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Ticket #12481: jstack of insight after ROI segmented line excel export freeze.txt

File jstack of insight after ROI segmented line excel export freeze.txt, 16.0 KB (added by dlindner, 10 years ago)
Line 
1[petr@LS25165 ~/Work/ome-internal]$ jstack 1457
21457: No such process
3[petr@LS25165 ~/Work/ome-internal]$ jstack 793
42014-07-21 12:07:28
5Full thread dump Java HotSpot(TM) 64-Bit Server VM (20.65-b04-462 mixed mode):
6
7"Attach Listener" daemon prio=9 tid=11b80b000 nid=0x11ff24000 waiting on condition [00000000]
8   java.lang.Thread.State: RUNNABLE
9
10"Ice.ThreadPool.Client-19" prio=5 tid=122184000 nid=0x11db04000 in Object.wait() [11db03000]
11   java.lang.Thread.State: TIMED_WAITING (on object monitor)
12        at java.lang.Object.wait(Native Method)
13        at IceInternal.ThreadPool.followerWait(ThreadPool.java:573)
14        - locked <7c31ec3b0> (a IceInternal.ThreadPool)
15        at IceInternal.ThreadPool.run(ThreadPool.java:363)
16        - locked <7c31ec3b0> (a IceInternal.ThreadPool)
17        at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
18        at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:693)
19        at java.lang.Thread.run(Thread.java:695)
20
21"Ice.ThreadPool.Client-16" prio=5 tid=11e2cd800 nid=0x117d31000 in Object.wait() [117d30000]
22   java.lang.Thread.State: TIMED_WAITING (on object monitor)
23        at java.lang.Object.wait(Native Method)
24        at IceInternal.ThreadPool.followerWait(ThreadPool.java:573)
25        - locked <7c32474c8> (a IceInternal.ThreadPool)
26        at IceInternal.ThreadPool.run(ThreadPool.java:363)
27        - locked <7c32474c8> (a IceInternal.ThreadPool)
28        at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
29        at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:693)
30        at java.lang.Thread.run(Thread.java:695)
31
32"Thread-8" prio=5 tid=122005800 nid=0x11d033000 waiting for monitor entry [11d032000]
33   java.lang.Thread.State: BLOCKED (on object monitor)
34        at org.openmicroscopy.shoola.env.AbnormalExitHandler.doTermination(AbnormalExitHandler.java:120)
35        - waiting to lock <7c2e64158> (a org.openmicroscopy.shoola.env.AbnormalExitHandler)
36        at org.openmicroscopy.shoola.env.AbnormalExitHandler.terminate(AbnormalExitHandler.java:85)
37        at org.openmicroscopy.shoola.env.RootThreadGroup.uncaughtException(RootThreadGroup.java:69)
38        at java.lang.Thread.dispatchUncaughtException(Thread.java:1913)
39
40"AWT-EventQueue-0" prio=6 tid=11c009800 nid=0x11960d000 waiting for monitor entry [11960b000]
41   java.lang.Thread.State: BLOCKED (on object monitor)
42        at org.openmicroscopy.shoola.env.AbnormalExitHandler.doTermination(AbnormalExitHandler.java:120)
43        - waiting to lock <7c2e64158> (a org.openmicroscopy.shoola.env.AbnormalExitHandler)
44        at org.openmicroscopy.shoola.env.AbnormalExitHandler.terminate(AbnormalExitHandler.java:85)
45        at org.openmicroscopy.shoola.env.AWTExceptionHanlder.handle(AWTExceptionHanlder.java:99)
46        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
47        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
48        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
49        at java.lang.reflect.Method.invoke(Method.java:597)
50        at java.awt.EventDispatchThread.handleException(EventDispatchThread.java:412)
51        at java.awt.EventDispatchThread.processException(EventDispatchThread.java:318)
52        at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:312)
53        at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
54        at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
55        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
56        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
57        at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
58
59"7.data" prio=6 tid=118489000 nid=0x120713000 waiting on condition [120712000]
60   java.lang.Thread.State: TIMED_WAITING (parking)
61        at sun.misc.Unsafe.park(Native Method)
62        - parking to wait for  <7c572f048> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject)
63        at java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:196)
64        at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.awaitNanos(AbstractQueuedSynchronizer.java:2025)
65        at java.util.concurrent.DelayQueue.take(DelayQueue.java:164)
66        at java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(ScheduledThreadPoolExecutor.java:609)
67        at java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(ScheduledThreadPoolExecutor.java:602)
68        at java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:957)
69        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:917)
70        at java.lang.Thread.run(Thread.java:695)
71
72"Ice.ThreadPool.Client-16" prio=5 tid=1136fd800 nid=0x117bbf000 runnable [117bbe000]
73   java.lang.Thread.State: RUNNABLE
74        at sun.nio.ch.KQueueArrayWrapper.kevent0(Native Method)
75        at sun.nio.ch.KQueueArrayWrapper.poll(KQueueArrayWrapper.java:136)
76        at sun.nio.ch.KQueueSelectorImpl.doSelect(KQueueSelectorImpl.java:69)
77        at sun.nio.ch.SelectorImpl.lockAndDoSelect(SelectorImpl.java:69)
78        - locked <7c3225910> (a sun.nio.ch.Util$2)
79        - locked <7c32258f8> (a java.util.Collections$UnmodifiableSet)
80        - locked <7c3566858> (a sun.nio.ch.KQueueSelectorImpl)
81        at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:80)
82        at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:84)
83        at IceInternal.Selector.select(Selector.java:263)
84        at IceInternal.ThreadPool.run(ThreadPool.java:338)
85        at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
86        at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:693)
87        at java.lang.Thread.run(Thread.java:695)
88
89"3.data" prio=6 tid=11c00a000 nid=0x11da01000 waiting on condition [11da00000]
90   java.lang.Thread.State: TIMED_WAITING (parking)
91        at sun.misc.Unsafe.park(Native Method)
92        - parking to wait for  <7c481c8e8> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject)
93        at java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:196)
94        at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.awaitNanos(AbstractQueuedSynchronizer.java:2025)
95        at java.util.concurrent.DelayQueue.take(DelayQueue.java:164)
96        at java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(ScheduledThreadPoolExecutor.java:609)
97        at java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(ScheduledThreadPoolExecutor.java:602)
98        at java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:957)
99        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:917)
100        at java.lang.Thread.run(Thread.java:695)
101
102"pool-1-thread-1" prio=5 tid=106bbf800 nid=0x11cd0d000 waiting on condition [11cd0c000]
103   java.lang.Thread.State: TIMED_WAITING (parking)
104        at sun.misc.Unsafe.park(Native Method)
105        - parking to wait for  <7c3425418> (a java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject)
106        at java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:196)
107        at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.awaitNanos(AbstractQueuedSynchronizer.java:2025)
108        at java.util.concurrent.DelayQueue.take(DelayQueue.java:164)
109        at java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(ScheduledThreadPoolExecutor.java:609)
110        at java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(ScheduledThreadPoolExecutor.java:602)
111        at java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:957)
112        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:917)
113        at java.lang.Thread.run(Thread.java:695)
114
115"Ice.HostResolver" prio=5 tid=11301c000 nid=0x11ca04000 in Object.wait() [11ca03000]
116   java.lang.Thread.State: WAITING (on object monitor)
117        at java.lang.Object.wait(Native Method)
118        - waiting on <7c3557dd0> (a IceInternal.EndpointHostResolver)
119        at java.lang.Object.wait(Object.java:485)
120        at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:167)
121        - locked <7c3557dd0> (a IceInternal.EndpointHostResolver)
122        at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:290)
123
124"Ice.Timer" prio=5 tid=11301b800 nid=0x11c901000 in Object.wait() [11c900000]
125   java.lang.Thread.State: WAITING (on object monitor)
126        at java.lang.Object.wait(Native Method)
127        - waiting on <7c2e4e9b8> (a IceInternal.Timer)
128        at java.lang.Object.wait(Object.java:485)
129        at IceInternal.Timer.run(Timer.java:185)
130        - locked <7c2e4e9b8> (a IceInternal.Timer)
131
132"Ice.ThreadPool.Client-1" prio=5 tid=118187800 nid=0x11b77d000 runnable [11b77c000]
133   java.lang.Thread.State: RUNNABLE
134        at sun.nio.ch.KQueueArrayWrapper.kevent0(Native Method)
135        at sun.nio.ch.KQueueArrayWrapper.poll(KQueueArrayWrapper.java:136)
136        at sun.nio.ch.KQueueSelectorImpl.doSelect(KQueueSelectorImpl.java:69)
137        at sun.nio.ch.SelectorImpl.lockAndDoSelect(SelectorImpl.java:69)
138        - locked <7c314db98> (a sun.nio.ch.Util$2)
139        - locked <7c314dbb0> (a java.util.Collections$UnmodifiableSet)
140        - locked <7c31d4318> (a sun.nio.ch.KQueueSelectorImpl)
141        at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:80)
142        at sun.nio.ch.SelectorImpl.select(SelectorImpl.java:84)
143        at IceInternal.Selector.select(Selector.java:263)
144        at IceInternal.ThreadPool.run(ThreadPool.java:338)
145        at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
146        at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:693)
147        at java.lang.Thread.run(Thread.java:695)
148
149"Ice.HostResolver" prio=5 tid=1119dd800 nid=0x11950a000 in Object.wait() [119509000]
150   java.lang.Thread.State: WAITING (on object monitor)
151        at java.lang.Object.wait(Native Method)
152        - waiting on <7c2f33bf0> (a IceInternal.EndpointHostResolver)
153        at java.lang.Object.wait(Object.java:485)
154        at IceInternal.EndpointHostResolver.run(EndpointHostResolver.java:167)
155        - locked <7c2f33bf0> (a IceInternal.EndpointHostResolver)
156        at IceInternal.EndpointHostResolver$HelperThread.run(EndpointHostResolver.java:290)
157
158"Ice.Timer" prio=5 tid=113049000 nid=0x119407000 in Object.wait() [119406000]
159   java.lang.Thread.State: WAITING (on object monitor)
160        at java.lang.Object.wait(Native Method)
161        - waiting on <7c2e55e90> (a IceInternal.Timer)
162        at java.lang.Object.wait(Object.java:485)
163        at IceInternal.Timer.run(Timer.java:185)
164        - locked <7c2e55e90> (a IceInternal.Timer)
165
166"net.sf.ehcache.CacheManager@69555185" daemon prio=5 tid=111bbb000 nid=0x118f70000 in Object.wait() [118f6f000]
167   java.lang.Thread.State: TIMED_WAITING (on object monitor)
168        at java.lang.Object.wait(Native Method)
169        - waiting on <7c30eebb8> (a java.util.TaskQueue)
170        at java.util.TimerThread.mainLoop(Timer.java:509)
171        - locked <7c30eebb8> (a java.util.TaskQueue)
172        at java.util.TimerThread.run(Timer.java:462)
173
174"TimerQueue" daemon prio=5 tid=10695a000 nid=0x118e6d000 in Object.wait() [118e6c000]
175   java.lang.Thread.State: TIMED_WAITING (on object monitor)
176        at java.lang.Object.wait(Native Method)
177        at javax.swing.TimerQueue.run(TimerQueue.java:232)
178        - locked <7c310c1e0> (a javax.swing.TimerQueue)
179        at java.lang.Thread.run(Thread.java:695)
180
181"AWT-EventQueue-0" prio=6 tid=113040000 nid=0x117a73000 in Object.wait() [117a72000]
182   java.lang.Thread.State: WAITING (on object monitor)
183        at java.lang.Object.wait(Native Method)
184        at java.lang.Thread.join(Thread.java:1225)
185        - locked <7c2f3c900> (a omero.client$1)
186        at java.lang.Thread.join(Thread.java:1278)
187        at java.lang.ApplicationShutdownHooks.runHooks(ApplicationShutdownHooks.java:79)
188        at java.lang.ApplicationShutdownHooks$1.run(ApplicationShutdownHooks.java:24)
189        at java.lang.Shutdown.runHooks(Shutdown.java:79)
190        at java.lang.Shutdown.sequence(Shutdown.java:123)
191        at java.lang.Shutdown.exit(Shutdown.java:168)
192        - locked <7faf9f750> (a java.lang.Class for java.lang.Shutdown)
193        at java.lang.Runtime.exit(Runtime.java:90)
194        at java.lang.System.exit(System.java:920)
195        at org.openmicroscopy.shoola.env.AbnormalExitHandler.doTermination(AbnormalExitHandler.java:120)
196        - locked <7c2e64158> (a org.openmicroscopy.shoola.env.AbnormalExitHandler)
197        at org.openmicroscopy.shoola.env.AbnormalExitHandler.terminate(AbnormalExitHandler.java:85)
198        at org.openmicroscopy.shoola.env.RootThreadGroup.uncaughtException(RootThreadGroup.java:69)
199        at java.lang.Thread.dispatchUncaughtException(Thread.java:1913)
200
201"Timer-0" daemon prio=5 tid=10b3dc000 nid=0x117916000 in Object.wait() [117915000]
202   java.lang.Thread.State: WAITING (on object monitor)
203        at java.lang.Object.wait(Native Method)
204        at java.lang.Object.wait(Object.java:485)
205        at java.util.TimerThread.mainLoop(Timer.java:483)
206        - locked <7c2f326c8> (a java.util.TaskQueue)
207        at java.util.TimerThread.run(Timer.java:462)
208
209"Java2D Disposer" daemon prio=10 tid=10b298800 nid=0x1153af000 in Object.wait() [1153ae000]
210   java.lang.Thread.State: WAITING (on object monitor)
211        at java.lang.Object.wait(Native Method)
212        at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:118)
213        - locked <7c2f21518> (a java.lang.ref.ReferenceQueue$Lock)
214        at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:134)
215        at sun.java2d.Disposer.run(Disposer.java:125)
216        at java.lang.Thread.run(Thread.java:695)
217
218"AWT-Shutdown" prio=5 tid=10b297800 nid=0x114501000 in Object.wait() [114500000]
219   java.lang.Thread.State: WAITING (on object monitor)
220        at java.lang.Object.wait(Native Method)
221        at java.lang.Object.wait(Object.java:485)
222        at sun.awt.AWTAutoShutdown.run(AWTAutoShutdown.java:265)
223        - locked <7c2f326e0> (a java.lang.Object)
224        at java.lang.Thread.run(Thread.java:695)
225
226"AWT-AppKit" daemon prio=5 tid=10b30d800 nid=0x7fff7ba82180 runnable [7fff5fbfb000]
227   java.lang.Thread.State: RUNNABLE
228        at apple.awt.CToolkit.doAWTRunLoop(Native Method)
229        at apple.awt.CToolkit.invokeAndWait(CToolkit.java:1153)
230        at apple.awt.CToolkit.invokeAndWait(CToolkit.java:1105)
231        at com.apple.laf.ScreenMenu.invokeOpenLater(ScreenMenu.java:115)
232
233"DestroyJavaVM" prio=5 tid=1118a4000 nid=0x106001000 waiting on condition [00000000]
234   java.lang.Thread.State: RUNNABLE
235
236"Low Memory Detector" daemon prio=5 tid=10b1d1000 nid=0x11134f000 runnable [00000000]
237   java.lang.Thread.State: RUNNABLE
238
239"C2 CompilerThread1" daemon prio=9 tid=10b1d0000 nid=0x11124c000 waiting on condition [00000000]
240   java.lang.Thread.State: RUNNABLE
241
242"C2 CompilerThread0" daemon prio=9 tid=10b1cf800 nid=0x111149000 waiting on condition [00000000]
243   java.lang.Thread.State: RUNNABLE
244
245"Signal Dispatcher" daemon prio=9 tid=10b1ce800 nid=0x111046000 runnable [00000000]
246   java.lang.Thread.State: RUNNABLE
247
248"Surrogate Locker Thread (Concurrent GC)" daemon prio=5 tid=10b1cd800 nid=0x110f43000 waiting on condition [00000000]
249   java.lang.Thread.State: RUNNABLE
250
251"Finalizer" daemon prio=8 tid=10b1b4000 nid=0x110e40000 in Object.wait() [110e3f000]
252   java.lang.Thread.State: WAITING (on object monitor)
253        at java.lang.Object.wait(Native Method)
254        at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:118)
255        - locked <7c2f32680> (a java.lang.ref.ReferenceQueue$Lock)
256        at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:134)
257        at java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:171)
258
259"Reference Handler" daemon prio=10 tid=10b1b3000 nid=0x110d3d000 in Object.wait() [110d3c000]
260   java.lang.Thread.State: WAITING (on object monitor)
261        at java.lang.Object.wait(Native Method)
262        at java.lang.Object.wait(Object.java:485)
263        at java.lang.ref.Reference$ReferenceHandler.run(Reference.java:116)
264        - locked <7c2eaad88> (a java.lang.ref.Reference$Lock)
265
266"VM Thread" prio=9 tid=10b1ae800 nid=0x110c3a000 runnable
267
268"Gang worker#0 (Parallel GC Threads)" prio=9 tid=10b000000 nid=0x10ab02000 runnable
269
270"Gang worker#1 (Parallel GC Threads)" prio=9 tid=10b001000 nid=0x10ac05000 runnable
271
272"Gang worker#2 (Parallel GC Threads)" prio=9 tid=10b001800 nid=0x10ad08000 runnable
273
274"Gang worker#3 (Parallel GC Threads)" prio=9 tid=10b002000 nid=0x10ae0b000 runnable
275
276"Gang worker#4 (Parallel GC Threads)" prio=9 tid=10b002800 nid=0x10af0e000 runnable
277
278"Gang worker#5 (Parallel GC Threads)" prio=9 tid=10b003800 nid=0x10b901000 runnable
279
280"Gang worker#6 (Parallel GC Threads)" prio=9 tid=10b004000 nid=0x10ba04000 runnable
281
282"Gang worker#7 (Parallel GC Threads)" prio=9 tid=10b004800 nid=0x10bb07000 runnable
283
284"Concurrent Mark-Sweep GC Thread" prio=9 tid=10b0e2000 nid=0x110944000 runnable
285"Gang worker#0 (Parallel CMS Threads)" prio=9 tid=10b0e0800 nid=0x10ff3e000 runnable
286
287"Gang worker#1 (Parallel CMS Threads)" prio=9 tid=10b0e1800 nid=0x110041000 runnable
288
289"VM Periodic Task Thread" prio=10 tid=10b1e2800 nid=0x111452000 waiting on condition
290
291"Exception Catcher Thread" prio=10 tid=107001800 nid=0x103f01000 runnable
292JNI global references: 38716
293
294[petr@LS25165 ~/Work/ome-internal]$ 14571457

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