1 | os_name: Mac OS X |
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2 | os_arch: x86_64 |
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3 | java_version: 1.6.0_65 |
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4 | os_version: 10.8.5 |
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5 | |
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6 | 2014-02-21 15:55:34,255 DEBUG [ o.o.shoola.util.NetworkChecker] (nitializer) Cached networkup: true |
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7 | 2014-02-21 15:55:34,341 DEBUG [ o.o.shoola.util.NetworkChecker] (nitializer) Cached networkup: true |
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8 | 2014-02-21 15:55:34,351 INFO [ o.o.s.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: localhost |
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9 | User Name: user-2 -- Password: *** |
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10 | |
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11 | 2014-02-21 15:55:35,658 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-15) Cached networkup: true |
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12 | 2014-02-21 15:55:35,813 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-16) Cached networkup: true |
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13 | 2014-02-21 15:55:43,992 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Count: 2 2 |
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14 | 2014-02-21 15:55:43,992 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Network status: true (in 1 ms.) use cached value: true |
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15 | 2014-02-21 15:56:06,345 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-17) Count: 2 2 |
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16 | 2014-02-21 15:56:06,345 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-17) Network status: true (in 0 ms.) use cached value: true |
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17 | 2014-02-21 15:56:06,348 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-18) Cached networkup: true |
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18 | 2014-02-21 15:56:18,913 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-31) Count: 2 2 |
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19 | 2014-02-21 15:56:18,913 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-31) Network status: true (in 1 ms.) use cached value: true |
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20 | 2014-02-21 15:56:18,915 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-32) Cached networkup: true |
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21 | 2014-02-21 15:56:18,940 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-33) Cached networkup: true |
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22 | 2014-02-21 15:56:18,940 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-31) Cached networkup: true |
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23 | 2014-02-21 15:56:19,009 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-34) Cached networkup: true |
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24 | 2014-02-21 15:56:20,560 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-35) Cached networkup: true |
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25 | 2014-02-21 15:56:20,563 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-36) Cached networkup: true |
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26 | 2014-02-21 15:56:21,895 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-37) Cached networkup: true |
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27 | 2014-02-21 15:56:21,900 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-38) Cached networkup: true |
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28 | 2014-02-21 15:56:22,357 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Cached networkup: true |
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29 | 2014-02-21 15:56:22,368 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Cached networkup: true |
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30 | 2014-02-21 15:56:22,372 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Cached networkup: true |
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31 | 2014-02-21 15:56:22,375 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Cached networkup: true |
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32 | 2014-02-21 15:56:22,519 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-41) Cached networkup: true |
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33 | 2014-02-21 15:56:22,520 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-40) Cached networkup: true |
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34 | 2014-02-21 15:56:22,523 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-39) Cached networkup: true |
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35 | 2014-02-21 15:56:22,523 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-42) Cached networkup: true |
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36 | 2014-02-21 15:56:24,019 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-44) Count: 2 2 |
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37 | 2014-02-21 15:56:24,019 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-44) Network status: true (in 1 ms.) use cached value: true |
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38 | 2014-02-21 15:56:24,025 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-45) Cached networkup: true |
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39 | 2014-02-21 15:56:24,157 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Cached networkup: true |
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40 | 2014-02-21 15:56:24,161 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Cached networkup: true |
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41 | 2014-02-21 15:56:24,164 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Cached networkup: true |
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42 | 2014-02-21 15:56:24,168 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Cached networkup: true |
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43 | 2014-02-21 15:56:24,197 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-46) Cached networkup: true |
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44 | 2014-02-21 15:56:24,198 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-47) Cached networkup: true |
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45 | 2014-02-21 15:56:24,207 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-48) Cached networkup: true |
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46 | 2014-02-21 15:56:24,211 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-49) Cached networkup: true |
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47 | 2014-02-21 15:56:29,509 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-50) Count: 2 2 |
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48 | 2014-02-21 15:56:29,509 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-50) Network status: true (in 0 ms.) use cached value: true |
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49 | 2014-02-21 15:56:29,517 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-54) Cached networkup: true |
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50 | 2014-02-21 15:56:29,546 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-58) Cached networkup: true |
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51 | 2014-02-21 15:56:29,722 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-71) Cached networkup: true |
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52 | 2014-02-21 15:56:32,925 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-72) Cached networkup: true |
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53 | 2014-02-21 15:56:33,945 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-73) Cached networkup: true |
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54 | 2014-02-21 15:56:34,257 DEBUG [ o.o.shoola.util.NetworkChecker] (2-thread-1) Count: 2 2 |
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55 | 2014-02-21 15:56:34,257 DEBUG [ o.o.shoola.util.NetworkChecker] (2-thread-1) Network status: true (in 1 ms.) use cached value: false |
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56 | 2014-02-21 15:56:34,993 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-74) Cached networkup: true |
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57 | 2014-02-21 15:56:36,352 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-75) Cached networkup: true |
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58 | 2014-02-21 15:56:36,352 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-76) Cached networkup: true |
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59 | 2014-02-21 15:56:44,396 INFO [ ome.formats.importer.ImportConfig] ( Thread-77) OMERO Version: 5.0.0-rc4-20-4561d5d-ice33-b591 |
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60 | 2014-02-21 15:56:44,397 INFO [ ome.formats.importer.ImportConfig] ( Thread-77) Bioformats version: 5.0.0-rc4-20-4561d5d-ice33-b591 revision: 931c076 date: 21 February 2014 |
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61 | 2014-02-21 15:56:44,410 INFO [ ome.formats.importer.ImportCandidates] ( Thread-77) Depth: 4 Metadata Level: MINIMUM |
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62 | 2014-02-21 15:56:46,534 INFO [ loci.formats.ImageReader] ( Thread-77) JPEGReader initializing /Volumes/ome/data_repo/test_images_good/hamamatsu-vms/openslide/CMU-1/CMU-1-40x - 2010-01-12 13.24.05(0,1).jpg |
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63 | 2014-02-21 15:56:46,541 INFO [ loci.formats.FormatHandler] ( Thread-77) Populating metadata |
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64 | 2014-02-21 15:56:48,922 INFO [ loci.formats.ImageReader] ( Thread-77) JPEGReader initializing /Volumes/ome/data_repo/test_images_good/hamamatsu-vms/openslide/CMU-1/CMU-1-40x - 2010-01-12 13.24.05(1,0).jpg |
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65 | 2014-02-21 15:56:48,922 INFO [ loci.formats.FormatHandler] ( Thread-77) Populating metadata |
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66 | 2014-02-21 15:56:51,257 INFO [ loci.formats.ImageReader] ( Thread-77) JPEGReader initializing /Volumes/ome/data_repo/test_images_good/hamamatsu-vms/openslide/CMU-1/CMU-1-40x - 2010-01-12 13.24.05(1,1).jpg |
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67 | 2014-02-21 15:56:51,258 INFO [ loci.formats.FormatHandler] ( Thread-77) Populating metadata |
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68 | 2014-02-21 15:56:53,356 INFO [ loci.formats.ImageReader] ( Thread-77) JPEGReader initializing /Volumes/ome/data_repo/test_images_good/hamamatsu-vms/openslide/CMU-1/CMU-1-40x - 2010-01-12 13.24.05.jpg |
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69 | 2014-02-21 15:56:53,356 INFO [ loci.formats.FormatHandler] ( Thread-77) Populating metadata |
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70 | 2014-02-21 15:57:11,455 INFO [ loci.formats.ImageReader] ( Thread-77) HamamatsuVMSReader initializing /Volumes/ome/data_repo/test_images_good/hamamatsu-vms/openslide/CMU-1/CMU-1-40x - 2010-01-12 13.24.05.vms |
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71 | 2014-02-21 15:57:11,953 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Count: 2 2 |
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72 | 2014-02-21 15:57:11,954 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Network status: true (in 1 ms.) use cached value: true |
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73 | 2014-02-21 15:57:12,919 INFO [ ome.formats.importer.ImportCandidates] ( Thread-77) 17 file(s) parsed into 1 group(s) with 6 call(s) to setId in 28477ms. (28510ms total) [1 unknowns] |
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74 | 2014-02-21 15:57:12,926 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-77) Cached networkup: true |
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75 | 2014-02-21 15:57:12,957 INFO [ ome.formats.importer.ImportConfig] ( Thread-77) OMERO Version: 5.0.0-rc4-20-4561d5d-ice33-b591 |
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76 | 2014-02-21 15:57:12,957 INFO [ ome.formats.importer.ImportConfig] ( Thread-77) Bioformats version: 5.0.0-rc4-20-4561d5d-ice33-b591 revision: 931c076 date: 21 February 2014 |
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77 | 2014-02-21 15:57:12,958 INFO [ ome.formats.importer.ImportCandidates] ( Thread-77) Depth: 4 Metadata Level: MINIMUM |
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78 | 2014-02-21 15:57:13,074 INFO [ loci.formats.ImageReader] ( Thread-77) HamamatsuVMSReader initializing /Volumes/ome/data_repo/test_images_good/hamamatsu-vms/openslide/CMU-1/CMU-1-40x - 2010-01-12 13.24.05.vms |
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79 | 2014-02-21 15:57:13,929 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Cached networkup: true |
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80 | 2014-02-21 15:57:14,056 INFO [ ome.formats.importer.ImportCandidates] ( Thread-77) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 1097ms. (1098ms total) [0 unknowns] |
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81 | 2014-02-21 15:57:14,056 INFO [ ome.formats.importer.ImportConfig] ( Thread-77) OMERO Version: 5.0.0-rc4-20-4561d5d-ice33-b591 |
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82 | 2014-02-21 15:57:14,056 INFO [ ome.formats.importer.ImportConfig] ( Thread-77) Bioformats version: 5.0.0-rc4-20-4561d5d-ice33-b591 revision: 931c076 date: 21 February 2014 |
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83 | 2014-02-21 15:57:14,057 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-77) Cached networkup: true |
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84 | 2014-02-21 15:57:14,329 INFO [ ome.formats.importer.ImportConfig] ( Thread-77) OMERO Version: 5.0.0-rc4-20-4561d5d-ice33-b591 |
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85 | 2014-02-21 15:57:14,329 INFO [ ome.formats.importer.ImportConfig] ( Thread-77) Bioformats version: 5.0.0-rc4-20-4561d5d-ice33-b591 revision: 931c076 date: 21 February 2014 |
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86 | 2014-02-21 15:57:14,754 INFO [ o.f.i.transfers.UploadFileTransfer] ( Thread-77) Transferring /Volumes/ome/data_repo/test_images_good/hamamatsu-vms/openslide/CMU-1/CMU-1-40x - 2010-01-12 13.24.05.vms... |
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87 | 2014-02-21 15:57:14,833 INFO [ o.f.i.transfers.UploadFileTransfer] ( Thread-77) Transferring /Volumes/ome/data_repo/test_images_good/hamamatsu-vms/openslide/CMU-1/CMU-1-40x - 2010-01-12 13.24.05.jpg... |
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88 | 2014-02-21 15:57:34,262 DEBUG [ o.o.shoola.util.NetworkChecker] (2-thread-1) Count: 2 2 |
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89 | 2014-02-21 15:57:34,262 DEBUG [ o.o.shoola.util.NetworkChecker] (2-thread-1) Network status: true (in 1 ms.) use cached value: false |
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90 | 2014-02-21 15:57:35,156 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-85) Cached networkup: true |
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91 | 2014-02-21 15:57:35,156 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-84) Cached networkup: true |
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92 | 2014-02-21 15:58:16,241 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-86) Count: 2 2 |
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93 | 2014-02-21 15:58:16,241 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-86) Network status: true (in 0 ms.) use cached value: true |
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94 | 2014-02-21 15:58:16,245 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-88) Cached networkup: true |
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95 | 2014-02-21 15:58:16,283 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-94) Cached networkup: true |
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96 | 2014-02-21 15:58:16,449 DEBUG [ o.o.shoola.util.NetworkChecker] (Thread-107) Cached networkup: true |
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97 | 2014-02-21 15:58:17,848 DEBUG [ o.o.shoola.util.NetworkChecker] (Thread-108) Cached networkup: true |
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98 | 2014-02-21 15:58:17,853 DEBUG [ o.o.shoola.util.NetworkChecker] (Thread-109) Cached networkup: true |
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99 | 2014-02-21 15:58:17,862 DEBUG [ o.o.shoola.util.NetworkChecker] (Thread-108) Cached networkup: true |
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100 | 2014-02-21 15:58:17,871 DEBUG [ o.o.shoola.util.NetworkChecker] (Thread-110) Cached networkup: true |
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101 | 2014-02-21 15:58:17,921 DEBUG [ o.o.shoola.util.NetworkChecker] (Thread-111) Cached networkup: true |
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102 | 2014-02-21 15:58:24,159 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Count: 2 2 |
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103 | 2014-02-21 15:58:24,159 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Network status: true (in 0 ms.) use cached value: true |
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104 | 2014-02-21 15:58:25,527 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Cached networkup: true |
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105 | 2014-02-21 15:58:26,659 ERROR [ o.f.i.transfers.UploadFileTransfer] ( Thread-77) error in closing raw file store |
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106 | Ice.CommunicatorDestroyedException: null |
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107 | at IceInternal.Instance.objectAdapterFactory(Instance.java:122) ~[ice.jar:na] |
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108 | at Ice.ObjectPrxHelperBase.createDelegate(ObjectPrxHelperBase.java:997) ~[ice.jar:na] |
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109 | at Ice.ObjectPrxHelperBase.__getDelegate(ObjectPrxHelperBase.java:946) ~[ice.jar:na] |
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110 | at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:661) ~[blitz.jar:na] |
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111 | at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:635) ~[blitz.jar:na] |
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112 | at ome.formats.importer.transfers.AbstractFileTransfer.cleanupUpload(AbstractFileTransfer.java:123) ~[blitz.jar:na] |
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113 | at ome.formats.importer.transfers.UploadFileTransfer.transfer(UploadFileTransfer.java:87) [blitz.jar:na] |
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114 | at ome.formats.importer.ImportLibrary.uploadFile(ImportLibrary.java:406) [blitz.jar:na] |
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115 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageFile(OMEROGateway.java:6325) [omero.insight.jar:na] |
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116 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:236) [omero.insight.jar:na] |
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117 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1352) [omero.insight.jar:na] |
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118 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:77) [omero.insight.jar:na] |
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119 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:53) [omero.insight.jar:na] |
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120 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:102) [omero.insight.jar:na] |
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121 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) [omero.insight.jar:na] |
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122 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) [omero.insight.jar:na] |
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123 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) [omero.insight.jar:na] |
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124 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) [omero.insight.jar:na] |
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125 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) [omero.insight.jar:na] |
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126 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) [omero.insight.jar:na] |
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127 | at java.lang.Thread.run(Thread.java:695) [na:1.6.0_65] |
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128 | 2014-02-21 15:58:26,683 DEBUG [ o.o.shoola.env.data.DataServicesFactory] ( Thread-77) Connection ErrorIce.CommunicatorDestroyedException |
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129 | at IceInternal.Instance.objectAdapterFactory(Instance.java:122) |
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130 | at Ice.ObjectPrxHelperBase.createDelegate(ObjectPrxHelperBase.java:997) |
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131 | at Ice.ObjectPrxHelperBase.__getDelegate(ObjectPrxHelperBase.java:946) |
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132 | at omero.api.RawFileStorePrxHelper.write(RawFileStorePrxHelper.java:523) |
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133 | at omero.api.RawFileStorePrxHelper.write(RawFileStorePrxHelper.java:497) |
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134 | at ome.formats.importer.transfers.UploadFileTransfer.transfer(UploadFileTransfer.java:79) |
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135 | at ome.formats.importer.ImportLibrary.uploadFile(ImportLibrary.java:406) |
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136 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageFile(OMEROGateway.java:6325) |
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137 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:236) |
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138 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1352) |
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139 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:77) |
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140 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:53) |
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141 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:102) |
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142 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
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143 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
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144 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
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145 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
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146 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
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147 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
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148 | at java.lang.Thread.run(Thread.java:695) |
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149 | Connection ErrorIce.CommunicatorDestroyedException |
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150 | at IceInternal.Instance.objectAdapterFactory(Instance.java:122) |
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151 | at Ice.ObjectPrxHelperBase.createDelegate(ObjectPrxHelperBase.java:997) |
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152 | at Ice.ObjectPrxHelperBase.__getDelegate(ObjectPrxHelperBase.java:946) |
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153 | at omero.api.RawFileStorePrxHelper.write(RawFileStorePrxHelper.java:523) |
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154 | at omero.api.RawFileStorePrxHelper.write(RawFileStorePrxHelper.java:497) |
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155 | at ome.formats.importer.transfers.UploadFileTransfer.transfer(UploadFileTransfer.java:79) |
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156 | at ome.formats.importer.ImportLibrary.uploadFile(ImportLibrary.java:406) |
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157 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageFile(OMEROGateway.java:6325) |
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158 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:236) |
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159 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1352) |
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160 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:77) |
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161 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:53) |
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162 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:102) |
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163 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
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164 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
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165 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
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166 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
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167 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
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168 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
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169 | at java.lang.Thread.run(Thread.java:695) |
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170 | Exception in thread "Thread-77" |
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171 | |
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172 | 2014-02-21 15:58:31,993 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-77) Count: 2 2 |
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173 | 2014-02-21 15:58:31,993 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-77) Network status: true (in 3 ms.) use cached value: true |
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174 | 2014-02-21 15:58:31,993 DEBUG [ o.o.shoola.env.data.OMEROGateway] ( Thread-77) Cannot re-create. Returning null connector |
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175 | 2014-02-21 15:58:31,994 DEBUG [ o.o.shoola.env.data.OMEROGateway] ( Thread-77) Failed to close import: java.lang.NullPointerException |
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176 | 2014-02-21 15:58:31,994 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Count: 2 2 |
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177 | 2014-02-21 15:58:31,994 DEBUG [ o.o.shoola.util.NetworkChecker] (entQueue-0) Network status: true (in 1 ms.) use cached value: false |
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178 | 2014-02-21 15:58:31,994 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-77) Cached networkup: true |
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179 | 2014-02-21 15:58:31,994 DEBUG [ o.o.shoola.env.data.OMEROGateway] ( Thread-77) Cannot re-create. Returning null connector |
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180 | 2014-02-21 15:58:31,994 DEBUG [ o.o.shoola.env.data.OMEROGateway] ( Thread-77) Failed to close import: java.lang.NullPointerException |
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181 | 2014-02-21 15:58:42,634 INFO [o.o.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 1060372480 |
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182 | 2014-02-21 15:58:42,640 INFO [ o.o.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.apple.laf.AquaLookAndFeel |
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183 | 2014-02-21 15:58:44,727 INFO [ o.o.shoola.env.data.DataServicesFactory] (nitializer) Server version: 5.0.0 |
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184 | Client version: 5.0.0-rc4-20-4561d5d-ice33-b591 |
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185 | os_name: Mac OS X |
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186 | os_arch: x86_64 |
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187 | java_version: 1.6.0_65 |
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188 | os_version: 10.8.5 |
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189 | |
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190 | 2014-02-21 15:58:44,730 DEBUG [ o.o.shoola.util.NetworkChecker] (nitializer) Cached networkup: true |
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191 | 2014-02-21 15:58:44,799 DEBUG [ o.o.shoola.util.NetworkChecker] (nitializer) Cached networkup: true |
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192 | 2014-02-21 15:58:44,808 INFO [ o.o.s.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: localhost |
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193 | User Name: user-2 -- Password: *** |
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194 | |
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195 | 2014-02-21 15:58:45,765 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-15) Cached networkup: true |
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196 | 2014-02-21 15:58:45,893 DEBUG [ o.o.shoola.util.NetworkChecker] ( Thread-16) Cached networkup: true |
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197 | 2014-02-21 15:59:44,731 DEBUG [ o.o.shoola.util.NetworkChecker] (2-thread-1) Count: 2 2 |
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198 | 2014-02-21 15:59:44,731 DEBUG [ o.o.shoola.util.NetworkChecker] (2-thread-1) Network status: true (in 1 ms.) use cached value: false |
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199 | 2014-02-21 16:00:44,736 DEBUG [ o.o.shoola.util.NetworkChecker] (2-thread-1) Count: 2 2 |
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200 | 2014-02-21 16:00:44,737 DEBUG [ o.o.shoola.util.NetworkChecker] (2-thread-1) Network status: true (in 1 ms.) use cached value: false |
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201 | 2014-02-21 16:01:44,738 DEBUG [ o.o.shoola.util.NetworkChecker] (2-thread-1) Count: 2 2 |
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202 | 2014-02-21 16:01:44,738 DEBUG [ o.o.shoola.util.NetworkChecker] (2-thread-1) Network status: true (in 0 ms.) use cached value: false |
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203 | 2014-02-21 16:02:44,740 DEBUG [ o.o.shoola.util.NetworkChecker] (2-thread-1) Count: 2 2 |
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204 | 2014-02-21 16:02:44,740 DEBUG [ o.o.shoola.util.NetworkChecker] (2-thread-1) Network status: true (in 1 ms.) use cached value: false |
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205 | 2014-02-21 16:03:44,742 DEBUG [ o.o.shoola.util.NetworkChecker] (2-thread-1) Count: 2 2 |
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206 | 2014-02-21 16:03:44,743 DEBUG [ o.o.shoola.util.NetworkChecker] (2-thread-1) Network status: true (in 1 ms.) use cached value: false |
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207 | 2014-02-21 16:04:44,748 DEBUG [ o.o.shoola.util.NetworkChecker] (2-thread-1) Count: 2 2 |
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208 | 2014-02-21 16:04:44,749 DEBUG [ o.o.shoola.util.NetworkChecker] (2-thread-1) Network status: true (in 1 ms.) use cached value: false |
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