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Task #10602 (new)

Opened 11 years ago

Last modified 11 years ago

BUG: FS Import failure - checksum mismatch — at Version 2

Reported by: rkferguson Owned by: jburel
Priority: major Milestone: OMERO-5
Component: Insight Version: n.a.
Keywords: fs Cc: bpindelski
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: FS Demo 3

Description (last modified by rkferguson)

test_images_good > bruker

acqp import failed - off local disc and off squig

When viewing data tree - shows up as partial import 15 out of 21 look normal, 4 are very pale and washed out and one is just noise - see screenshot.

Same in Insight and Web, and ImageJ

java.io.IOException: file checksum mismatch on upload: /Users/rkferguson/omero/tmp/omero_rkferguson/13966@ls25532.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT3774015435956551614cc8dbf12-9c49-4c40-a9c4-8d2f5c78c229 (client has f9708cd6b86ffe386df3d2fbf089cd77aaab1d42, server has a5c2bf0dc86e6ee228129880780522b1008f3419)
     at ome.formats.OMEROMetadataStoreClient.writeFilesToFileStore(OMEROMetadataStoreClient.java:1859)
     at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:694)
     at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6634)
     at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:227)
     at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1443)
     at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
     at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
     at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110)
     at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
     at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
     at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
     at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
     at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
     at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
     at java.lang.Thread.run(Thread.java:680)

     at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6688)
     at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:227)
     at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1443)
     at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
     at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
     at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110)
     at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
     at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
     at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
     at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
     at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
     at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
     at java.lang.Thread.run(Thread.java:680)
Caused by: java.io.IOException: file checksum mismatch on upload: /Users/rkferguson/omero/tmp/omero_rkferguson/13966@ls25532.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT3774015435956551614cc8dbf12-9c49-4c40-a9c4-8d2f5c78c229 (client has f9708cd6b86ffe386df3d2fbf089cd77aaab1d42, server has a5c2bf0dc86e6ee228129880780522b1008f3419)
     at ome.formats.OMEROMetadataStoreClient.writeFilesToFileStore(OMEROMetadataStoreClient.java:1859)
     at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:694)
     at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6634)
     ... 12 more

Change History (3)

Changed 11 years ago by rkferguson

comment:1 Changed 11 years ago by rkferguson

comment:2 Changed 11 years ago by rkferguson

  • Description modified (diff)
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