Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.

Ticket #1269: Blitz-0.log

File Blitz-0.log, 21.8 KB (added by jmoore, 15 years ago)

Server log from mac issues reported by Ola

Line 
12009-04-24 14:05:30,183 INFO  [                ome.services.blitz.Entry] (      main) Creating OMERO.blitz. Please wait...
22009-04-24 14:05:31,835 INFO  [ng.ShutdownSafeEhcacheManagerFactoryBean] (      main) Initializing EHCache CacheManager
32009-04-24 14:05:35,506 INFO  [  ome.services.fulltext.FullTextAnalyzer] (      main) Initialized FullTextAnalyzer
42009-04-24 14:05:42,681 INFO  [ ome.services.util.DropBoxDirectoryCheck] (      main) Synchronizing user directories. Added 0
52009-04-24 14:05:43,205 INFO  [    ome.services.fulltext.FullTextThread] (      main) Initializing Full-Text Indexer
62009-04-24 14:05:43,223 ERROR [            ome.system.PreferenceContext] (      main) Error synchronizing for mergeProperties()
72009-04-24 14:05:43,224 FATAL [          ome.services.util.DBPatchCheck] (      main)
8***************************************************************************************
9Error connecting to database table dbpatch. You may need to bootstrap.
10See https://trac.openmicroscopy.org.uk/omero/wiki/DatabaseUpgrades
11***************************************************************************************
12
13java.lang.NullPointerException
14        at ome.system.PreferenceContext.getProperty(PreferenceContext.java:96)
15        at ome.logic.ConfigImpl.getInternalValue(ConfigImpl.java:235)
16        at ome.services.util.DBPatchCheck$1.doWork(DBPatchCheck.java:62)
17        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
18        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
19        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
20        at java.lang.reflect.Method.invoke(Method.java:585)
21        at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:310)
22        at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:182)
23        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:149)
24        at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:106)
25        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
26        at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
27        at $Proxy48.doWork(Unknown Source)
28        at ome.services.util.Executor$Impl.executeStateless(Executor.java:358)
29        at ome.services.util.DBPatchCheck.start(DBPatchCheck.java:58)
30        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
31        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
32        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
33        at java.lang.reflect.Method.invoke(Method.java:585)
34        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1413)
35        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1374)
36        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1334)
37        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:473)
38        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
39        at java.security.AccessController.doPrivileged(Native Method)
40        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
41        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
42        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
43        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
44        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
45        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
46        at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:429)
47        at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:729)
48        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:381)
49        at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139)
50        at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:105)
51        at ome.system.OmeroContext.<init>(OmeroContext.java:98)
52        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
53        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
54        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
55        at java.lang.reflect.Constructor.newInstance(Constructor.java:494)
56        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:100)
57        at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:87)
58        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:248)
59        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
60        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
61        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
62        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
63        at java.security.AccessController.doPrivileged(Native Method)
64        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
65        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
66        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
67        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
68        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
69        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
70        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
71        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
72        at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:479)
73        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
74        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
75        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
76        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
77        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
78        at java.security.AccessController.doPrivileged(Native Method)
79        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
80        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
81        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
82        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
83        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
84        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:168)
85        at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:885)
86        at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:397)
87        at ome.system.OmeroContext.getInstance(OmeroContext.java:203)
88        at ome.services.blitz.Entry.start(Entry.java:169)
89        at ome.services.blitz.Entry.main(Entry.java:120)
902009-04-24 14:05:43,227 INFO  [    ome.services.fulltext.FullTextThread] (      main) Shutting down Full-Text Indexer
912009-04-24 14:05:43,227 INFO  [.services.scheduler.SchedulerFactoryBean] (      main) Shutting down Quartz Scheduler
922009-04-24 14:05:43,228 INFO  [ng.ShutdownSafeEhcacheManagerFactoryBean] (      main) Shutting down EHCache CacheManager
932009-04-24 14:05:43,229 ERROR [                ome.services.blitz.Entry] (      main) Error on startup.
94org.springframework.beans.factory.access.BootstrapException: Unable to return specified BeanFactory instance: factory key [OMERO.blitz], from group with resource name [classpath*:beanRefContext.xml]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/Users/ola/Dev/omero/dist/lib/server/blitz.jar!/beanRefContext.xml]: Cannot resolve reference to bean 'ome.server' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ome.server' defined in URL [jar:file:/Users/ola/Dev/omero/dist/lib/server/server.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'dbPatchCheck' defined in class path resource [ome/services/startup.xml]: Invocation of init method failed; nested exception is ome.conditions.InternalException:
95***************************************************************************************
96Error connecting to database table dbpatch. You may need to bootstrap.
97See https://trac.openmicroscopy.org.uk/omero/wiki/DatabaseUpgrades
98***************************************************************************************
99
100        at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:410)
101        at ome.system.OmeroContext.getInstance(OmeroContext.java:203)
102        at ome.services.blitz.Entry.start(Entry.java:169)
103        at ome.services.blitz.Entry.main(Entry.java:120)
104Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'OMERO.blitz' defined in URL [jar:file:/Users/ola/Dev/omero/dist/lib/server/blitz.jar!/beanRefContext.xml]: Cannot resolve reference to bean 'ome.server' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ome.server' defined in URL [jar:file:/Users/ola/Dev/omero/dist/lib/server/server.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'dbPatchCheck' defined in class path resource [ome/services/startup.xml]: Invocation of init method failed; nested exception is ome.conditions.InternalException:
105***************************************************************************************
106Error connecting to database table dbpatch. You may need to bootstrap.
107See https://trac.openmicroscopy.org.uk/omero/wiki/DatabaseUpgrades
108***************************************************************************************
109
110        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
111        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
112        at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:479)
113        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
114        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
115        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
116        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
117        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
118        at java.security.AccessController.doPrivileged(Native Method)
119        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
120        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
121        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
122        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
123        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
124        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:168)
125        at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:885)
126        at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:397)
127        ... 3 more
128Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ome.server' defined in URL [jar:file:/Users/ola/Dev/omero/dist/lib/server/server.jar!/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'dbPatchCheck' defined in class path resource [ome/services/startup.xml]: Invocation of init method failed; nested exception is ome.conditions.InternalException:
129***************************************************************************************
130Error connecting to database table dbpatch. You may need to bootstrap.
131See https://trac.openmicroscopy.org.uk/omero/wiki/DatabaseUpgrades
132***************************************************************************************
133
134        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:254)
135        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
136        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
137        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
138        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
139        at java.security.AccessController.doPrivileged(Native Method)
140        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
141        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
142        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
143        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
144        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
145        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
146        at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
147        ... 19 more
148Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'dbPatchCheck' defined in class path resource [ome/services/startup.xml]: Invocation of init method failed; nested exception is ome.conditions.InternalException:
149***************************************************************************************
150Error connecting to database table dbpatch. You may need to bootstrap.
151See https://trac.openmicroscopy.org.uk/omero/wiki/DatabaseUpgrades
152***************************************************************************************
153
154        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:115)
155        at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:87)
156        at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:248)
157        ... 31 more
158Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'dbPatchCheck' defined in class path resource [ome/services/startup.xml]: Invocation of init method failed; nested exception is ome.conditions.InternalException:
159***************************************************************************************
160Error connecting to database table dbpatch. You may need to bootstrap.
161See https://trac.openmicroscopy.org.uk/omero/wiki/DatabaseUpgrades
162***************************************************************************************
163
164        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1337)
165        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:473)
166        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
167        at java.security.AccessController.doPrivileged(Native Method)
168        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
169        at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
170        at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:221)
171        at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
172        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
173        at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
174        at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:429)
175        at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:729)
176        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:381)
177        at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139)
178        at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:105)
179        at ome.system.OmeroContext.<init>(OmeroContext.java:98)
180        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
181        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
182        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
183        at java.lang.reflect.Constructor.newInstance(Constructor.java:494)
184        at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:100)
185        ... 33 more
186Caused by: ome.conditions.InternalException:
187***************************************************************************************
188Error connecting to database table dbpatch. You may need to bootstrap.
189See https://trac.openmicroscopy.org.uk/omero/wiki/DatabaseUpgrades
190***************************************************************************************
191
192        at ome.services.util.DBPatchCheck.start(DBPatchCheck.java:69)
193        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
194        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
195        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
196        at java.lang.reflect.Method.invoke(Method.java:585)
197        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1413)
198        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1374)
199        at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1334)
200        ... 53 more

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