Ticket #11949: heap_oom_err.txt

File heap_oom_err.txt, 4.4 KB (added by jballanco-x, 6 years ago)

Stack trace from an Out Of Memory error in omero.indexer

Line 
1ome.conditions.InternalException:  Wrapped Exception: (java.lang.OutOfMemoryError):
2Java heap space
3        at java.io.BufferedReader.<init>(BufferedReader.java:98) ~[na:1.7.0_45]
4        at java.io.BufferedReader.<init>(BufferedReader.java:109) ~[na:1.7.0_45]
5        at ome.services.fulltext.FileParser.doParse(FileParser.java:132) ~[server.jar:na]
6        at ome.services.fulltext.FileParser.parse(FileParser.java:100) ~[server.jar:na]
7        at ome.services.fulltext.BridgeHelper.parse(BridgeHelper.java:262) ~[server.jar:na]
8        at ome.services.fulltext.BridgeHelper.addContents(BridgeHelper.java:208) ~[server.jar:na]
9        at ome.services.fulltext.FullTextBridge.handleFileAnnotation(FullTextBridge.java:354) ~[server.jar:na]
10        at ome.services.fulltext.FullTextBridge.set_annotations(FullTextBridge.java:208) ~[server.jar:na]
11        at ome.services.fulltext.FullTextBridge.set(FullTextBridge.java:124) ~[server.jar:na]
12        at ome.util.DetailsFieldBridge.set(DetailsFieldBridge.java:49) ~[model-psql.jar:na]
13        at org.hibernate.search.engine.DocumentBuilderIndexedEntity.buildDocumentFields(DocumentBuilderIndexedEntity.java:396) ~[hibernate-search.jar:3.1.1.GA]
14        at org.hibernate.search.engine.DocumentBuilderIndexedEntity.getDocument(DocumentBuilderIndexedEntity.java:380) ~[hibernate-search.jar:3.1.1.GA]
15        at org.hibernate.search.engine.DocumentBuilderIndexedEntity.createAddWork(DocumentBuilderIndexedEntity.java:328) ~[hibernate-search.jar:3.1.1.GA]
16        at org.hibernate.search.engine.DocumentBuilderIndexedEntity.addWorkToQueue(DocumentBuilderIndexedEntity.java:317) ~[hibernate-search.jar:3.1.1.GA]
17        at org.hibernate.search.backend.impl.BatchedQueueingProcessor.addWorkToBuilderQueue(BatchedQueueingProcessor.java:153) ~[hibernate-search.jar:3.1.1.GA]
18        at org.hibernate.search.backend.impl.BatchedQueueingProcessor.processWorkByLayer(BatchedQueueingProcessor.java:140) ~[hibernate-search.jar:3.1.1.GA]
19        at org.hibernate.search.backend.impl.BatchedQueueingProcessor.prepareWorks(BatchedQueueingProcessor.java:128) ~[hibernate-search.jar:3.1.1.GA]
20        at org.hibernate.search.backend.impl.BatchedQueueingProcessor.add(BatchedQueueingProcessor.java:111) ~[hibernate-search.jar:3.1.1.GA]
21        at org.hibernate.search.backend.impl.PostTransactionWorkQueueSynchronization.add(PostTransactionWorkQueueSynchronization.java:39) ~[hibernate-search.jar:3.1.1.GA]
22        at org.hibernate.search.backend.impl.TransactionalWorker.performWork(TransactionalWorker.java:50) ~[hibernate-search.jar:3.1.1.GA]
23        at org.hibernate.search.impl.FullTextSessionImpl.index(FullTextSessionImpl.java:153) ~[hibernate-search.jar:3.1.1.GA]
24        at ome.services.fulltext.FullTextIndexer$Index.go(FullTextIndexer.java:97) ~[server.jar:na]
25        at ome.services.fulltext.FullTextIndexer.doIndexing(FullTextIndexer.java:218) ~[server.jar:na]
26        at ome.services.fulltext.FullTextIndexer.doIndexingWithWorldRead(FullTextIndexer.java:176) ~[server.jar:na]
27        at ome.services.fulltext.FullTextIndexer.doWork(FullTextIndexer.java:163) ~[server.jar:na]
28        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.7.0_45]
29        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) ~[na:1.7.0_45]
30        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_45]
31        at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_45]
32        at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
33        at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
34        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
352014-01-29 12:38:57,322 ERROR [             org.quartz.core.ErrorLogger] (3-thread-5) Job (DEFAULT.fullTextThreadRun threw an exception.
36org.quartz.SchedulerException: Job threw an unhandled exception.
37        at org.quartz.core.JobRunShell.run(JobRunShell.java:214) ~[quartz.jar:1.5.2]
38        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) [na:1.7.0_45]
39        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) [na:1.7.0_45]
40        at java.lang.Thread.run(Thread.java:744) [na:1.7.0_45]
41

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