Task #1844 (new)
Opened 14 years ago
Last modified 14 years ago
CTF correction by EMAN2 — at Version 2
Reported by: | wmoore | Owned by: | wmoore |
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Priority: | n.a. | Milestone: | Unscheduled |
Component: | n.a. | Version: | n.a. |
Keywords: | n.a. | Cc: | |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | 2.0d |
Sprint: | n.a. |
Description (last modified by wmoore)
Use EMAN2 to do CTF correction on a bunch of images in OMERO.
This is the next step in the EMAN2 single particle workflow to support via OMERO.
Need to
- get images in hand, with a list of file names
- pass filenames as arguments to ctf command line
- retrieve the result of running the ctf command ? and upload back to the server!
commands for basic ctf (lots more arguments supported)
http://blake.bcm.edu/emanwiki/EMAN2/Programs/e2ctf
In UI workflow, ctf command line calls are done through
lib/emsprworkflow.py
WorkFlowTask.spawn_task(self,program,options,string_args,bool_args,additional_args=[],temp_file_name="e2workflow_tmp.txt"):
Change History (2)
comment:1 Changed 14 years ago by wmoore
- Description modified (diff)
comment:2 Changed 14 years ago by wmoore
- Description modified (diff)