User Story #10230 (accepted)
Opened 11 years ago
Last modified 11 years ago
Create WND-CHRM demo with existing OMERO codebase — at Version 1
| Reported by: | spli | Owned by: | spli |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-4.4.7 |
| Component: | Scripting | Keywords: | n.a. |
| Cc: | analysis@… | Story Points: | n.a. |
| Sprint: | 2013-02-12 (5) | Importance: | n.a. |
| Total Remaining Time: | 0.0d | Estimated Remaining Time: | n.a. |
Description (last modified by spli)
A feasibility study: can WND-CHRM be added to OMERO with minimal server-side changes? It won't be pretty, but attempting this should highlight areas which are problematic, and means we're not purely working with hypothetical requirements.
Rough outline:
- Store features in OMERO.tables array columns
- Label training images using annotations in the database, or screen-style bulk-annotations
- One script to calculate features from images in a dataset
- One training script to create a classifier
- One prediction script to run the classifier
Updated: It roughly works, so the plan is to demo this at the PI meeting 28 February-01 March 2013 after the referenced tasks are done.
Change History (1)
comment:1 Changed 11 years ago by spli
- Description modified (diff)
- Status changed from new to accepted
- Summary changed from Attempt to use WND-CHRM with existing OMERO codebase to Create WND-CHRM demo with existing OMERO codebase
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