Task #11117 (closed)
Opened 6 years ago
Closed 3 years ago
Bug: Pyslid doesn't handle blank images
| Reported by: | spli | Owned by: | icao-berg-x |
|---|---|---|---|
| Priority: | minor | Milestone: | Partner-1 |
| Component: | General | Version: | 4.4.9 |
| Keywords: | searcher | Cc: | analysis@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
Images may have one of more completely blank channels. Pyslid fails to calculate features from these. Needs investigating.
Quickest solution is probably to trap the error and return an error for that channel. This means the ContentDB will not contain an entry for that particular C/Z/T combination in an image, but the others should still work.
Change History (10)
comment:1 Changed 6 years ago by spli
comment:2 Changed 6 years ago by spli
- Status changed from new to accepted
comment:3 Changed 6 years ago by jburel
- Sprint changed from FS demo 4.4 to FS demo 4.x
Moved from sprint FS demo 4.4
comment:4 Changed 6 years ago by spli
comment:5 Changed 6 years ago by spli
Ivan: See the test case (test_calculate_fail) in https://github.com/manics/pyslid/commit/3622dccd098c6e32e04fbcc74a985a3a1180f8af
comment:6 Changed 6 years ago by spli
- Milestone changed from OMERO-5 to OMERO-4.4.10
- Sprint FS demo 4.x deleted
- Version set to 4.4.9
comment:7 Changed 6 years ago by spli
- Owner changed from spli to icao-berg-x
comment:8 Changed 6 years ago by jburel
- Milestone changed from OMERO-4.4.10 to Partner
Moving to the "partner" milestone
comment:9 Changed 6 years ago by spli
- Milestone changed from Partner to Partner-1
comment:10 Changed 3 years ago by jamoore
- Resolution set to wontfix
- Status changed from accepted to closed
Cleaning up searcher backlog.
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You may also have a look at Agilo extensions to the ticket.
Submodule update in https://github.com/openmicroscopy/omero_searcher/pull/5
Still need to submit a pyslid PR.