Task #12189 (new)
Opened 10 years ago
Last modified 10 years ago
BUG : Reading CZI files — at Initial Version
| Reported by: | bramalingam | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | minor | Milestone: | Unscheduled |
| Component: | Bio-Formats | Version: | 5.0.1 |
| Keywords: | ZeissCZIReader | Cc: | |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
Test Summary :
Data Folder : /ome/data_repo/from_Biozentrum_Basel/Charles/SPIM/large_timeseries_700GB/
System call :
candidates = ImportCandidates?(folder_depth_bioformats,reader, paths, handler;
--The CZI reader seems to have issues with grouping files / identifying number of datasets if the top-level folder is parsed via ImportCandidates?
-- When paths == /ome/data_repo/from_Biozentrum_Basel/Charles/SPIM/large_timeseries_700GB/
(Result : It does not group the files, imports every individual time point as an individual dataset).
--When paths == /ome/data_repo/from_Biozentrum_Basel/Charles/SPIM/large_timeseries_700GB/Image 17-24hpf-46hpf.czi
(Result : It groups files properly, imports the whole set as one dataset)- Expected result.
