| 1 | java.io.FileNotFoundException: /Users/jballanc/Data/OMERO.data/Files/Dir-001/1353 (Too many open files in system) |
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| 2 | at java.io.FileInputStream.open(Native Method) ~[na:1.7.0_45] |
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| 3 | at java.io.FileInputStream.<init>(FileInputStream.java:146) ~[na:1.7.0_45] |
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| 4 | at java.io.FileReader.<init>(FileReader.java:72) ~[na:1.7.0_45] |
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| 5 | at ome.services.fulltext.FileParser.doParse(FileParser.java:131) ~[server.jar:na] |
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| 6 | at ome.services.fulltext.FileParser.parse(FileParser.java:100) ~[server.jar:na] |
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| 7 | at ome.services.fulltext.BridgeHelper.parse(BridgeHelper.java:262) [server.jar:na] |
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| 8 | at ome.services.fulltext.BridgeHelper.addContents(BridgeHelper.java:199) [server.jar:na] |
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| 9 | at ome.services.fulltext.FullTextBridge.handleFileAnnotation(FullTextBridge.java:354) [server.jar:na] |
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| 10 | at ome.services.fulltext.FullTextBridge.set_annotations(FullTextBridge.java:208) [server.jar:na] |
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| 11 | at ome.services.fulltext.FullTextBridge.set(FullTextBridge.java:124) [server.jar:na] |
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| 12 | at ome.util.DetailsFieldBridge.set(DetailsFieldBridge.java:49) [model-psql.jar:na] |
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| 13 | at org.hibernate.search.engine.DocumentBuilderIndexedEntity.buildDocumentFields(DocumentBuilderIndexedEntity.java:396) [hibernate-search.jar:3.1.1.GA] |
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| 14 | at org.hibernate.search.engine.DocumentBuilderIndexedEntity.getDocument(DocumentBuilderIndexedEntity.java:380) [hibernate-search.jar:3.1.1.GA] |
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| 15 | at org.hibernate.search.engine.DocumentBuilderIndexedEntity.createAddWork(DocumentBuilderIndexedEntity.java:328) [hibernate-search.jar:3.1.1.GA] |
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| 16 | at org.hibernate.search.engine.DocumentBuilderIndexedEntity.addWorkToQueue(DocumentBuilderIndexedEntity.java:317) [hibernate-search.jar:3.1.1.GA] |
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| 17 | at org.hibernate.search.backend.impl.BatchedQueueingProcessor.addWorkToBuilderQueue(BatchedQueueingProcessor.java:153) [hibernate-search.jar:3.1.1.GA] |
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| 18 | at org.hibernate.search.backend.impl.BatchedQueueingProcessor.processWorkByLayer(BatchedQueueingProcessor.java:140) [hibernate-search.jar:3.1.1.GA] |
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| 19 | at org.hibernate.search.backend.impl.BatchedQueueingProcessor.prepareWorks(BatchedQueueingProcessor.java:128) [hibernate-search.jar:3.1.1.GA] |
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| 20 | at org.hibernate.search.backend.impl.BatchedQueueingProcessor.add(BatchedQueueingProcessor.java:111) [hibernate-search.jar:3.1.1.GA] |
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| 21 | at org.hibernate.search.backend.impl.PostTransactionWorkQueueSynchronization.add(PostTransactionWorkQueueSynchronization.java:39) [hibernate-search.jar:3.1.1.GA] |
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| 22 | at org.hibernate.search.backend.impl.TransactionalWorker.performWork(TransactionalWorker.java:50) [hibernate-search.jar:3.1.1.GA] |
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| 23 | at org.hibernate.search.impl.FullTextSessionImpl.index(FullTextSessionImpl.java:153) [hibernate-search.jar:3.1.1.GA] |
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| 24 | at ome.services.fulltext.FullTextIndexer$Index.go(FullTextIndexer.java:97) [server.jar:na] |
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| 25 | at ome.services.fulltext.FullTextIndexer.doIndexing(FullTextIndexer.java:218) [server.jar:na] |
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| 26 | at ome.services.fulltext.FullTextIndexer.doIndexingWithWorldRead(FullTextIndexer.java:176) [server.jar:na] |
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| 27 | at ome.services.fulltext.FullTextIndexer.doWork(FullTextIndexer.java:163) [server.jar:na] |
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| 28 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.7.0_45] |
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| 29 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) ~[na:1.7.0_45] |
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| 30 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_45] |
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| 31 | at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_45] |
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| 32 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) [org.springframework.aop.jar:3.0.1.RELEASE-A] at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) [org.springframework.aop.jar:3.0.1.RELEASE-A] |
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| 33 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) [org.springframework.aop.jar:3.0.1.RELEASE-A] |
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| 34 | at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:576) [server.jar:na] |
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| 35 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) [org.springframework.aop.jar:3.0.1.RELEASE-A] |
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| 36 | at ome.security.basic.NullEventHandler.invoke(NullEventHandler.java:39) [server.jar:na] |
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| 37 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) [org.springframework.aop.jar:3.0.1.RELEASE-A] |
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| 38 | at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) [org.springframework.orm.jar:3.0.1.RELEASE-A] |
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| 39 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) [org.springframework.aop.jar:3.0.1.RELEASE-A] at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) [org.springframework.transaction.jar:3.0.1.RELEASE-A] |
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| 40 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) [org.springframework.aop.jar:3.0.1.RELEASE-A] |
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| 41 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) [server.jar:na] |
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| 42 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) [org.springframework.aop.jar:3.0.1.RELEASE-A] |
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| 43 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) [server.jar:na] |
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| 44 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) [org.springframework.aop.jar:3.0.1.RELEASE-A] |
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| 45 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) [org.springframework.aop.jar:3.0.1.RELEASE-A] |
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| 46 | at com.sun.proxy.$Proxy68.doWork(Unknown Source) [na:na] |
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| 47 | at ome.services.util.Executor$Impl.execute(Executor.java:457) [server.jar:na] |
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| 48 | at ome.services.fulltext.FullTextThread.doRun(FullTextThread.java:141) [server.jar:na] |
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| 49 | at ome.services.util.ExecutionThread.run(ExecutionThread.java:58) [server.jar:na] |
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| 50 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.7.0_45] |
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| 51 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) ~[na:1.7.0_45] |
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| 52 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_45] |
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| 53 | at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_45] |
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| 54 | at org.springframework.util.MethodInvoker.invoke(MethodInvoker.java:273) [org.springframework.core.jar:3.0.1.RELEASE-A] |
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| 55 | at org.springframework.scheduling.quartz.MethodInvokingJobDetailFactoryBean$MethodInvokingJob.executeInternal(MethodInvokingJobDetailFactoryBean.java:264) [org.springframework.context.support.jar:3.0.1.RELEASE-A] |
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| 56 | at org.springframework.scheduling.quartz.QuartzJobBean.execute(QuartzJobBean.java:86) [org.springframework.context.support.jar:3.0.1.RELEASE-A] |
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| 57 | at org.quartz.core.JobRunShell.run(JobRunShell.java:203) [quartz.jar:1.5.2] |
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| 58 | at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) [na:1.7.0_45] |
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| 59 | at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) [na:1.7.0_45] |
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| 60 | at java.lang.Thread.run(Thread.java:744) [na:1.7.0_45] |
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