,554 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating OME metadata |
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| 26 | 2013-06-11 10:09:33,597 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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| 27 | 2013-06-11 10:09:33,599 INFO [ ome.formats.importer.ImportCandidates] ( Thread-37) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 113ms. (116ms total) [0 unknowns] |
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| 28 | 2013-06-11 10:09:33,599 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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| 29 | 2013-06-11 10:09:33,602 INFO [ ome.formats.importer.ImportConfig] ( Thread-37) OMERO Version: 5.0.0-alpha4-388-c2c93d6-dirty-ice33-b304 |
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| 30 | 2013-06-11 10:09:33,602 INFO [ ome.formats.importer.ImportConfig] ( Thread-37) Bioformats version: 4.5-DEV revision: f625662 date: 11 June 2013 |
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| 31 | 2013-06-11 10:09:33,974 INFO [ ome.formats.importer.ImportConfig] ( Thread-37) OMERO Version: 5.0.0-alpha4-388-c2c93d6-dirty-ice33-b304 |
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| 32 | 2013-06-11 10:09:33,974 INFO [ ome.formats.importer.ImportConfig] ( Thread-37) Bioformats version: 4.5-DEV revision: f625662 date: 11 June 2013 |
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| 33 | 2013-06-11 10:10:04,475 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
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| 34 | Cannot start the Raw pixels store. |
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| 35 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:934) |
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| 36 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8407) |
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| 37 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1823) |
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| 38 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
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| 39 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
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| 40 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
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| 41 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
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| 42 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
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| 43 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
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| 44 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
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| 45 | at java.lang.Thread.run(Thread.java:680) |
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| 46 | Caused by: omero.ValidationException |
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| 47 | serverStackTrace = "ome.conditions.ValidationException: Cannot read pixels id=385 |
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| 48 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:276) |
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| 49 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
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| 50 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
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| 51 | at java.lang.reflect.Method.invoke(Method.java:592) |
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| 52 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
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| 53 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
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| 54 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
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| 55 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
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| 56 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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| 57 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) |
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| 58 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) |
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| 59 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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| 60 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
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| 61 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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| 62 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
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| 63 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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| 64 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
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| 65 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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| 66 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
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| 67 | at $Proxy88.setPixelsId(Unknown Source) |
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| 68 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
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| 69 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
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| 70 | at java.lang.reflect.Method.invoke(Method.java:592) |
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| 71 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
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| 72 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
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| 73 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
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| 74 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
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| 75 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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| 76 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
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| 77 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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| 78 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
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| 79 | at $Proxy88.setPixelsId(Unknown Source) |
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| 80 | at sun.reflect.GeneratedMethodAccessor1528.invoke(Unknown Source) |
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| 81 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
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| 82 | at java.lang.reflect.Method.invoke(Method.java:592) |
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| 83 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
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| 84 | at ome.services.throttling.Callback.run(Callback.java:56) |
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| 85 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
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| 86 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
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| 87 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) |
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| 88 | at sun.reflect.GeneratedMethodAccessor1527.invoke(Unknown Source) |
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| 89 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
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| 90 | at java.lang.reflect.Method.invoke(Method.java:592) |
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| 91 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
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| 92 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
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| 93 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
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| 94 | at omero.cmd.CallContext.invoke(CallContext.java:65) |
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| 95 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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| 96 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
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| 97 | at $Proxy89.setPixelsId_async(Unknown Source) |
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| 98 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:288) |
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| 99 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:389) |
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| 100 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1338) |
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| 101 | at IceInternal.Incoming.invoke(Incoming.java:159) |
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| 102 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
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| 103 | at Ice.ConnectionI.message(ConnectionI.java:972) |
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| 104 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
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| 105 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
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| 106 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
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| 107 | " |
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| 108 | serverExceptionClass = "ome.conditions.ValidationException" |
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| 109 | message = "Cannot read pixels id=385" |
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| 110 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
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| 111 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
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| 112 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
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| 113 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
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| 114 | at java.lang.Class.newInstance0(Class.java:357) |
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| 115 | at java.lang.Class.newInstance(Class.java:310) |
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| 116 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
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| 117 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
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| 118 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
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| 119 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1604) |
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| 120 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2226) |
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| 121 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2198) |
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| 122 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8402) |
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| 123 | ... 9 more |
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| 124 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
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| 125 | Cannot start the Raw pixels store. |
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| 126 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:934) |
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| 127 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8407) |
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| 128 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1823) |
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| 129 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
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| 130 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
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| 131 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
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| 132 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
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| 133 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
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| 134 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
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| 135 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
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| 136 | at java.lang.Thread.run(Thread.java:680) |
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| 137 | Caused by: omero.ValidationException |
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| 138 | serverStackTrace = "ome.conditions.ValidationException: Cannot read pixels id=385 |
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| 139 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:276) |
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| 140 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
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| 141 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
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| 142 | at java.lang.reflect.Method.invoke(Method.java:592) |
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| 143 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
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| 144 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
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| 145 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
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| 146 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
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| 147 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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| 148 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) |
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| 149 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) |
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| 150 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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| 151 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
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| 152 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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| 153 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
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| 154 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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| 155 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
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| 156 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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| 157 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
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| 158 | at $Proxy88.setPixelsId(Unknown Source) |
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| 159 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
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| 160 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
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| 161 | at java.lang.reflect.Method.invoke(Method.java:592) |
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| 162 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
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| 163 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
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| 164 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
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| 165 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
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| 166 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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| 167 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
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| 168 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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| 169 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
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| 170 | at $Proxy88.setPixelsId(Unknown Source) |
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| 171 | at sun.reflect.GeneratedMethodAccessor1528.invoke(Unknown Source) |
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| 172 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
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| 173 | at java.lang.reflect.Method.invoke(Method.java:592) |
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| 174 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
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| 175 | at ome.services.throttling.Callback.run(Callback.java:56) |
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| 176 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
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| 177 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
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| 178 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) |
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| 179 | at sun.reflect.GeneratedMethodAccessor1527.invoke(Unknown Source) |
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| 180 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
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| 181 | at java.lang.reflect.Method.invoke(Method.java:592) |
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| 182 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
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| 183 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
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| 184 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
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| 185 | at omero.cmd.CallContext.invoke(CallContext.java:65) |
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| 186 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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| 187 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
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| 188 | at $Proxy89.setPixelsId_async(Unknown Source) |
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| 189 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:288) |
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| 190 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:389) |
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| 191 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1338) |
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| 192 | at IceInternal.Incoming.invoke(Incoming.java:159) |
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| 193 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
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| 194 | at Ice.ConnectionI.message(ConnectionI.java:972) |
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| 195 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
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| 196 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
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| 197 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
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| 198 | " |
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| 199 | serverExceptionClass = "ome.conditions.ValidationException" |
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| 200 | message = "Cannot read pixels id=385" |
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| 201 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
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| 202 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
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| 203 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
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| 204 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
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| 205 | at java.lang.Class.newInstance0(Class.java:357) |
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| 206 | at java.lang.Class.newInstance(Class.java:310) |
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| 207 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
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| 208 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
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| 209 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
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| 210 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1604) |
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| 211 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2226) |
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| 212 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2198) |
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| 213 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8402) |
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| 214 | ... 9 more |
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| 215 | Exception in thread "AWT-EventQueue-0" |
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| 216 | |
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| 217 | 2013-06-11 10:11:07,521 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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| 218 | 2013-06-11 10:12:48,849 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape on coord T: 0 Z: 0 |
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| 219 | 2013-06-11 10:15:22,407 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape with ROI ID : 1 |
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| 220 | 2013-06-11 10:15:22,408 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape with ROI ID : 2 |
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| 221 | 2013-06-11 10:15:22,408 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape with ROI ID : 3 |
|---|
| 222 | 2013-06-11 10:15:41,019 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
|---|
| 223 | Cannot start the Raw pixels store. |
|---|
| 224 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:934) |
|---|
| 225 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8407) |
|---|
| 226 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1823) |
|---|
| 227 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
|---|
| 228 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
|---|
| 229 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
|---|
| 230 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
|---|
| 231 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
|---|
| 232 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
|---|
| 233 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
|---|
| 234 | at java.lang.Thread.run(Thread.java:680) |
|---|
| 235 | Caused by: omero.ValidationException |
|---|
| 236 | serverStackTrace = "ome.conditions.ValidationException: Cannot read pixels id=646 |
|---|
| 237 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:276) |
|---|
| 238 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 239 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 240 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 241 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 242 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 243 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 244 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
|---|
| 245 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 246 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) |
|---|
| 247 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) |
|---|
| 248 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 249 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
|---|
| 250 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 251 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
|---|
| 252 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 253 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
|---|
| 254 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 255 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 256 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 257 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 258 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 259 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 260 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 261 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 262 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 263 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
|---|
| 264 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 265 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
|---|
| 266 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 267 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 268 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 269 | at sun.reflect.GeneratedMethodAccessor1528.invoke(Unknown Source) |
|---|
| 270 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 271 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 272 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
|---|
| 273 | at ome.services.throttling.Callback.run(Callback.java:56) |
|---|
| 274 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
|---|
| 275 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
|---|
| 276 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) |
|---|
| 277 | at sun.reflect.GeneratedMethodAccessor1527.invoke(Unknown Source) |
|---|
| 278 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 279 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 280 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 281 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 282 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 283 | at omero.cmd.CallContext.invoke(CallContext.java:65) |
|---|
| 284 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 285 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 286 | at $Proxy89.setPixelsId_async(Unknown Source) |
|---|
| 287 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:288) |
|---|
| 288 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:389) |
|---|
| 289 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1338) |
|---|
| 290 | at IceInternal.Incoming.invoke(Incoming.java:159) |
|---|
| 291 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
|---|
| 292 | at Ice.ConnectionI.message(ConnectionI.java:972) |
|---|
| 293 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
|---|
| 294 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
|---|
| 295 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
|---|
| 296 | " |
|---|
| 297 | serverExceptionClass = "ome.conditions.ValidationException" |
|---|
| 298 | message = "Cannot read pixels id=646" |
|---|
| 299 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
|---|
| 300 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
|---|
| 301 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
|---|
| 302 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
|---|
| 303 | at java.lang.Class.newInstance0(Class.java:357) |
|---|
| 304 | at java.lang.Class.newInstance(Class.java:310) |
|---|
| 305 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
|---|
| 306 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
|---|
| 307 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
|---|
| 308 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1604) |
|---|
| 309 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2226) |
|---|
| 310 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2198) |
|---|
| 311 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8402) |
|---|
| 312 | ... 9 more |
|---|
| 313 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
|---|
| 314 | Cannot start the Raw pixels store. |
|---|
| 315 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:934) |
|---|
| 316 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8407) |
|---|
| 317 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1823) |
|---|
| 318 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
|---|
| 319 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
|---|
| 320 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
|---|
| 321 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
|---|
| 322 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
|---|
| 323 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
|---|
| 324 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
|---|
| 325 | at java.lang.Thread.run(Thread.java:680) |
|---|
| 326 | Caused by: omero.ValidationException |
|---|
| 327 | serverStackTrace = "ome.conditions.ValidationException: Cannot read pixels id=646 |
|---|
| 328 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:276) |
|---|
| 329 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 330 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 331 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 332 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 333 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 334 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 335 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
|---|
| 336 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 337 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) |
|---|
| 338 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) |
|---|
| 339 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 340 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
|---|
| 341 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 342 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
|---|
| 343 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 344 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
|---|
| 345 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 346 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 347 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 348 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 349 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 350 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 351 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 352 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 353 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 354 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
|---|
| 355 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 356 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
|---|
| 357 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 358 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 359 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 360 | at sun.reflect.GeneratedMethodAccessor1528.invoke(Unknown Source) |
|---|
| 361 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 362 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 363 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
|---|
| 364 | at ome.services.throttling.Callback.run(Callback.java:56) |
|---|
| 365 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
|---|
| 366 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
|---|
| 367 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) |
|---|
| 368 | at sun.reflect.GeneratedMethodAccessor1527.invoke(Unknown Source) |
|---|
| 369 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 370 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 371 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 372 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 373 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 374 | at omero.cmd.CallContext.invoke(CallContext.java:65) |
|---|
| 375 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 376 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 377 | at $Proxy89.setPixelsId_async(Unknown Source) |
|---|
| 378 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:288) |
|---|
| 379 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:389) |
|---|
| 380 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1338) |
|---|
| 381 | at IceInternal.Incoming.invoke(Incoming.java:159) |
|---|
| 382 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
|---|
| 383 | at Ice.ConnectionI.message(ConnectionI.java:972) |
|---|
| 384 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
|---|
| 385 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
|---|
| 386 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
|---|
| 387 | " |
|---|
| 388 | serverExceptionClass = "ome.conditions.ValidationException" |
|---|
| 389 | message = "Cannot read pixels id=646" |
|---|
| 390 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
|---|
| 391 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
|---|
| 392 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
|---|
| 393 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
|---|
| 394 | at java.lang.Class.newInstance0(Class.java:357) |
|---|
| 395 | at java.lang.Class.newInstance(Class.java:310) |
|---|
| 396 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
|---|
| 397 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
|---|
| 398 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
|---|
| 399 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1604) |
|---|
| 400 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2226) |
|---|
| 401 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2198) |
|---|
| 402 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8402) |
|---|
| 403 | ... 9 more |
|---|
| 404 | Exception in thread "AWT-EventQueue-0" |
|---|
| 405 | |
|---|
| 406 | 2013-06-11 10:17:27,519 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape on coord T: 0 Z: 0 |
|---|
| 407 | 2013-06-11 10:20:15,093 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
|---|
| 408 | Cannot start the Raw pixels store. |
|---|
| 409 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:934) |
|---|
| 410 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8407) |
|---|
| 411 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1823) |
|---|
| 412 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
|---|
| 413 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
|---|
| 414 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
|---|
| 415 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
|---|
| 416 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
|---|
| 417 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
|---|
| 418 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
|---|
| 419 | at java.lang.Thread.run(Thread.java:680) |
|---|
| 420 | Caused by: omero.ValidationException |
|---|
| 421 | serverStackTrace = "ome.conditions.ValidationException: Cannot read pixels id=487 |
|---|
| 422 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:276) |
|---|
| 423 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 424 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 425 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 426 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 427 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 428 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 429 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
|---|
| 430 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 431 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) |
|---|
| 432 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) |
|---|
| 433 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 434 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
|---|
| 435 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 436 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
|---|
| 437 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 438 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
|---|
| 439 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 440 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 441 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 442 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 443 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 444 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 445 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 446 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 447 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 448 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
|---|
| 449 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 450 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
|---|
| 451 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 452 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 453 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 454 | at sun.reflect.GeneratedMethodAccessor1528.invoke(Unknown Source) |
|---|
| 455 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 456 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 457 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
|---|
| 458 | at ome.services.throttling.Callback.run(Callback.java:56) |
|---|
| 459 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
|---|
| 460 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
|---|
| 461 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) |
|---|
| 462 | at sun.reflect.GeneratedMethodAccessor1527.invoke(Unknown Source) |
|---|
| 463 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 464 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 465 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 466 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 467 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 468 | at omero.cmd.CallContext.invoke(CallContext.java:65) |
|---|
| 469 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 470 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 471 | at $Proxy89.setPixelsId_async(Unknown Source) |
|---|
| 472 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:288) |
|---|
| 473 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:389) |
|---|
| 474 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1338) |
|---|
| 475 | at IceInternal.Incoming.invoke(Incoming.java:159) |
|---|
| 476 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
|---|
| 477 | at Ice.ConnectionI.message(ConnectionI.java:972) |
|---|
| 478 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
|---|
| 479 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
|---|
| 480 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
|---|
| 481 | " |
|---|
| 482 | serverExceptionClass = "ome.conditions.ValidationException" |
|---|
| 483 | message = "Cannot read pixels id=487" |
|---|
| 484 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
|---|
| 485 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
|---|
| 486 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
|---|
| 487 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
|---|
| 488 | at java.lang.Class.newInstance0(Class.java:357) |
|---|
| 489 | at java.lang.Class.newInstance(Class.java:310) |
|---|
| 490 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
|---|
| 491 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
|---|
| 492 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
|---|
| 493 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1604) |
|---|
| 494 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2226) |
|---|
| 495 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2198) |
|---|
| 496 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8402) |
|---|
| 497 | ... 9 more |
|---|
| 498 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
|---|
| 499 | Cannot start the Raw pixels store. |
|---|
| 500 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:934) |
|---|
| 501 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8407) |
|---|
| 502 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1823) |
|---|
| 503 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
|---|
| 504 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
|---|
| 505 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
|---|
| 506 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
|---|
| 507 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
|---|
| 508 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
|---|
| 509 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
|---|
| 510 | at java.lang.Thread.run(Thread.java:680) |
|---|
| 511 | Caused by: omero.ValidationException |
|---|
| 512 | serverStackTrace = "ome.conditions.ValidationException: Cannot read pixels id=487 |
|---|
| 513 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:276) |
|---|
| 514 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 515 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 516 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 517 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 518 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 519 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 520 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
|---|
| 521 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 522 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) |
|---|
| 523 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) |
|---|
| 524 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 525 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
|---|
| 526 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 527 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
|---|
| 528 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 529 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
|---|
| 530 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 531 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 532 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 533 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 534 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 535 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 536 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 537 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 538 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 539 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
|---|
| 540 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 541 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
|---|
| 542 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 543 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 544 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 545 | at sun.reflect.GeneratedMethodAccessor1528.invoke(Unknown Source) |
|---|
| 546 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 547 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 548 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
|---|
| 549 | at ome.services.throttling.Callback.run(Callback.java:56) |
|---|
| 550 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
|---|
| 551 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
|---|
| 552 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) |
|---|
| 553 | at sun.reflect.GeneratedMethodAccessor1527.invoke(Unknown Source) |
|---|
| 554 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 555 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 556 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 557 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 558 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 559 | at omero.cmd.CallContext.invoke(CallContext.java:65) |
|---|
| 560 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 561 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 562 | at $Proxy89.setPixelsId_async(Unknown Source) |
|---|
| 563 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:288) |
|---|
| 564 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:389) |
|---|
| 565 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1338) |
|---|
| 566 | at IceInternal.Incoming.invoke(Incoming.java:159) |
|---|
| 567 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
|---|
| 568 | at Ice.ConnectionI.message(ConnectionI.java:972) |
|---|
| 569 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
|---|
| 570 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
|---|
| 571 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
|---|
| 572 | " |
|---|
| 573 | serverExceptionClass = "ome.conditions.ValidationException" |
|---|
| 574 | message = "Cannot read pixels id=487" |
|---|
| 575 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
|---|
| 576 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
|---|
| 577 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
|---|
| 578 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
|---|
| 579 | at java.lang.Class.newInstance0(Class.java:357) |
|---|
| 580 | at java.lang.Class.newInstance(Class.java:310) |
|---|
| 581 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
|---|
| 582 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
|---|
| 583 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
|---|
| 584 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1604) |
|---|
| 585 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2226) |
|---|
| 586 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2198) |
|---|
| 587 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8402) |
|---|
| 588 | ... 9 more |
|---|
| 589 | Exception in thread "AWT-EventQueue-0" |
|---|
| 590 | |
|---|
| 591 | 2013-06-11 10:20:45,080 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape on coord T: 0 Z: 0 |
|---|
| 592 | 2013-06-11 10:25:54,475 INFO [opy.shoola.env.rnd.PixelsServicesFactory] (1-thread-1) Rendering Engine shut down: PixelsID 487 |
|---|
| 593 | 2013-06-11 11:46:36,058 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
|---|
| 594 | Cannot start the Raw pixels store. |
|---|
| 595 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:934) |
|---|
| 596 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8407) |
|---|
| 597 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1823) |
|---|
| 598 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
|---|
| 599 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
|---|
| 600 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
|---|
| 601 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
|---|
| 602 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
|---|
| 603 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
|---|
| 604 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
|---|
| 605 | at java.lang.Thread.run(Thread.java:680) |
|---|
| 606 | Caused by: omero.ValidationException |
|---|
| 607 | serverStackTrace = "ome.conditions.ValidationException: Cannot read pixels id=617 |
|---|
| 608 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:276) |
|---|
| 609 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 610 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 611 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 612 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 613 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 614 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 615 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
|---|
| 616 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 617 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) |
|---|
| 618 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) |
|---|
| 619 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 620 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
|---|
| 621 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 622 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
|---|
| 623 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 624 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
|---|
| 625 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 626 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 627 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 628 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 629 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 630 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 631 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 632 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 633 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 634 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
|---|
| 635 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 636 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
|---|
| 637 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 638 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 639 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 640 | at sun.reflect.GeneratedMethodAccessor1528.invoke(Unknown Source) |
|---|
| 641 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 642 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 643 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
|---|
| 644 | at ome.services.throttling.Callback.run(Callback.java:56) |
|---|
| 645 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
|---|
| 646 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
|---|
| 647 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) |
|---|
| 648 | at sun.reflect.GeneratedMethodAccessor1527.invoke(Unknown Source) |
|---|
| 649 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 650 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 651 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 652 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 653 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 654 | at omero.cmd.CallContext.invoke(CallContext.java:65) |
|---|
| 655 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 656 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 657 | at $Proxy89.setPixelsId_async(Unknown Source) |
|---|
| 658 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:288) |
|---|
| 659 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:389) |
|---|
| 660 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1338) |
|---|
| 661 | at IceInternal.Incoming.invoke(Incoming.java:159) |
|---|
| 662 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
|---|
| 663 | at Ice.ConnectionI.message(ConnectionI.java:972) |
|---|
| 664 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
|---|
| 665 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
|---|
| 666 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
|---|
| 667 | " |
|---|
| 668 | serverExceptionClass = "ome.conditions.ValidationException" |
|---|
| 669 | message = "Cannot read pixels id=617" |
|---|
| 670 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
|---|
| 671 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
|---|
| 672 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
|---|
| 673 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
|---|
| 674 | at java.lang.Class.newInstance0(Class.java:357) |
|---|
| 675 | at java.lang.Class.newInstance(Class.java:310) |
|---|
| 676 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
|---|
| 677 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
|---|
| 678 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
|---|
| 679 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1604) |
|---|
| 680 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2226) |
|---|
| 681 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2198) |
|---|
| 682 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8402) |
|---|
| 683 | ... 9 more |
|---|
| 684 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
|---|
| 685 | Cannot start the Raw pixels store. |
|---|
| 686 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:934) |
|---|
| 687 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8407) |
|---|
| 688 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1823) |
|---|
| 689 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
|---|
| 690 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
|---|
| 691 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
|---|
| 692 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
|---|
| 693 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
|---|
| 694 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
|---|
| 695 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
|---|
| 696 | at java.lang.Thread.run(Thread.java:680) |
|---|
| 697 | Caused by: omero.ValidationException |
|---|
| 698 | serverStackTrace = "ome.conditions.ValidationException: Cannot read pixels id=617 |
|---|
| 699 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:276) |
|---|
| 700 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 701 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 702 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 703 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 704 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 705 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 706 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
|---|
| 707 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 708 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) |
|---|
| 709 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) |
|---|
| 710 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 711 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
|---|
| 712 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 713 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
|---|
| 714 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 715 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
|---|
| 716 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 717 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 718 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 719 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 720 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 721 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 722 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 723 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 724 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 725 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
|---|
| 726 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 727 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
|---|
| 728 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 729 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 730 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 731 | at sun.reflect.GeneratedMethodAccessor1528.invoke(Unknown Source) |
|---|
| 732 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 733 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 734 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
|---|
| 735 | at ome.services.throttling.Callback.run(Callback.java:56) |
|---|
| 736 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
|---|
| 737 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
|---|
| 738 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) |
|---|
| 739 | at sun.reflect.GeneratedMethodAccessor1527.invoke(Unknown Source) |
|---|
| 740 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 741 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 742 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 743 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 744 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 745 | at omero.cmd.CallContext.invoke(CallContext.java:65) |
|---|
| 746 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 747 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 748 | at $Proxy89.setPixelsId_async(Unknown Source) |
|---|
| 749 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:288) |
|---|
| 750 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:389) |
|---|
| 751 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1338) |
|---|
| 752 | at IceInternal.Incoming.invoke(Incoming.java:159) |
|---|
| 753 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
|---|
| 754 | at Ice.ConnectionI.message(ConnectionI.java:972) |
|---|
| 755 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
|---|
| 756 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
|---|
| 757 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
|---|
| 758 | " |
|---|
| 759 | serverExceptionClass = "ome.conditions.ValidationException" |
|---|
| 760 | message = "Cannot read pixels id=617" |
|---|
| 761 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
|---|
| 762 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
|---|
| 763 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
|---|
| 764 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
|---|
| 765 | at java.lang.Class.newInstance0(Class.java:357) |
|---|
| 766 | at java.lang.Class.newInstance(Class.java:310) |
|---|
| 767 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
|---|
| 768 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
|---|
| 769 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
|---|
| 770 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1604) |
|---|
| 771 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2226) |
|---|
| 772 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2198) |
|---|
| 773 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8402) |
|---|
| 774 | ... 9 more |
|---|
| 775 | Exception in thread "AWT-EventQueue-0" |
|---|
| 776 | |
|---|
| 777 | 2013-06-11 11:47:45,849 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape on coord T: 0 Z: 0 |
|---|
| 778 | 2013-06-11 11:52:03,328 INFO [opy.shoola.env.rnd.PixelsServicesFactory] (1-thread-1) Rendering Engine shut down: PixelsID 617 |
|---|
| 779 | 2013-06-11 11:54:27,816 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
|---|
| 780 | Cannot start the Raw pixels store. |
|---|
| 781 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:934) |
|---|
| 782 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8407) |
|---|
| 783 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1823) |
|---|
| 784 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
|---|
| 785 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
|---|
| 786 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
|---|
| 787 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
|---|
| 788 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
|---|
| 789 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
|---|
| 790 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
|---|
| 791 | at java.lang.Thread.run(Thread.java:680) |
|---|
| 792 | Caused by: omero.ValidationException |
|---|
| 793 | serverStackTrace = "ome.conditions.ValidationException: Cannot read pixels id=709 |
|---|
| 794 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:276) |
|---|
| 795 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 796 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 797 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 798 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 799 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 800 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 801 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
|---|
| 802 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 803 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) |
|---|
| 804 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) |
|---|
| 805 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 806 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
|---|
| 807 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 808 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
|---|
| 809 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 810 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
|---|
| 811 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 812 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 813 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 814 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 815 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 816 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 817 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 818 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 819 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 820 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
|---|
| 821 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 822 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
|---|
| 823 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 824 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 825 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 826 | at sun.reflect.GeneratedMethodAccessor1528.invoke(Unknown Source) |
|---|
| 827 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 828 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 829 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
|---|
| 830 | at ome.services.throttling.Callback.run(Callback.java:56) |
|---|
| 831 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
|---|
| 832 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
|---|
| 833 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) |
|---|
| 834 | at sun.reflect.GeneratedMethodAccessor1527.invoke(Unknown Source) |
|---|
| 835 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 836 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 837 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 838 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 839 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 840 | at omero.cmd.CallContext.invoke(CallContext.java:65) |
|---|
| 841 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 842 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 843 | at $Proxy89.setPixelsId_async(Unknown Source) |
|---|
| 844 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:288) |
|---|
| 845 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:389) |
|---|
| 846 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1338) |
|---|
| 847 | at IceInternal.Incoming.invoke(Incoming.java:159) |
|---|
| 848 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
|---|
| 849 | at Ice.ConnectionI.message(ConnectionI.java:972) |
|---|
| 850 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
|---|
| 851 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
|---|
| 852 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
|---|
| 853 | " |
|---|
| 854 | serverExceptionClass = "ome.conditions.ValidationException" |
|---|
| 855 | message = "Cannot read pixels id=709" |
|---|
| 856 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
|---|
| 857 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
|---|
| 858 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
|---|
| 859 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
|---|
| 860 | at java.lang.Class.newInstance0(Class.java:357) |
|---|
| 861 | at java.lang.Class.newInstance(Class.java:310) |
|---|
| 862 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
|---|
| 863 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
|---|
| 864 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
|---|
| 865 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1604) |
|---|
| 866 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2226) |
|---|
| 867 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2198) |
|---|
| 868 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8402) |
|---|
| 869 | ... 9 more |
|---|
| 870 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
|---|
| 871 | Cannot start the Raw pixels store. |
|---|
| 872 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:934) |
|---|
| 873 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8407) |
|---|
| 874 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1823) |
|---|
| 875 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
|---|
| 876 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
|---|
| 877 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
|---|
| 878 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
|---|
| 879 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
|---|
| 880 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
|---|
| 881 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
|---|
| 882 | at java.lang.Thread.run(Thread.java:680) |
|---|
| 883 | Caused by: omero.ValidationException |
|---|
| 884 | serverStackTrace = "ome.conditions.ValidationException: Cannot read pixels id=709 |
|---|
| 885 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:276) |
|---|
| 886 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 887 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 888 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 889 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 890 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 891 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 892 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
|---|
| 893 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 894 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) |
|---|
| 895 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) |
|---|
| 896 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 897 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
|---|
| 898 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 899 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
|---|
| 900 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 901 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
|---|
| 902 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 903 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 904 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 905 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 906 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 907 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 908 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 909 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 910 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 911 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
|---|
| 912 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 913 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
|---|
| 914 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 915 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 916 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 917 | at sun.reflect.GeneratedMethodAccessor1528.invoke(Unknown Source) |
|---|
| 918 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 919 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 920 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
|---|
| 921 | at ome.services.throttling.Callback.run(Callback.java:56) |
|---|
| 922 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
|---|
| 923 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
|---|
| 924 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) |
|---|
| 925 | at sun.reflect.GeneratedMethodAccessor1527.invoke(Unknown Source) |
|---|
| 926 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 927 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 928 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 929 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 930 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 931 | at omero.cmd.CallContext.invoke(CallContext.java:65) |
|---|
| 932 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 933 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 934 | at $Proxy89.setPixelsId_async(Unknown Source) |
|---|
| 935 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:288) |
|---|
| 936 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:389) |
|---|
| 937 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1338) |
|---|
| 938 | at IceInternal.Incoming.invoke(Incoming.java:159) |
|---|
| 939 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
|---|
| 940 | at Ice.ConnectionI.message(ConnectionI.java:972) |
|---|
| 941 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
|---|
| 942 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
|---|
| 943 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
|---|
| 944 | " |
|---|
| 945 | serverExceptionClass = "ome.conditions.ValidationException" |
|---|
| 946 | message = "Cannot read pixels id=709" |
|---|
| 947 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
|---|
| 948 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
|---|
| 949 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
|---|
| 950 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
|---|
| 951 | at java.lang.Class.newInstance0(Class.java:357) |
|---|
| 952 | at java.lang.Class.newInstance(Class.java:310) |
|---|
| 953 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
|---|
| 954 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
|---|
| 955 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
|---|
| 956 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1604) |
|---|
| 957 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2226) |
|---|
| 958 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2198) |
|---|
| 959 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8402) |
|---|
| 960 | ... 9 more |
|---|
| 961 | Exception in thread "AWT-EventQueue-0" |
|---|
| 962 | |
|---|
| 963 | 2013-06-11 11:55:36,409 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape on coord T: 0 Z: 0 |
|---|
| 964 | 2013-06-11 11:59:47,150 INFO [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 1060372480 |
|---|
| 965 | 2013-06-11 11:59:47,176 INFO [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.apple.laf.AquaLookAndFeel |
|---|
| 966 | 2013-06-11 11:59:49,868 INFO [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 5.0.0 |
|---|
| 967 | Client version: 5.0.0-alpha4-388-c2c93d6-dirty-ice33-b304 |
|---|
| 968 | os_name: Mac OS X |
|---|
| 969 | os_arch: x86_64 |
|---|
| 970 | java_version: 1.6.0_45 |
|---|
| 971 | os_version: 10.8.4 |
|---|
| 972 | |
|---|
| 973 | 2013-06-11 11:59:50,081 INFO [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: gretzky.openmicroscopy.org.uk |
|---|
| 974 | User Name: user-3 -- Password: *** |
|---|
| 975 | |
|---|
| 976 | 2013-06-11 12:01:02,671 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
|---|
| 977 | Cannot start the Raw pixels store. |
|---|
| 978 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:934) |
|---|
| 979 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8407) |
|---|
| 980 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1823) |
|---|
| 981 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
|---|
| 982 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
|---|
| 983 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
|---|
| 984 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
|---|
| 985 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
|---|
| 986 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
|---|
| 987 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
|---|
| 988 | at java.lang.Thread.run(Thread.java:680) |
|---|
| 989 | Caused by: omero.ValidationException |
|---|
| 990 | serverStackTrace = "ome.conditions.ValidationException: Cannot read pixels id=385 |
|---|
| 991 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:276) |
|---|
| 992 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 993 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 994 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 995 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 996 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 997 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 998 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
|---|
| 999 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1000 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) |
|---|
| 1001 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) |
|---|
| 1002 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1003 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
|---|
| 1004 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1005 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
|---|
| 1006 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1007 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
|---|
| 1008 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1009 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1010 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 1011 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 1012 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1013 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1014 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1015 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1016 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1017 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
|---|
| 1018 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1019 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
|---|
| 1020 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1021 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1022 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 1023 | at sun.reflect.GeneratedMethodAccessor1528.invoke(Unknown Source) |
|---|
| 1024 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1025 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1026 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
|---|
| 1027 | at ome.services.throttling.Callback.run(Callback.java:56) |
|---|
| 1028 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
|---|
| 1029 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
|---|
| 1030 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) |
|---|
| 1031 | at sun.reflect.GeneratedMethodAccessor1527.invoke(Unknown Source) |
|---|
| 1032 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1033 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1034 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1035 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1036 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1037 | at omero.cmd.CallContext.invoke(CallContext.java:65) |
|---|
| 1038 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1039 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1040 | at $Proxy89.setPixelsId_async(Unknown Source) |
|---|
| 1041 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:288) |
|---|
| 1042 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:389) |
|---|
| 1043 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1338) |
|---|
| 1044 | at IceInternal.Incoming.invoke(Incoming.java:159) |
|---|
| 1045 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
|---|
| 1046 | at Ice.ConnectionI.message(ConnectionI.java:972) |
|---|
| 1047 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
|---|
| 1048 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
|---|
| 1049 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
|---|
| 1050 | " |
|---|
| 1051 | serverExceptionClass = "ome.conditions.ValidationException" |
|---|
| 1052 | message = "Cannot read pixels id=385" |
|---|
| 1053 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
|---|
| 1054 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
|---|
| 1055 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
|---|
| 1056 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
|---|
| 1057 | at java.lang.Class.newInstance0(Class.java:357) |
|---|
| 1058 | at java.lang.Class.newInstance(Class.java:310) |
|---|
| 1059 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
|---|
| 1060 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
|---|
| 1061 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
|---|
| 1062 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1604) |
|---|
| 1063 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2226) |
|---|
| 1064 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2198) |
|---|
| 1065 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8402) |
|---|
| 1066 | ... 9 more |
|---|
| 1067 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
|---|
| 1068 | Cannot start the Raw pixels store. |
|---|
| 1069 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:934) |
|---|
| 1070 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8407) |
|---|
| 1071 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1823) |
|---|
| 1072 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
|---|
| 1073 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
|---|
| 1074 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
|---|
| 1075 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
|---|
| 1076 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
|---|
| 1077 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
|---|
| 1078 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
|---|
| 1079 | at java.lang.Thread.run(Thread.java:680) |
|---|
| 1080 | Caused by: omero.ValidationException |
|---|
| 1081 | serverStackTrace = "ome.conditions.ValidationException: Cannot read pixels id=385 |
|---|
| 1082 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:276) |
|---|
| 1083 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 1084 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1085 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1086 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1087 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1088 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1089 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
|---|
| 1090 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1091 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) |
|---|
| 1092 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) |
|---|
| 1093 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1094 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
|---|
| 1095 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1096 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
|---|
| 1097 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1098 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
|---|
| 1099 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1100 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1101 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 1102 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 1103 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1104 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1105 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1106 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1107 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1108 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
|---|
| 1109 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1110 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
|---|
| 1111 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1112 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1113 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 1114 | at sun.reflect.GeneratedMethodAccessor1528.invoke(Unknown Source) |
|---|
| 1115 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1116 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1117 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
|---|
| 1118 | at ome.services.throttling.Callback.run(Callback.java:56) |
|---|
| 1119 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
|---|
| 1120 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
|---|
| 1121 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) |
|---|
| 1122 | at sun.reflect.GeneratedMethodAccessor1527.invoke(Unknown Source) |
|---|
| 1123 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1124 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1125 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1126 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1127 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1128 | at omero.cmd.CallContext.invoke(CallContext.java:65) |
|---|
| 1129 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1130 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1131 | at $Proxy89.setPixelsId_async(Unknown Source) |
|---|
| 1132 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:288) |
|---|
| 1133 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:389) |
|---|
| 1134 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1338) |
|---|
| 1135 | at IceInternal.Incoming.invoke(Incoming.java:159) |
|---|
| 1136 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
|---|
| 1137 | at Ice.ConnectionI.message(ConnectionI.java:972) |
|---|
| 1138 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
|---|
| 1139 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
|---|
| 1140 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
|---|
| 1141 | " |
|---|
| 1142 | serverExceptionClass = "ome.conditions.ValidationException" |
|---|
| 1143 | message = "Cannot read pixels id=385" |
|---|
| 1144 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
|---|
| 1145 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
|---|
| 1146 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
|---|
| 1147 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
|---|
| 1148 | at java.lang.Class.newInstance0(Class.java:357) |
|---|
| 1149 | at java.lang.Class.newInstance(Class.java:310) |
|---|
| 1150 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
|---|
| 1151 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
|---|
| 1152 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
|---|
| 1153 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1604) |
|---|
| 1154 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2226) |
|---|
| 1155 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2198) |
|---|
| 1156 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8402) |
|---|
| 1157 | ... 9 more |
|---|
| 1158 | Exception in thread "AWT-EventQueue-0" |
|---|
| 1159 | |
|---|
| 1160 | 2013-06-11 12:01:24,759 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape on coord T: 0 Z: 0 |
|---|
| 1161 | 2013-06-11 12:05:03,780 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
|---|
| 1162 | Cannot start the Raw pixels store. |
|---|
| 1163 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:934) |
|---|
| 1164 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8407) |
|---|
| 1165 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1823) |
|---|
| 1166 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
|---|
| 1167 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
|---|
| 1168 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
|---|
| 1169 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
|---|
| 1170 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
|---|
| 1171 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
|---|
| 1172 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
|---|
| 1173 | at java.lang.Thread.run(Thread.java:680) |
|---|
| 1174 | Caused by: omero.ValidationException |
|---|
| 1175 | serverStackTrace = "ome.conditions.ValidationException: Cannot read pixels id=623 |
|---|
| 1176 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:276) |
|---|
| 1177 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 1178 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1179 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1180 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1181 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1182 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1183 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
|---|
| 1184 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1185 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) |
|---|
| 1186 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) |
|---|
| 1187 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1188 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
|---|
| 1189 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1190 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
|---|
| 1191 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1192 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
|---|
| 1193 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1194 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1195 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 1196 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 1197 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1198 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1199 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1200 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1201 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1202 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
|---|
| 1203 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1204 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
|---|
| 1205 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1206 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1207 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 1208 | at sun.reflect.GeneratedMethodAccessor1528.invoke(Unknown Source) |
|---|
| 1209 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1210 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1211 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
|---|
| 1212 | at ome.services.throttling.Callback.run(Callback.java:56) |
|---|
| 1213 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
|---|
| 1214 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
|---|
| 1215 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) |
|---|
| 1216 | at sun.reflect.GeneratedMethodAccessor1527.invoke(Unknown Source) |
|---|
| 1217 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1218 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1219 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1220 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1221 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1222 | at omero.cmd.CallContext.invoke(CallContext.java:65) |
|---|
| 1223 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1224 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1225 | at $Proxy89.setPixelsId_async(Unknown Source) |
|---|
| 1226 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:288) |
|---|
| 1227 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:389) |
|---|
| 1228 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1338) |
|---|
| 1229 | at IceInternal.Incoming.invoke(Incoming.java:159) |
|---|
| 1230 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
|---|
| 1231 | at Ice.ConnectionI.message(ConnectionI.java:972) |
|---|
| 1232 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
|---|
| 1233 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
|---|
| 1234 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
|---|
| 1235 | " |
|---|
| 1236 | serverExceptionClass = "ome.conditions.ValidationException" |
|---|
| 1237 | message = "Cannot read pixels id=623" |
|---|
| 1238 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
|---|
| 1239 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
|---|
| 1240 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
|---|
| 1241 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
|---|
| 1242 | at java.lang.Class.newInstance0(Class.java:357) |
|---|
| 1243 | at java.lang.Class.newInstance(Class.java:310) |
|---|
| 1244 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
|---|
| 1245 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
|---|
| 1246 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
|---|
| 1247 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1604) |
|---|
| 1248 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2226) |
|---|
| 1249 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2198) |
|---|
| 1250 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8402) |
|---|
| 1251 | ... 9 more |
|---|
| 1252 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
|---|
| 1253 | Cannot start the Raw pixels store. |
|---|
| 1254 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:934) |
|---|
| 1255 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8407) |
|---|
| 1256 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1823) |
|---|
| 1257 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
|---|
| 1258 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
|---|
| 1259 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
|---|
| 1260 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
|---|
| 1261 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
|---|
| 1262 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
|---|
| 1263 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
|---|
| 1264 | at java.lang.Thread.run(Thread.java:680) |
|---|
| 1265 | Caused by: omero.ValidationException |
|---|
| 1266 | serverStackTrace = "ome.conditions.ValidationException: Cannot read pixels id=623 |
|---|
| 1267 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:276) |
|---|
| 1268 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 1269 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1270 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1271 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1272 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1273 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1274 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
|---|
| 1275 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1276 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) |
|---|
| 1277 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) |
|---|
| 1278 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1279 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
|---|
| 1280 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1281 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
|---|
| 1282 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1283 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
|---|
| 1284 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1285 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1286 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 1287 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 1288 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1289 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1290 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1291 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1292 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1293 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
|---|
| 1294 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1295 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
|---|
| 1296 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1297 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1298 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 1299 | at sun.reflect.GeneratedMethodAccessor1528.invoke(Unknown Source) |
|---|
| 1300 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1301 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1302 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
|---|
| 1303 | at ome.services.throttling.Callback.run(Callback.java:56) |
|---|
| 1304 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
|---|
| 1305 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
|---|
| 1306 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) |
|---|
| 1307 | at sun.reflect.GeneratedMethodAccessor1527.invoke(Unknown Source) |
|---|
| 1308 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1309 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1310 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1311 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1312 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1313 | at omero.cmd.CallContext.invoke(CallContext.java:65) |
|---|
| 1314 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1315 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1316 | at $Proxy89.setPixelsId_async(Unknown Source) |
|---|
| 1317 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:288) |
|---|
| 1318 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:389) |
|---|
| 1319 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1338) |
|---|
| 1320 | at IceInternal.Incoming.invoke(Incoming.java:159) |
|---|
| 1321 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
|---|
| 1322 | at Ice.ConnectionI.message(ConnectionI.java:972) |
|---|
| 1323 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
|---|
| 1324 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
|---|
| 1325 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
|---|
| 1326 | " |
|---|
| 1327 | serverExceptionClass = "ome.conditions.ValidationException" |
|---|
| 1328 | message = "Cannot read pixels id=623" |
|---|
| 1329 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
|---|
| 1330 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
|---|
| 1331 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
|---|
| 1332 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
|---|
| 1333 | at java.lang.Class.newInstance0(Class.java:357) |
|---|
| 1334 | at java.lang.Class.newInstance(Class.java:310) |
|---|
| 1335 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
|---|
| 1336 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
|---|
| 1337 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
|---|
| 1338 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1604) |
|---|
| 1339 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2226) |
|---|
| 1340 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2198) |
|---|
| 1341 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8402) |
|---|
| 1342 | ... 9 more |
|---|
| 1343 | Exception in thread "AWT-EventQueue-0" |
|---|
| 1344 | |
|---|
| 1345 | 2013-06-11 12:09:31,279 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape on coord T: 0 Z: 0 |
|---|
| 1346 | 2013-06-11 12:10:05,653 INFO [opy.shoola.env.rnd.PixelsServicesFactory] (1-thread-1) Rendering Engine shut down: PixelsID 623 |
|---|
| 1347 | 2013-06-11 12:18:02,100 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
|---|
| 1348 | Cannot start the Raw pixels store. |
|---|
| 1349 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:934) |
|---|
| 1350 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8407) |
|---|
| 1351 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1823) |
|---|
| 1352 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
|---|
| 1353 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
|---|
| 1354 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
|---|
| 1355 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
|---|
| 1356 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
|---|
| 1357 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
|---|
| 1358 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
|---|
| 1359 | at java.lang.Thread.run(Thread.java:680) |
|---|
| 1360 | Caused by: omero.ValidationException |
|---|
| 1361 | serverStackTrace = "ome.conditions.ValidationException: Cannot read pixels id=661 |
|---|
| 1362 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:276) |
|---|
| 1363 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 1364 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1365 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1366 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1367 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1368 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1369 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
|---|
| 1370 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1371 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) |
|---|
| 1372 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) |
|---|
| 1373 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1374 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
|---|
| 1375 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1376 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
|---|
| 1377 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1378 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
|---|
| 1379 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1380 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1381 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 1382 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 1383 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1384 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1385 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1386 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1387 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1388 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
|---|
| 1389 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1390 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
|---|
| 1391 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1392 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1393 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 1394 | at sun.reflect.GeneratedMethodAccessor1528.invoke(Unknown Source) |
|---|
| 1395 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1396 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1397 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
|---|
| 1398 | at ome.services.throttling.Callback.run(Callback.java:56) |
|---|
| 1399 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
|---|
| 1400 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
|---|
| 1401 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) |
|---|
| 1402 | at sun.reflect.GeneratedMethodAccessor1527.invoke(Unknown Source) |
|---|
| 1403 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1404 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1405 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1406 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1407 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1408 | at omero.cmd.CallContext.invoke(CallContext.java:65) |
|---|
| 1409 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1410 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1411 | at $Proxy89.setPixelsId_async(Unknown Source) |
|---|
| 1412 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:288) |
|---|
| 1413 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:389) |
|---|
| 1414 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1338) |
|---|
| 1415 | at IceInternal.Incoming.invoke(Incoming.java:159) |
|---|
| 1416 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
|---|
| 1417 | at Ice.ConnectionI.message(ConnectionI.java:972) |
|---|
| 1418 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
|---|
| 1419 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
|---|
| 1420 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
|---|
| 1421 | " |
|---|
| 1422 | serverExceptionClass = "ome.conditions.ValidationException" |
|---|
| 1423 | message = "Cannot read pixels id=661" |
|---|
| 1424 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
|---|
| 1425 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
|---|
| 1426 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
|---|
| 1427 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
|---|
| 1428 | at java.lang.Class.newInstance0(Class.java:357) |
|---|
| 1429 | at java.lang.Class.newInstance(Class.java:310) |
|---|
| 1430 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
|---|
| 1431 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
|---|
| 1432 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
|---|
| 1433 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1604) |
|---|
| 1434 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2226) |
|---|
| 1435 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2198) |
|---|
| 1436 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8402) |
|---|
| 1437 | ... 9 more |
|---|
| 1438 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
|---|
| 1439 | Cannot start the Raw pixels store. |
|---|
| 1440 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:934) |
|---|
| 1441 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8407) |
|---|
| 1442 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1823) |
|---|
| 1443 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
|---|
| 1444 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
|---|
| 1445 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
|---|
| 1446 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
|---|
| 1447 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
|---|
| 1448 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
|---|
| 1449 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
|---|
| 1450 | at java.lang.Thread.run(Thread.java:680) |
|---|
| 1451 | Caused by: omero.ValidationException |
|---|
| 1452 | serverStackTrace = "ome.conditions.ValidationException: Cannot read pixels id=661 |
|---|
| 1453 | at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:276) |
|---|
| 1454 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 1455 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1456 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1457 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1458 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1459 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1460 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
|---|
| 1461 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1462 | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) |
|---|
| 1463 | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) |
|---|
| 1464 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1465 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
|---|
| 1466 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1467 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
|---|
| 1468 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1469 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
|---|
| 1470 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1471 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1472 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 1473 | at sun.reflect.GeneratedMethodAccessor1494.invoke(Unknown Source) |
|---|
| 1474 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1475 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1476 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1477 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1478 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1479 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
|---|
| 1480 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1481 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
|---|
| 1482 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1483 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1484 | at $Proxy88.setPixelsId(Unknown Source) |
|---|
| 1485 | at sun.reflect.GeneratedMethodAccessor1528.invoke(Unknown Source) |
|---|
| 1486 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1487 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1488 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
|---|
| 1489 | at ome.services.throttling.Callback.run(Callback.java:56) |
|---|
| 1490 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
|---|
| 1491 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
|---|
| 1492 | at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) |
|---|
| 1493 | at sun.reflect.GeneratedMethodAccessor1527.invoke(Unknown Source) |
|---|
| 1494 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) |
|---|
| 1495 | at java.lang.reflect.Method.invoke(Method.java:592) |
|---|
| 1496 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
|---|
| 1497 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
|---|
| 1498 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
|---|
| 1499 | at omero.cmd.CallContext.invoke(CallContext.java:65) |
|---|
| 1500 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
|---|
| 1501 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
|---|
| 1502 | at $Proxy89.setPixelsId_async(Unknown Source) |
|---|
| 1503 | at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:288) |
|---|
| 1504 | at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:389) |
|---|
| 1505 | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1338) |
|---|
| 1506 | at IceInternal.Incoming.invoke(Incoming.java:159) |
|---|
| 1507 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
|---|
| 1508 | at Ice.ConnectionI.message(ConnectionI.java:972) |
|---|
| 1509 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
|---|
| 1510 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
|---|
| 1511 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
|---|
| 1512 | " |
|---|
| 1513 | serverExceptionClass = "ome.conditions.ValidationException" |
|---|
| 1514 | message = "Cannot read pixels id=661" |
|---|
| 1515 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
|---|
| 1516 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
|---|
| 1517 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
|---|
| 1518 | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
|---|
| 1519 | at java.lang.Class.newInstance0(Class.java:357) |
|---|
| 1520 | at java.lang.Class.newInstance(Class.java:310) |
|---|
| 1521 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
|---|
| 1522 | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
|---|
| 1523 | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
|---|
| 1524 | at omero.api._RawPixelsStoreDelM.setPixelsId(_RawPixelsStoreDelM.java:1604) |
|---|
| 1525 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2226) |
|---|
| 1526 | at omero.api.RawPixelsStorePrxHelper.setPixelsId(RawPixelsStorePrxHelper.java:2198) |
|---|
| 1527 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8402) |
|---|
| 1528 | ... 9 more |
|---|
| 1529 | Exception in thread "AWT-EventQueue-0" |
|---|
| 1530 | |
|---|
| 1531 | 2013-06-11 12:18:59,990 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape on coord T: 0 Z: 0 |
|---|
| 1532 | 2013-06-11 12:23:35,589 INFO [opy.shoola.env.rnd.PixelsServicesFactory] (1-thread-1) Rendering Engine shut down: PixelsID 728 |
|---|
