1 | [hudson@ome-c6100-3 ~]$ cd OMERO-5.1-merge-deploy/ |
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2 | [hudson@ome-c6100-3 OMERO-5.1-merge-deploy]$ wget http://downloads.openmicroscopy.org/images/u-track/integrins.zip |
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3 | --2014-09-11 09:55:12-- http://downloads.openmicroscopy.org/images/u-track/integrins.zip |
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4 | Resolving downloads.openmicroscopy.org... 134.36.65.50 |
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5 | Connecting to downloads.openmicroscopy.org|134.36.65.50|:80... connected. |
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6 | HTTP request sent, awaiting response... 200 OK |
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7 | Length: 610248 (596K) [application/zip] |
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8 | Saving to: âintegrins.zipâ |
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9 | |
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10 | 100%[===================================================>] 610,248 --.-K/s in 0.01s |
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11 | |
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12 | 2014-09-11 09:55:12 (60.2 MB/s) - âintegrins.zipâ saved [610248/610248] |
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13 | |
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14 | [hudson@ome-c6100-3 OMERO-5.1-merge-deploy]$ ls -ltra |
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15 | total 680 |
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16 | -rw-rw-r-- 1 hudson hudson 610248 Oct 27 2013 integrins.zip |
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17 | -rw-r--r-- 1 hudson hudson 17987 Sep 11 04:51 LICENSE.txt |
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18 | drwxr-xr-x 2 hudson hudson 4096 Sep 11 04:51 licenses |
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19 | drwxr-xr-x 2 hudson hudson 4096 Sep 11 04:51 bin |
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20 | drwxr-xr-x 4 hudson hudson 4096 Sep 11 04:51 sql |
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21 | drwxr-xr-x 8 hudson hudson 4096 Sep 11 04:51 lib |
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22 | drwxr-xr-x 3 hudson hudson 4096 Sep 11 04:51 include |
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23 | -rw-r--r-- 1 hudson hudson 19205 Sep 11 04:51 history.txt |
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24 | drwxrwxr-x 3 hudson hudson 12288 Sep 11 04:52 .. |
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25 | drwxr-xr-x 4 hudson hudson 4096 Sep 11 04:53 etc |
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26 | drwxrwxr-x 5 hudson hudson 4096 Sep 11 04:53 var |
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27 | drwxr-xr-x 9 hudson hudson 4096 Sep 11 09:55 . |
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28 | [hudson@ome-c6100-3 OMERO-5.1-merge-deploy]$ unzip -l integrins.zip |
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29 | Archive: integrins.zip |
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30 | Length Date Time Name |
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31 | --------- ---------- ----- ---- |
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32 | 433611 10-19-2013 15:46 case1_higherSNR.ome.tiff |
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33 | 441871 10-19-2013 15:47 case2_lowerSNR.ome.tiff |
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34 | --------- ------- |
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35 | 875482 2 files |
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36 | [hudson@ome-c6100-3 OMERO-5.1-merge-deploy]$ bin/omeri mport ^C |
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37 | [hudson@ome-c6100-3 OMERO-5.1-merge-deploy]$ bin/omero import -f integrins.zip |
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38 | 2014-09-11 09:55:46,429 330 [ main] INFO ome.formats.importer.ImportConfig - OMERO Version: 5.1.0-m1-180-27b0279-ice34-b269 |
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39 | 2014-09-11 09:55:46,468 369 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 5.1.0-m1-180-27b0279-ice34-b269 revision: 745e5d6 date: 11 September 2014 |
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40 | 2014-09-11 09:55:46,483 384 [ main] INFO formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO |
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41 | 2014-09-11 09:55:47,034 935 [ main] INFO ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM |
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42 | 2014-09-11 09:55:48,827 2728 [ main] INFO ome.formats.importer.ImportCandidates - 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 1790ms. (1793ms total) [0 unknowns] |
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43 | #====================================== |
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44 | # Group: /opt/hudson/workspace/OMERO-5.1-merge-deploy/src/dist/integrins.zip SPW: false Reader: loci.formats.in.OMETiffReader |
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45 | /opt/hudson/workspace/OMERO-5.1-merge-deploy/src/dist/integrins.zip |
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46 | [hudson@ome-c6100-3 OMERO-5.1-merge-deploy]$ bin/omero import integrins.zip |
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47 | Previous session expired for 3799ba27-5c79-44ae-877e-a2c169b0152d on localhost:4064 |
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48 | Server: [localhost] |
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49 | Username: [3799ba27-5c79-44ae-877e-a2c169b0152d]jamoore |
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50 | Password: |
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51 | Created session 4ae3c713-aca7-4999-b447-f081690d9aa6 (jamoore@localhost:4064). Idle timeout: 10.0 min. Current group: default |
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52 | 2014-09-11 10:09:54,424 392 [ main] INFO ome.formats.importer.ImportConfig - OMERO Version: 5.1.0-m1-180-27b0279-ice34-b269 |
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53 | 2014-09-11 10:09:54,438 406 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 5.1.0-m1-180-27b0279-ice34-b269 revision: 745e5d6 date: 11 September 2014 |
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54 | 2014-09-11 10:09:54,444 412 [ main] INFO formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO |
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55 | 2014-09-11 10:09:54,732 700 [ main] INFO ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM |
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56 | 2014-09-11 10:09:56,731 2699 [ main] INFO ome.formats.importer.ImportCandidates - 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 1996ms. (1999ms total) [0 unknowns] |
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57 | 2014-09-11 10:09:58,225 4193 [ main] INFO ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to localhost:4064 |
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58 | 2014-09-11 10:09:59,118 5086 [ main] INFO ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back |
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59 | 2014-09-11 10:09:59,560 5528 [ main] INFO ome.formats.OMEROMetadataStoreClient - Server: 5.1.0 |
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60 | 2014-09-11 10:09:59,560 5528 [ main] INFO ome.formats.OMEROMetadataStoreClient - Client: 5.1.0-m1-180-27b0279-ice34-b269 |
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61 | 2014-09-11 10:09:59,560 5528 [ main] INFO ome.formats.OMEROMetadataStoreClient - Java Version: 1.7.0_51 |
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62 | 2014-09-11 10:09:59,560 5528 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Name: Linux |
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63 | 2014-09-11 10:09:59,560 5528 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Arch: amd64 |
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64 | 2014-09-11 10:09:59,560 5528 [ main] INFO ome.formats.OMEROMetadataStoreClient - OS Version: 2.6.32-358.6.2.el6.x86_64 |
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65 | 2014-09-11 10:09:59,737 5705 [ main] INFO ormats.importer.cli.LoggingImportMonitor - FILESET_UPLOAD_PREPARATION |
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66 | 2014-09-11 10:10:01,583 7551 [ main] INFO ormats.importer.cli.LoggingImportMonitor - FILESET_UPLOAD_START |
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67 | 2014-09-11 10:10:01,619 7587 [ main] INFO ts.importer.transfers.UploadFileTransfer - Transferring /opt/hudson/workspace/OMERO-5.1-merge-deploy/src/dist/integrins.zip... |
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68 | 2014-09-11 10:10:01,681 7649 [ main] INFO ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /opt/hudson/workspace/OMERO-5.1-merge-deploy/src/dist/integrins.zip |
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69 | 2014-09-11 10:10:01,831 7799 [ main] INFO ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /opt/hudson/workspace/OMERO-5.1-merge-deploy/src/dist/integrins.zip |
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70 | 2014-09-11 10:10:02,013 7981 [ main] INFO ormats.importer.cli.LoggingImportMonitor - FILESET_UPLOAD_END |
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71 | 2014-09-11 10:10:04,330 10298 [l.Client-1] INFO ormats.importer.cli.LoggingImportMonitor - METADATA_IMPORTED Step: 1 of 5 Logfile: 126975 |
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72 | 2014-09-11 10:10:05,267 11235 [l.Client-0] INFO ormats.importer.cli.LoggingImportMonitor - PIXELDATA_PROCESSED Step: 2 of 5 Logfile: 126975 |
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73 | 2014-09-11 10:10:05,503 11471 [l.Client-1] ERROR ome.formats.importer.cli.ErrorHandler - INTERNAL_EXCEPTION: /opt/hudson/workspace/OMERO-5.1-merge-deploy/src/dist/integrins.zip |
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74 | java.lang.RuntimeException: Failure response on import! |
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75 | Category: ::omero::grid::ImportRequest |
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76 | Name: import-request-failure |
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77 | Parameters: {message=omero.InternalException |
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78 | serverStackTrace = "ome.conditions.InternalException: Wrapped Exception: (java.lang.IllegalAccessError): |
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79 | tried to access class sun.nio.cs.UTF_8 from class sun.nio.cs.UTF_8ConstructorAccess |
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80 | at sun.nio.cs.UTF_8ConstructorAccess.newInstance(Unknown Source) |
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81 | at com.esotericsoftware.kryo.Kryo$1.newInstance(Kryo.java:1015) |
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82 | at com.esotericsoftware.kryo.Kryo.newInstance(Kryo.java:1065) |
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83 | at com.esotericsoftware.kryo.serializers.FieldSerializer.create(FieldSerializer.java:228) |
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84 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:217) |
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85 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
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86 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
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87 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
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88 | at com.esotericsoftware.kryo.Kryo.readObjectOrNull(Kryo.java:699) |
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89 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:611) |
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90 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
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91 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
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92 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
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93 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
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94 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
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95 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
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96 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
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97 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
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98 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
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99 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
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100 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
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101 | at loci.common.RandomAccessInputStream.read(RandomAccessInputStream.java:635) |
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102 | at com.esotericsoftware.kryo.serializers.DefaultSerializers$KryoSerializableSerializer.read(DefaultSerializers.java:363) |
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103 | at com.esotericsoftware.kryo.serializers.DefaultSerializers$KryoSerializableSerializer.read(DefaultSerializers.java:355) |
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104 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
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105 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
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106 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
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107 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
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108 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
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109 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
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110 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
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111 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:338) |
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112 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
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113 | at com.esotericsoftware.kryo.Kryo.readObjectOrNull(Kryo.java:699) |
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114 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:332) |
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115 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
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116 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
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117 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
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118 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
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119 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
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120 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:338) |
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121 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
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122 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
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123 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
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124 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
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125 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
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126 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
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127 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
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128 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
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129 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
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130 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
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131 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:626) |
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132 | at loci.formats.Memoizer$KryoDeser.loadReader(Memoizer.java:137) |
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133 | at loci.formats.Memoizer.loadMemo(Memoizer.java:749) |
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134 | at loci.formats.Memoizer.setId(Memoizer.java:579) |
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135 | at ome.io.bioformats.BfPixelsWrapper.<init>(BfPixelsWrapper.java:51) |
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136 | at ome.io.bioformats.BfPixelBuffer.reader(BfPixelBuffer.java:73) |
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137 | at ome.io.bioformats.BfPixelBuffer.setSeries(BfPixelBuffer.java:109) |
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138 | at ome.io.nio.PixelsService.createBfPixelBuffer(PixelsService.java:803) |
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139 | at ome.io.nio.PixelsService._getPixelBuffer(PixelsService.java:574) |
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140 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:492) |
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141 | at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:500) |
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142 | at ome.logic.RenderingSettingsImpl.resetDefaultsInSet(RenderingSettingsImpl.java:629) |
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143 | at ome.logic.RenderingSettingsImpl.resetDefaultsInSet(RenderingSettingsImpl.java:1383) |
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144 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
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145 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
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146 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
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147 | at java.lang.reflect.Method.invoke(Method.java:606) |
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148 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
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149 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
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150 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
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151 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
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152 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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153 | at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) |
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154 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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155 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
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156 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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157 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
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158 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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159 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
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160 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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161 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
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162 | at com.sun.proxy.$Proxy112.resetDefaultsInSet(Unknown Source) |
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163 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
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164 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
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165 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
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166 | at java.lang.reflect.Method.invoke(Method.java:606) |
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167 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
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168 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
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169 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
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170 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
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171 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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172 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
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173 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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174 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
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175 | at com.sun.proxy.$Proxy112.resetDefaultsInSet(Unknown Source) |
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176 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
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177 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
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178 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
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179 | at java.lang.reflect.Method.invoke(Method.java:606) |
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180 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
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181 | at ome.services.throttling.Callback.run(Callback.java:56) |
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182 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
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183 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
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184 | at ome.services.blitz.impl.RenderingSettingsI.resetDefaultsInSet_async(RenderingSettingsI.java:140) |
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185 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
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186 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
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187 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
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188 | at java.lang.reflect.Method.invoke(Method.java:606) |
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189 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
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190 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
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191 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
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192 | at omero.cmd.CallContext.invoke(CallContext.java:78) |
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193 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
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194 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
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195 | at com.sun.proxy.$Proxy113.resetDefaultsInSet_async(Unknown Source) |
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196 | at omero.api._IRenderingSettingsTie.resetDefaultsInSet_async(_IRenderingSettingsTie.java:164) |
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197 | at omero.api._IRenderingSettingsDisp.___resetDefaultsInSet(_IRenderingSettingsDisp.java:423) |
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198 | at omero.api._IRenderingSettingsDisp.__dispatch(_IRenderingSettingsDisp.java:814) |
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199 | at IceInternal.Incoming.invoke(Incoming.java:159) |
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200 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2357) |
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201 | at Ice.ConnectionI.dispatch(ConnectionI.java:1208) |
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202 | at Ice.ConnectionI.message(ConnectionI.java:1163) |
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203 | at IceInternal.ThreadPool.run(ThreadPool.java:302) |
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204 | at IceInternal.ThreadPool.access$300(ThreadPool.java:12) |
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205 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643) |
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206 | at java.lang.Thread.run(Thread.java:744) |
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207 | " |
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208 | serverExceptionClass = "ome.conditions.InternalException" |
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209 | message = " Wrapped Exception: (java.lang.IllegalAccessError): |
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210 | tried to access class sun.nio.cs.UTF_8 from class sun.nio.cs.UTF_8ConstructorAccess", stacktrace=java.lang.RuntimeException: omero.InternalException |
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211 | serverStackTrace = "ome.conditions.InternalException: Wrapped Exception: (java.lang.IllegalAccessError): |
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212 | tried to access class sun.nio.cs.UTF_8 from class sun.nio.cs.UTF_8ConstructorAccess |
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213 | at sun.nio.cs.UTF_8ConstructorAccess.newInstance(Unknown Source) |
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214 | at com.esotericsoftware.kryo.Kryo$1.newInstance(Kryo.java:1015) |
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215 | at com.esotericsoftware.kryo.Kryo.newInstance(Kryo.java:1065) |
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216 | at com.esotericsoftware.kryo.serializers.FieldSerializer.create(FieldSerializer.java:228) |
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217 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:217) |
---|
218 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
219 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
220 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
221 | at com.esotericsoftware.kryo.Kryo.readObjectOrNull(Kryo.java:699) |
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222 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:611) |
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223 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
224 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
225 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
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226 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
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227 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
228 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
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229 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
230 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
231 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
232 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
233 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
---|
234 | at loci.common.RandomAccessInputStream.read(RandomAccessInputStream.java:635) |
---|
235 | at com.esotericsoftware.kryo.serializers.DefaultSerializers$KryoSerializableSerializer.read(DefaultSerializers.java:363) |
---|
236 | at com.esotericsoftware.kryo.serializers.DefaultSerializers$KryoSerializableSerializer.read(DefaultSerializers.java:355) |
---|
237 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
238 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
239 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
240 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
241 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
242 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
243 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
---|
244 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:338) |
---|
245 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
---|
246 | at com.esotericsoftware.kryo.Kryo.readObjectOrNull(Kryo.java:699) |
---|
247 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:332) |
---|
248 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
---|
249 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
250 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
251 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
252 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
---|
253 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:338) |
---|
254 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
---|
255 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
256 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
257 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
258 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
259 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
260 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
261 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
262 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
263 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
264 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:626) |
---|
265 | at loci.formats.Memoizer$KryoDeser.loadReader(Memoizer.java:137) |
---|
266 | at loci.formats.Memoizer.loadMemo(Memoizer.java:749) |
---|
267 | at loci.formats.Memoizer.setId(Memoizer.java:579) |
---|
268 | at ome.io.bioformats.BfPixelsWrapper.<init>(BfPixelsWrapper.java:51) |
---|
269 | at ome.io.bioformats.BfPixelBuffer.reader(BfPixelBuffer.java:73) |
---|
270 | at ome.io.bioformats.BfPixelBuffer.setSeries(BfPixelBuffer.java:109) |
---|
271 | at ome.io.nio.PixelsService.createBfPixelBuffer(PixelsService.java:803) |
---|
272 | at ome.io.nio.PixelsService._getPixelBuffer(PixelsService.java:574) |
---|
273 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:492) |
---|
274 | at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:500) |
---|
275 | at ome.logic.RenderingSettingsImpl.resetDefaultsInSet(RenderingSettingsImpl.java:629) |
---|
276 | at ome.logic.RenderingSettingsImpl.resetDefaultsInSet(RenderingSettingsImpl.java:1383) |
---|
277 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
278 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
279 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
280 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
281 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
282 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
283 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
284 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
285 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
286 | at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) |
---|
287 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
288 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
289 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
290 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
291 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
292 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
293 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
294 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
295 | at com.sun.proxy.$Proxy112.resetDefaultsInSet(Unknown Source) |
---|
296 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
297 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
298 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
299 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
300 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
301 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
302 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
303 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
304 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
305 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
306 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
307 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
308 | at com.sun.proxy.$Proxy112.resetDefaultsInSet(Unknown Source) |
---|
309 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
310 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
311 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
312 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
313 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
314 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
315 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
316 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
---|
317 | at ome.services.blitz.impl.RenderingSettingsI.resetDefaultsInSet_async(RenderingSettingsI.java:140) |
---|
318 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
319 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
320 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
321 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
322 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
323 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
324 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
325 | at omero.cmd.CallContext.invoke(CallContext.java:78) |
---|
326 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
327 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
328 | at com.sun.proxy.$Proxy113.resetDefaultsInSet_async(Unknown Source) |
---|
329 | at omero.api._IRenderingSettingsTie.resetDefaultsInSet_async(_IRenderingSettingsTie.java:164) |
---|
330 | at omero.api._IRenderingSettingsDisp.___resetDefaultsInSet(_IRenderingSettingsDisp.java:423) |
---|
331 | at omero.api._IRenderingSettingsDisp.__dispatch(_IRenderingSettingsDisp.java:814) |
---|
332 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
333 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2357) |
---|
334 | at Ice.ConnectionI.dispatch(ConnectionI.java:1208) |
---|
335 | at Ice.ConnectionI.message(ConnectionI.java:1163) |
---|
336 | at IceInternal.ThreadPool.run(ThreadPool.java:302) |
---|
337 | at IceInternal.ThreadPool.access$300(ThreadPool.java:12) |
---|
338 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643) |
---|
339 | at java.lang.Thread.run(Thread.java:744) |
---|
340 | " |
---|
341 | serverExceptionClass = "ome.conditions.InternalException" |
---|
342 | message = " Wrapped Exception: (java.lang.IllegalAccessError): |
---|
343 | tried to access class sun.nio.cs.UTF_8 from class sun.nio.cs.UTF_8ConstructorAccess" |
---|
344 | at ome.formats.OMEROMetadataStoreClient.resetDefaultsAndGenerateThumbnails(OMEROMetadataStoreClient.java:2357) |
---|
345 | at ome.services.blitz.repo.ManagedImportRequestI.generateThumbnails(ManagedImportRequestI.java:590) |
---|
346 | at ome.services.blitz.repo.ManagedImportRequestI.step(ManagedImportRequestI.java:387) |
---|
347 | at omero.cmd.HandleI.steps(HandleI.java:436) |
---|
348 | at omero.cmd.HandleI$1.doWork(HandleI.java:365) |
---|
349 | at omero.cmd.HandleI$1.doWork(HandleI.java:361) |
---|
350 | at sun.reflect.GeneratedMethodAccessor268.invoke(Unknown Source) |
---|
351 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
352 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
353 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
354 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
355 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
356 | at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:576) |
---|
357 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
358 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
359 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
360 | at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) |
---|
361 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
362 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
363 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
364 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
365 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
366 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
367 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
368 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
369 | at com.sun.proxy.$Proxy68.doWork(Unknown Source) |
---|
370 | at ome.services.util.Executor$Impl.execute(Executor.java:457) |
---|
371 | at omero.cmd.HandleI.run(HandleI.java:359) |
---|
372 | at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) |
---|
373 | at ome.services.util.Executor$Impl$1.call(Executor.java:498) |
---|
374 | at java.util.concurrent.FutureTask.run(FutureTask.java:262) |
---|
375 | at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) |
---|
376 | at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) |
---|
377 | at java.lang.Thread.run(Thread.java:744) |
---|
378 | Caused by: omero.InternalException |
---|
379 | serverStackTrace = "ome.conditions.InternalException: Wrapped Exception: (java.lang.IllegalAccessError): |
---|
380 | tried to access class sun.nio.cs.UTF_8 from class sun.nio.cs.UTF_8ConstructorAccess |
---|
381 | at sun.nio.cs.UTF_8ConstructorAccess.newInstance(Unknown Source) |
---|
382 | at com.esotericsoftware.kryo.Kryo$1.newInstance(Kryo.java:1015) |
---|
383 | at com.esotericsoftware.kryo.Kryo.newInstance(Kryo.java:1065) |
---|
384 | at com.esotericsoftware.kryo.serializers.FieldSerializer.create(FieldSerializer.java:228) |
---|
385 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:217) |
---|
386 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
387 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
388 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
389 | at com.esotericsoftware.kryo.Kryo.readObjectOrNull(Kryo.java:699) |
---|
390 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:611) |
---|
391 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
392 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
393 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
394 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
395 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
396 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
397 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
398 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
399 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
400 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
401 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
---|
402 | at loci.common.RandomAccessInputStream.read(RandomAccessInputStream.java:635) |
---|
403 | at com.esotericsoftware.kryo.serializers.DefaultSerializers$KryoSerializableSerializer.read(DefaultSerializers.java:363) |
---|
404 | at com.esotericsoftware.kryo.serializers.DefaultSerializers$KryoSerializableSerializer.read(DefaultSerializers.java:355) |
---|
405 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
406 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
407 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
408 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
409 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
410 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
411 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
---|
412 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:338) |
---|
413 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
---|
414 | at com.esotericsoftware.kryo.Kryo.readObjectOrNull(Kryo.java:699) |
---|
415 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:332) |
---|
416 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
---|
417 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
418 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
419 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
420 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
---|
421 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:338) |
---|
422 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
---|
423 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
424 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
425 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
426 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
427 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
428 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
429 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
430 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
431 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
432 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:626) |
---|
433 | at loci.formats.Memoizer$KryoDeser.loadReader(Memoizer.java:137) |
---|
434 | at loci.formats.Memoizer.loadMemo(Memoizer.java:749) |
---|
435 | at loci.formats.Memoizer.setId(Memoizer.java:579) |
---|
436 | at ome.io.bioformats.BfPixelsWrapper.<init>(BfPixelsWrapper.java:51) |
---|
437 | at ome.io.bioformats.BfPixelBuffer.reader(BfPixelBuffer.java:73) |
---|
438 | at ome.io.bioformats.BfPixelBuffer.setSeries(BfPixelBuffer.java:109) |
---|
439 | at ome.io.nio.PixelsService.createBfPixelBuffer(PixelsService.java:803) |
---|
440 | at ome.io.nio.PixelsService._getPixelBuffer(PixelsService.java:574) |
---|
441 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:492) |
---|
442 | at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:500) |
---|
443 | at ome.logic.RenderingSettingsImpl.resetDefaultsInSet(RenderingSettingsImpl.java:629) |
---|
444 | at ome.logic.RenderingSettingsImpl.resetDefaultsInSet(RenderingSettingsImpl.java:1383) |
---|
445 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
446 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
447 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
448 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
449 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
450 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
451 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
452 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
453 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
454 | at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) |
---|
455 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
456 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
457 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
458 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
459 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
460 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
461 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
462 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
463 | at com.sun.proxy.$Proxy112.resetDefaultsInSet(Unknown Source) |
---|
464 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
465 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
466 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
467 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
468 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
469 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
470 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
471 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
472 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
473 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
474 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
475 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
476 | at com.sun.proxy.$Proxy112.resetDefaultsInSet(Unknown Source) |
---|
477 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
478 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
479 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
480 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
481 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
482 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
483 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
484 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
---|
485 | at ome.services.blitz.impl.RenderingSettingsI.resetDefaultsInSet_async(RenderingSettingsI.java:140) |
---|
486 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
487 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
488 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
489 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
490 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
491 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
492 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
493 | at omero.cmd.CallContext.invoke(CallContext.java:78) |
---|
494 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
495 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
496 | at com.sun.proxy.$Proxy113.resetDefaultsInSet_async(Unknown Source) |
---|
497 | at omero.api._IRenderingSettingsTie.resetDefaultsInSet_async(_IRenderingSettingsTie.java:164) |
---|
498 | at omero.api._IRenderingSettingsDisp.___resetDefaultsInSet(_IRenderingSettingsDisp.java:423) |
---|
499 | at omero.api._IRenderingSettingsDisp.__dispatch(_IRenderingSettingsDisp.java:814) |
---|
500 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
501 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2357) |
---|
502 | at Ice.ConnectionI.dispatch(ConnectionI.java:1208) |
---|
503 | at Ice.ConnectionI.message(ConnectionI.java:1163) |
---|
504 | at IceInternal.ThreadPool.run(ThreadPool.java:302) |
---|
505 | at IceInternal.ThreadPool.access$300(ThreadPool.java:12) |
---|
506 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643) |
---|
507 | at java.lang.Thread.run(Thread.java:744) |
---|
508 | " |
---|
509 | serverExceptionClass = "ome.conditions.InternalException" |
---|
510 | message = " Wrapped Exception: (java.lang.IllegalAccessError): |
---|
511 | tried to access class sun.nio.cs.UTF_8 from class sun.nio.cs.UTF_8ConstructorAccess" |
---|
512 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
513 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) |
---|
514 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) |
---|
515 | at java.lang.reflect.Constructor.newInstance(Constructor.java:526) |
---|
516 | at java.lang.Class.newInstance(Class.java:374) |
---|
517 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2142) |
---|
518 | at IceInternal.BasicStream.throwException(BasicStream.java:1564) |
---|
519 | at IceInternal.Outgoing.throwUserException(Outgoing.java:443) |
---|
520 | at omero.api._IRenderingSettingsDelM.resetDefaultsInSet(_IRenderingSettingsDelM.java:737) |
---|
521 | at omero.api.IRenderingSettingsPrxHelper.resetDefaultsInSet(IRenderingSettingsPrxHelper.java:2091) |
---|
522 | at omero.api.IRenderingSettingsPrxHelper.resetDefaultsInSet(IRenderingSettingsPrxHelper.java:2064) |
---|
523 | at ome.formats.OMEROMetadataStoreClient.resetDefaultsAndGenerateThumbnails(OMEROMetadataStoreClient.java:2350) |
---|
524 | ... 33 more |
---|
525 | } |
---|
526 | |
---|
527 | at ome.formats.importer.ImportLibrary$ImportCallback.onFinished(ImportLibrary.java:627) |
---|
528 | at omero.cmd.CmdCallbackI.finished(CmdCallbackI.java:301) |
---|
529 | at omero.cmd._CmdCallbackDisp.___finished(_CmdCallbackDisp.java:130) |
---|
530 | at omero.cmd._CmdCallbackDisp.__dispatch(_CmdCallbackDisp.java:157) |
---|
531 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
532 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2357) |
---|
533 | at Ice.ConnectionI.dispatch(ConnectionI.java:1208) |
---|
534 | at Ice.ConnectionI.message(ConnectionI.java:1163) |
---|
535 | at IceInternal.ThreadPool.run(ThreadPool.java:302) |
---|
536 | at IceInternal.ThreadPool.access$300(ThreadPool.java:12) |
---|
537 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643) |
---|
538 | at java.lang.Thread.run(Thread.java:744) |
---|
539 | |
---|
540 | java.lang.RuntimeException: Failure response on import! |
---|
541 | Category: ::omero::grid::ImportRequest |
---|
542 | Name: import-request-failure |
---|
543 | Parameters: {message=omero.InternalException |
---|
544 | serverStackTrace = "ome.conditions.InternalException: Wrapped Exception: (java.lang.IllegalAccessError): |
---|
545 | tried to access class sun.nio.cs.UTF_8 from class sun.nio.cs.UTF_8ConstructorAccess |
---|
546 | at sun.nio.cs.UTF_8ConstructorAccess.newInstance(Unknown Source) |
---|
547 | at com.esotericsoftware.kryo.Kryo$1.newInstance(Kryo.java:1015) |
---|
548 | at com.esotericsoftware.kryo.Kryo.newInstance(Kryo.java:1065) |
---|
549 | at com.esotericsoftware.kryo.serializers.FieldSerializer.create(FieldSerializer.java:228) |
---|
550 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:217) |
---|
551 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
552 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
553 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
554 | at com.esotericsoftware.kryo.Kryo.readObjectOrNull(Kryo.java:699) |
---|
555 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:611) |
---|
556 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
557 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
558 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
559 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
560 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
561 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
562 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
563 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
564 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
565 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
566 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
---|
567 | at loci.common.RandomAccessInputStream.read(RandomAccessInputStream.java:635) |
---|
568 | at com.esotericsoftware.kryo.serializers.DefaultSerializers$KryoSerializableSerializer.read(DefaultSerializers.java:363) |
---|
569 | at com.esotericsoftware.kryo.serializers.DefaultSerializers$KryoSerializableSerializer.read(DefaultSerializers.java:355) |
---|
570 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
571 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
572 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
573 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
574 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
575 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
576 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
---|
577 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:338) |
---|
578 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
---|
579 | at com.esotericsoftware.kryo.Kryo.readObjectOrNull(Kryo.java:699) |
---|
580 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:332) |
---|
581 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
---|
582 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
583 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
584 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
585 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
---|
586 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:338) |
---|
587 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
---|
588 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
589 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
590 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
591 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
592 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
593 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
594 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
595 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
596 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
597 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:626) |
---|
598 | at loci.formats.Memoizer$KryoDeser.loadReader(Memoizer.java:137) |
---|
599 | at loci.formats.Memoizer.loadMemo(Memoizer.java:749) |
---|
600 | at loci.formats.Memoizer.setId(Memoizer.java:579) |
---|
601 | at ome.io.bioformats.BfPixelsWrapper.<init>(BfPixelsWrapper.java:51) |
---|
602 | at ome.io.bioformats.BfPixelBuffer.reader(BfPixelBuffer.java:73) |
---|
603 | at ome.io.bioformats.BfPixelBuffer.setSeries(BfPixelBuffer.java:109) |
---|
604 | at ome.io.nio.PixelsService.createBfPixelBuffer(PixelsService.java:803) |
---|
605 | at ome.io.nio.PixelsService._getPixelBuffer(PixelsService.java:574) |
---|
606 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:492) |
---|
607 | at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:500) |
---|
608 | at ome.logic.RenderingSettingsImpl.resetDefaultsInSet(RenderingSettingsImpl.java:629) |
---|
609 | at ome.logic.RenderingSettingsImpl.resetDefaultsInSet(RenderingSettingsImpl.java:1383) |
---|
610 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
611 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
612 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
613 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
614 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
615 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
616 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
617 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
618 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
619 | at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) |
---|
620 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
621 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
622 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
623 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
624 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
625 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
626 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
627 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
628 | at com.sun.proxy.$Proxy112.resetDefaultsInSet(Unknown Source) |
---|
629 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
630 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
631 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
632 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
633 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
634 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
635 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
636 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
637 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
638 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
639 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
640 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
641 | at com.sun.proxy.$Proxy112.resetDefaultsInSet(Unknown Source) |
---|
642 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
643 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
644 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
645 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
646 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
647 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
648 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
649 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
---|
650 | at ome.services.blitz.impl.RenderingSettingsI.resetDefaultsInSet_async(RenderingSettingsI.java:140) |
---|
651 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
652 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
653 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
654 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
655 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
656 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
657 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
658 | at omero.cmd.CallContext.invoke(CallContext.java:78) |
---|
659 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
660 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
661 | at com.sun.proxy.$Proxy113.resetDefaultsInSet_async(Unknown Source) |
---|
662 | at omero.api._IRenderingSettingsTie.resetDefaultsInSet_async(_IRenderingSettingsTie.java:164) |
---|
663 | at omero.api._IRenderingSettingsDisp.___resetDefaultsInSet(_IRenderingSettingsDisp.java:423) |
---|
664 | at omero.api._IRenderingSettingsDisp.__dispatch(_IRenderingSettingsDisp.java:814) |
---|
665 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
666 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2357) |
---|
667 | at Ice.ConnectionI.dispatch(ConnectionI.java:1208) |
---|
668 | at Ice.ConnectionI.message(ConnectionI.java:1163) |
---|
669 | at IceInternal.ThreadPool.run(ThreadPool.java:302) |
---|
670 | at IceInternal.ThreadPool.access$300(ThreadPool.java:12) |
---|
671 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643) |
---|
672 | at java.lang.Thread.run(Thread.java:744) |
---|
673 | " |
---|
674 | serverExceptionClass = "ome.conditions.InternalException" |
---|
675 | message = " Wrapped Exception: (java.lang.IllegalAccessError): |
---|
676 | tried to access class sun.nio.cs.UTF_8 from class sun.nio.cs.UTF_8ConstructorAccess", stacktrace=java.lang.RuntimeException: omero.InternalException |
---|
677 | serverStackTrace = "ome.conditions.InternalException: Wrapped Exception: (java.lang.IllegalAccessError): |
---|
678 | tried to access class sun.nio.cs.UTF_8 from class sun.nio.cs.UTF_8ConstructorAccess |
---|
679 | at sun.nio.cs.UTF_8ConstructorAccess.newInstance(Unknown Source) |
---|
680 | at com.esotericsoftware.kryo.Kryo$1.newInstance(Kryo.java:1015) |
---|
681 | at com.esotericsoftware.kryo.Kryo.newInstance(Kryo.java:1065) |
---|
682 | at com.esotericsoftware.kryo.serializers.FieldSerializer.create(FieldSerializer.java:228) |
---|
683 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:217) |
---|
684 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
685 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
686 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
687 | at com.esotericsoftware.kryo.Kryo.readObjectOrNull(Kryo.java:699) |
---|
688 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:611) |
---|
689 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
690 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
691 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
692 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
693 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
694 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
695 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
696 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
697 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
698 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
699 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
---|
700 | at loci.common.RandomAccessInputStream.read(RandomAccessInputStream.java:635) |
---|
701 | at com.esotericsoftware.kryo.serializers.DefaultSerializers$KryoSerializableSerializer.read(DefaultSerializers.java:363) |
---|
702 | at com.esotericsoftware.kryo.serializers.DefaultSerializers$KryoSerializableSerializer.read(DefaultSerializers.java:355) |
---|
703 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
704 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
705 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
706 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
707 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
708 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
709 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
---|
710 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:338) |
---|
711 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
---|
712 | at com.esotericsoftware.kryo.Kryo.readObjectOrNull(Kryo.java:699) |
---|
713 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:332) |
---|
714 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
---|
715 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
716 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
717 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
718 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
---|
719 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:338) |
---|
720 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
---|
721 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
722 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
723 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
724 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
725 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
726 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
727 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
728 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
729 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
730 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:626) |
---|
731 | at loci.formats.Memoizer$KryoDeser.loadReader(Memoizer.java:137) |
---|
732 | at loci.formats.Memoizer.loadMemo(Memoizer.java:749) |
---|
733 | at loci.formats.Memoizer.setId(Memoizer.java:579) |
---|
734 | at ome.io.bioformats.BfPixelsWrapper.<init>(BfPixelsWrapper.java:51) |
---|
735 | at ome.io.bioformats.BfPixelBuffer.reader(BfPixelBuffer.java:73) |
---|
736 | at ome.io.bioformats.BfPixelBuffer.setSeries(BfPixelBuffer.java:109) |
---|
737 | at ome.io.nio.PixelsService.createBfPixelBuffer(PixelsService.java:803) |
---|
738 | at ome.io.nio.PixelsService._getPixelBuffer(PixelsService.java:574) |
---|
739 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:492) |
---|
740 | at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:500) |
---|
741 | at ome.logic.RenderingSettingsImpl.resetDefaultsInSet(RenderingSettingsImpl.java:629) |
---|
742 | at ome.logic.RenderingSettingsImpl.resetDefaultsInSet(RenderingSettingsImpl.java:1383) |
---|
743 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
744 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
745 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
746 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
747 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
748 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
749 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
750 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
751 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
752 | at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) |
---|
753 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
754 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
755 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
756 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
757 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
758 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
759 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
760 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
761 | at com.sun.proxy.$Proxy112.resetDefaultsInSet(Unknown Source) |
---|
762 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
763 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
764 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
765 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
766 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
767 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
768 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
769 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
770 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
771 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
772 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
773 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
774 | at com.sun.proxy.$Proxy112.resetDefaultsInSet(Unknown Source) |
---|
775 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
776 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
777 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
778 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
779 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
780 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
781 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
782 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
---|
783 | at ome.services.blitz.impl.RenderingSettingsI.resetDefaultsInSet_async(RenderingSettingsI.java:140) |
---|
784 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
785 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
786 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
787 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
788 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
789 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
790 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
791 | at omero.cmd.CallContext.invoke(CallContext.java:78) |
---|
792 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
793 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
794 | at com.sun.proxy.$Proxy113.resetDefaultsInSet_async(Unknown Source) |
---|
795 | at omero.api._IRenderingSettingsTie.resetDefaultsInSet_async(_IRenderingSettingsTie.java:164) |
---|
796 | at omero.api._IRenderingSettingsDisp.___resetDefaultsInSet(_IRenderingSettingsDisp.java:423) |
---|
797 | at omero.api._IRenderingSettingsDisp.__dispatch(_IRenderingSettingsDisp.java:814) |
---|
798 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
799 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2357) |
---|
800 | at Ice.ConnectionI.dispatch(ConnectionI.java:1208) |
---|
801 | at Ice.ConnectionI.message(ConnectionI.java:1163) |
---|
802 | at IceInternal.ThreadPool.run(ThreadPool.java:302) |
---|
803 | at IceInternal.ThreadPool.access$300(ThreadPool.java:12) |
---|
804 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643) |
---|
805 | at java.lang.Thread.run(Thread.java:744) |
---|
806 | " |
---|
807 | serverExceptionClass = "ome.conditions.InternalException" |
---|
808 | message = " Wrapped Exception: (java.lang.IllegalAccessError): |
---|
809 | tried to access class sun.nio.cs.UTF_8 from class sun.nio.cs.UTF_8ConstructorAccess" |
---|
810 | at ome.formats.OMEROMetadataStoreClient.resetDefaultsAndGenerateThumbnails(OMEROMetadataStoreClient.java:2357) |
---|
811 | at ome.services.blitz.repo.ManagedImportRequestI.generateThumbnails(ManagedImportRequestI.java:590) |
---|
812 | at ome.services.blitz.repo.ManagedImportRequestI.step(ManagedImportRequestI.java:387) |
---|
813 | at omero.cmd.HandleI.steps(HandleI.java:436) |
---|
814 | at omero.cmd.HandleI$1.doWork(HandleI.java:365) |
---|
815 | at omero.cmd.HandleI$1.doWork(HandleI.java:361) |
---|
816 | at sun.reflect.GeneratedMethodAccessor268.invoke(Unknown Source) |
---|
817 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
818 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
819 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
820 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
821 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
822 | at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:576) |
---|
823 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
824 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
825 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
826 | at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) |
---|
827 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
828 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
829 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
830 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
831 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
832 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
833 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
834 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
835 | at com.sun.proxy.$Proxy68.doWork(Unknown Source) |
---|
836 | at ome.services.util.Executor$Impl.execute(Executor.java:457) |
---|
837 | at omero.cmd.HandleI.run(HandleI.java:359) |
---|
838 | at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471) |
---|
839 | at ome.services.util.Executor$Impl$1.call(Executor.java:498) |
---|
840 | at java.util.concurrent.FutureTask.run(FutureTask.java:262) |
---|
841 | at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) |
---|
842 | at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) |
---|
843 | at java.lang.Thread.run(Thread.java:744) |
---|
844 | Caused by: omero.InternalException |
---|
845 | serverStackTrace = "ome.conditions.InternalException: Wrapped Exception: (java.lang.IllegalAccessError): |
---|
846 | tried to access class sun.nio.cs.UTF_8 from class sun.nio.cs.UTF_8ConstructorAccess |
---|
847 | at sun.nio.cs.UTF_8ConstructorAccess.newInstance(Unknown Source) |
---|
848 | at com.esotericsoftware.kryo.Kryo$1.newInstance(Kryo.java:1015) |
---|
849 | at com.esotericsoftware.kryo.Kryo.newInstance(Kryo.java:1065) |
---|
850 | at com.esotericsoftware.kryo.serializers.FieldSerializer.create(FieldSerializer.java:228) |
---|
851 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:217) |
---|
852 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
853 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
854 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
855 | at com.esotericsoftware.kryo.Kryo.readObjectOrNull(Kryo.java:699) |
---|
856 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:611) |
---|
857 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
858 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
859 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
860 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
861 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
862 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
863 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
864 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
865 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
866 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
867 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
---|
868 | at loci.common.RandomAccessInputStream.read(RandomAccessInputStream.java:635) |
---|
869 | at com.esotericsoftware.kryo.serializers.DefaultSerializers$KryoSerializableSerializer.read(DefaultSerializers.java:363) |
---|
870 | at com.esotericsoftware.kryo.serializers.DefaultSerializers$KryoSerializableSerializer.read(DefaultSerializers.java:355) |
---|
871 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
872 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
873 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
874 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
875 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
876 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
877 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
---|
878 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:338) |
---|
879 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
---|
880 | at com.esotericsoftware.kryo.Kryo.readObjectOrNull(Kryo.java:699) |
---|
881 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:332) |
---|
882 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
---|
883 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
884 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
885 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
886 | at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) |
---|
887 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:338) |
---|
888 | at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) |
---|
889 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
890 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
891 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
892 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
893 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
894 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
895 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) |
---|
896 | at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) |
---|
897 | at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) |
---|
898 | at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:626) |
---|
899 | at loci.formats.Memoizer$KryoDeser.loadReader(Memoizer.java:137) |
---|
900 | at loci.formats.Memoizer.loadMemo(Memoizer.java:749) |
---|
901 | at loci.formats.Memoizer.setId(Memoizer.java:579) |
---|
902 | at ome.io.bioformats.BfPixelsWrapper.<init>(BfPixelsWrapper.java:51) |
---|
903 | at ome.io.bioformats.BfPixelBuffer.reader(BfPixelBuffer.java:73) |
---|
904 | at ome.io.bioformats.BfPixelBuffer.setSeries(BfPixelBuffer.java:109) |
---|
905 | at ome.io.nio.PixelsService.createBfPixelBuffer(PixelsService.java:803) |
---|
906 | at ome.io.nio.PixelsService._getPixelBuffer(PixelsService.java:574) |
---|
907 | at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:492) |
---|
908 | at ome.logic.RenderingSettingsImpl.resetDefaults(RenderingSettingsImpl.java:500) |
---|
909 | at ome.logic.RenderingSettingsImpl.resetDefaultsInSet(RenderingSettingsImpl.java:629) |
---|
910 | at ome.logic.RenderingSettingsImpl.resetDefaultsInSet(RenderingSettingsImpl.java:1383) |
---|
911 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
912 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
913 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
914 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
915 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
916 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
917 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
918 | at ome.security.basic.EventHandler.invoke(EventHandler.java:154) |
---|
919 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
920 | at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) |
---|
921 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
922 | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
---|
923 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
924 | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) |
---|
925 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
926 | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) |
---|
927 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
928 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
929 | at com.sun.proxy.$Proxy112.resetDefaultsInSet(Unknown Source) |
---|
930 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
931 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
932 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
933 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
934 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
935 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
936 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
937 | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) |
---|
938 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
939 | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
---|
940 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
941 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
942 | at com.sun.proxy.$Proxy112.resetDefaultsInSet(Unknown Source) |
---|
943 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
944 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
945 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
946 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
947 | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
---|
948 | at ome.services.throttling.Callback.run(Callback.java:56) |
---|
949 | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
---|
950 | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) |
---|
951 | at ome.services.blitz.impl.RenderingSettingsI.resetDefaultsInSet_async(RenderingSettingsI.java:140) |
---|
952 | at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) |
---|
953 | at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) |
---|
954 | at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) |
---|
955 | at java.lang.reflect.Method.invoke(Method.java:606) |
---|
956 | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
---|
957 | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
---|
958 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
---|
959 | at omero.cmd.CallContext.invoke(CallContext.java:78) |
---|
960 | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
---|
961 | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
---|
962 | at com.sun.proxy.$Proxy113.resetDefaultsInSet_async(Unknown Source) |
---|
963 | at omero.api._IRenderingSettingsTie.resetDefaultsInSet_async(_IRenderingSettingsTie.java:164) |
---|
964 | at omero.api._IRenderingSettingsDisp.___resetDefaultsInSet(_IRenderingSettingsDisp.java:423) |
---|
965 | at omero.api._IRenderingSettingsDisp.__dispatch(_IRenderingSettingsDisp.java:814) |
---|
966 | at IceInternal.Incoming.invoke(Incoming.java:159) |
---|
967 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2357) |
---|
968 | at Ice.ConnectionI.dispatch(ConnectionI.java:1208) |
---|
969 | at Ice.ConnectionI.message(ConnectionI.java:1163) |
---|
970 | at IceInternal.ThreadPool.run(ThreadPool.java:302) |
---|
971 | at IceInternal.ThreadPool.access$300(ThreadPool.java:12) |
---|
972 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643) |
---|
973 | at java.lang.Thread.run(Thread.java:744) |
---|
974 | " |
---|
975 | serverExceptionClass = "ome.conditions.InternalException" |
---|
976 | message = " Wrapped Exception: (java.lang.IllegalAccessError): |
---|
977 | tried to access class sun.nio.cs.UTF_8 from class sun.nio.cs.UTF_8ConstructorAccess" |
---|
978 | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
---|
979 | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) |
---|
980 | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) |
---|
981 | at java.lang.reflect.Constructor.newInstance(Constructor.java:526) |
---|
982 | at java.lang.Class.newInstance(Class.java:374) |
---|
983 | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2142) |
---|
984 | at IceInternal.BasicStream.throwException(BasicStream.java:1564) |
---|
985 | at IceInternal.Outgoing.throwUserException(Outgoing.java:443) |
---|
986 | at omero.api._IRenderingSettingsDelM.resetDefaultsInSet(_IRenderingSettingsDelM.java:737) |
---|
987 | at omero.api.IRenderingSettingsPrxHelper.resetDefaultsInSet(IRenderingSettingsPrxHelper.java:2091) |
---|
988 | at omero.api.IRenderingSettingsPrxHelper.resetDefaultsInSet(IRenderingSettingsPrxHelper.java:2064) |
---|
989 | at ome.formats.OMEROMetadataStoreClient.resetDefaultsAndGenerateThumbnails(OMEROMetadataStoreClient.java:2350) |
---|
990 | ... 33 more |
---|
991 | } |
---|
992 | |
---|
993 | at ome.formats.importer.ImportLibrary$ImportCallback.onFinished(ImportLibrary.java:627) ~[blitz.jar:na] |
---|
994 | at omero.cmd.CmdCallbackI.finished(CmdCallbackI.java:301) [blitz.jar:na] |
---|
995 | at omero.cmd._CmdCallbackDisp.___finished(_CmdCallbackDisp.java:130) [blitz.jar:na] |
---|
996 | at omero.cmd._CmdCallbackDisp.__dispatch(_CmdCallbackDisp.java:157) [blitz.jar:na] |
---|
997 | at IceInternal.Incoming.invoke(Incoming.java:159) [ice.jar:na] |
---|
998 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2357) [ice.jar:na] |
---|
999 | at Ice.ConnectionI.dispatch(ConnectionI.java:1208) [ice.jar:na] |
---|
1000 | at Ice.ConnectionI.message(ConnectionI.java:1163) [ice.jar:na] |
---|
1001 | at IceInternal.ThreadPool.run(ThreadPool.java:302) [ice.jar:na] |
---|
1002 | at IceInternal.ThreadPool.access$300(ThreadPool.java:12) [ice.jar:na] |
---|
1003 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643) [ice.jar:na] |
---|
1004 | at java.lang.Thread.run(Thread.java:744) [na:1.7.0_51] |
---|
1005 | 2014-09-11 10:10:05,516 11484 [ main] ERROR ome.formats.importer.ImportLibrary - Error on import |
---|
1006 | java.lang.Exception: Import failure |
---|
1007 | at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:526) ~[blitz.jar:na] |
---|
1008 | at ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:271) ~[blitz.jar:na] |
---|
1009 | at ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java:216) [blitz.jar:na] |
---|
1010 | at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:737) [blitz.jar:na] |
---|
1011 | 2014-09-11 10:10:05,516 11484 [ main] INFO ome.formats.importer.ImportLibrary - Exiting on error |
---|
1012 | |
---|
1013 | ==> Summary |
---|
1014 | 1 file uploaded, 0 filesets created, 0 images imported, 1 error in 0:00:05.784 |
---|